RNA–Protein interactions for RNA: ENST00000380469.7

VPS16-203, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 2 BASIC

Gene VPS16, Length 2,318 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-203ENST00000380469 NISCHQ9Y2I1 1504 aa33.7■■■□□ 2.99
VPS16-203ENST00000380469 CCDC180Q9P1Z9 1646 aa28.68■■■□□ 2.18
VPS16-203ENST00000380469 SHROOM4Q9ULL8 1493 aa28.66■■■□□ 2.18
VPS16-203ENST00000380469 ZCCHC6Q5VYS8 1495 aaKnown RBP28.5■■■□□ 2.15
VPS16-203ENST00000380469 SUPT5HO00267 1087 aaKnown RBP28.18■■■□□ 2.1
VPS16-203ENST00000380469 DCAF8L2P0C7V8 631 aa27.89■■■□□ 2.06
VPS16-203ENST00000380469 DCAF1Q9Y4B6 1507 aa27.71■■■□□ 2.03
VPS16-203ENST00000380469 CHIC1Q5VXU3 224 aa27.45■■□□□ 1.99
VPS16-203ENST00000380469 MYO15BQ96JP2 1530 aa27.27■■□□□ 1.96
VPS16-203ENST00000380469 ABCC9O60706 1549 aa26.9■■□□□ 1.9
VPS16-203ENST00000380469 SCRIBQ14160 1630 aa26.8■■□□□ 1.88
VPS16-203ENST00000380469 HRCP23327 699 aa26.72■■□□□ 1.87
VPS16-203ENST00000380469 RSF1Q96T23 1441 aaPredicted RBP26.66■■□□□ 1.86
VPS16-203ENST00000380469 PCGF6Q9BYE7 350 aa26.64■■□□□ 1.86
VPS16-203ENST00000380469 LOC105371045A0A1W2PR82 267 aa26.59■■□□□ 1.85
VPS16-203ENST00000380469 NACADO15069 1562 aa26.51■■□□□ 1.83
VPS16-203ENST00000380469 RB1CC1Q8TDY2 1594 aa26.42■■□□□ 1.82
VPS16-203ENST00000380469 TRIM41Q8WV44 630 aa26.32■■□□□ 1.8
VPS16-203ENST00000380469 CECR2Q9BXF3 1484 aa26.21■■□□□ 1.79
VPS16-203ENST00000380469 TRIM26Q12899 539 aaPredicted RBP26.21■■□□□ 1.79
VPS16-203ENST00000380469 MROH2BQ7Z745 1585 aa26.16■■□□□ 1.78
VPS16-203ENST00000380469 PPARGC1BQ86YN6 1023 aaKnown RBP26.03■■□□□ 1.76
VPS16-203ENST00000380469 WIZO95785 1651 aa26.02■■□□□ 1.76
VPS16-203ENST00000380469 FAM9AQ8IZU1 332 aaPredicted RBP26.02■■□□□ 1.76
VPS16-203ENST00000380469 BAZ1AQ9NRL2 1556 aaPredicted RBP25.91■■□□□ 1.74
VPS16-203ENST00000380469 ZEB1P37275 1124 aaPredicted RBP25.74■■□□□ 1.71
VPS16-203ENST00000380469 EHMT2Q96KQ7 1210 aa25.74■■□□□ 1.71
VPS16-203ENST00000380469 EIF4G1Q04637 1599 aaKnown RBP25.68■■□□□ 1.7
VPS16-203ENST00000380469 TOP2AP11388 1531 aaKnown RBP25.67■■□□□ 1.7
VPS16-203ENST00000380469 SMARCA4P51532 1647 aa25.65■■□□□ 1.7
VPS16-203ENST00000380469 UNC13AQ9UPW8 1703 aa25.6■■□□□ 1.69
VPS16-203ENST00000380469 CCDC88BA6NC98 1476 aa25.54■■□□□ 1.68
VPS16-203ENST00000380469 SMARCA2P51531 1590 aa25.5■■□□□ 1.67
VPS16-203ENST00000380469 ABCC8Q09428 1581 aa25.43■■□□□ 1.66
VPS16-203ENST00000380469 PABPN1Q86U42 306 aaKnown RBP eCLIP25.28■■□□□ 1.646e-7■■■■□ 25.5
VPS16-203ENST00000380469 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
VPS16-203ENST00000380469 EEA1Q15075 1411 aa25.23■■□□□ 1.63
VPS16-203ENST00000380469 SOGA1O94964 1423 aa25.22■■□□□ 1.63
VPS16-203ENST00000380469 WRNQ14191 1432 aaPredicted RBP eCLIP25.2■■□□□ 1.62
VPS16-203ENST00000380469 PEG3Q9GZU2 1588 aa25.18■■□□□ 1.62
VPS16-203ENST00000380469 TNIKQ9UKE5 1360 aa25.18■■□□□ 1.62
VPS16-203ENST00000380469 CEP162Q5TB80 1403 aa25.17■■□□□ 1.62
VPS16-203ENST00000380469 CSRNP3Q8WYN3 585 aa25.17■■□□□ 1.62
VPS16-203ENST00000380469 CCER1Q8TC90 406 aaPredicted RBP25.07■■□□□ 1.6
VPS16-203ENST00000380469 UBTFP17480 764 aaKnown RBP25.07■■□□□ 1.6
VPS16-203ENST00000380469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.06■■□□□ 1.6
VPS16-203ENST00000380469 RUSC2Q8N2Y8 1516 aa25.06■■□□□ 1.6
VPS16-203ENST00000380469 GOLGA3Q08378 1498 aa25.02■■□□□ 1.6
VPS16-203ENST00000380469 ATAD2BQ9ULI0 1458 aa24.98■■□□□ 1.59
VPS16-203ENST00000380469 TTBK1Q5TCY1 1321 aaPredicted RBP24.94■■□□□ 1.58
VPS16-203ENST00000380469 BAZ1BQ9UIG0 1483 aaKnown RBP24.93■■□□□ 1.58
VPS16-203ENST00000380469 SYNJ1O43426 1573 aa24.9■■□□□ 1.58
VPS16-203ENST00000380469 CEP164Q9UPV0 1460 aa24.88■■□□□ 1.57
VPS16-203ENST00000380469 KIF21BO75037 1637 aa24.84■■□□□ 1.57
VPS16-203ENST00000380469 CLIP1P30622 1438 aa24.71■■□□□ 1.55
VPS16-203ENST00000380469 TOP2BQ02880 1626 aa24.65■■□□□ 1.54
VPS16-203ENST00000380469 VPS8Q8N3P4 1428 aa24.62■■□□□ 1.53
VPS16-203ENST00000380469 RAPGEF2Q9Y4G8 1499 aa24.62■■□□□ 1.53
VPS16-203ENST00000380469 DIEXFQ68CQ4 756 aaKnown RBP24.6■■□□□ 1.53
VPS16-203ENST00000380469 APLP2Q06481 763 aa24.59■■□□□ 1.53
VPS16-203ENST00000380469 SCAF1Q9H7N4 1312 aaKnown RBP24.57■■□□□ 1.52
VPS16-203ENST00000380469 BIVM-ERCC5R4GMW8 1640 aa24.56■■□□□ 1.52
VPS16-203ENST00000380469 HMGXB3Q12766 1538 aa24.52■■□□□ 1.52
VPS16-203ENST00000380469 NCAPD3P42695 1498 aa24.51■■□□□ 1.51
VPS16-203ENST00000380469 HNRNPUL2Q1KMD3 747 aaKnown RBP24.49■■□□□ 1.51
VPS16-203ENST00000380469 RANGAP1P46060 587 aaPredicted RBP24.46■■□□□ 1.51
VPS16-203ENST00000380469 ERICH3Q5RHP9 1530 aa24.45■■□□□ 1.5
VPS16-203ENST00000380469 ZNF316A6NFI3 1004 aaPredicted RBP24.43■■□□□ 1.5
VPS16-203ENST00000380469 ACIN1Q9UKV3 1341 aaKnown RBP24.42■■□□□ 1.5
VPS16-203ENST00000380469 PRXQ9BXM0 1461 aa24.41■■□□□ 1.5
VPS16-203ENST00000380469 CUX1P39880 1505 aa24.36■■□□□ 1.49
VPS16-203ENST00000380469 CENPBP07199 599 aaPredicted RBP24.35■■□□□ 1.49
VPS16-203ENST00000380469 KIF27Q86VH2 1401 aa24.33■■□□□ 1.48
VPS16-203ENST00000380469 CFTRP13569 1480 aa24.32■■□□□ 1.48
VPS16-203ENST00000380469 NEUROD1Q13562 356 aa24.32■■□□□ 1.48
VPS16-203ENST00000380469 PELP1Q8IZL8 1130 aaKnown RBP24.29■■□□□ 1.48
VPS16-203ENST00000380469 ARAP1Q96P48 1450 aa24.27■■□□□ 1.48
VPS16-203ENST00000380469 PRDM2Q13029 1718 aa24.15■■□□□ 1.46
VPS16-203ENST00000380469 KANK4Q5T7N3 995 aaPredicted RBP24.13■■□□□ 1.45
VPS16-203ENST00000380469 CLSPNQ9HAW4 1339 aa24.13■■□□□ 1.45
VPS16-203ENST00000380469 GTF3C3Q9Y5Q9 886 aa24.1■■□□□ 1.45
VPS16-203ENST00000380469 ARHGAP35Q9NRY4 1499 aa24.07■■□□□ 1.44
VPS16-203ENST00000380469 RRBP1Q9P2E9 1410 aaKnown RBP24.05■■□□□ 1.44
VPS16-203ENST00000380469 CADPSQ9ULU8 1353 aa24.05■■□□□ 1.44
VPS16-203ENST00000380469 CUX2O14529 1486 aa24.04■■□□□ 1.44
VPS16-203ENST00000380469 DHX57Q6P158 1386 aaKnown RBP24.03■■□□□ 1.44
VPS16-203ENST00000380469 IGF1RP08069 1367 aa24.02■■□□□ 1.44
VPS16-203ENST00000380469 MIER1Q8N108 512 aa24.01■■□□□ 1.43
VPS16-203ENST00000380469 CCNB3Q8WWL7 1395 aa23.96■■□□□ 1.43
VPS16-203ENST00000380469 YTHDC1Q96MU7 727 aaKnown RBP23.95■■□□□ 1.43
VPS16-203ENST00000380469 CARMIL1Q5VZK9 1371 aa23.94■■□□□ 1.42
VPS16-203ENST00000380469 FGD5Q6ZNL6 1462 aa23.93■■□□□ 1.42
VPS16-203ENST00000380469 MAP3K1Q13233 1512 aa23.87■■□□□ 1.41
VPS16-203ENST00000380469 TIAM1Q13009 1591 aa23.83■■□□□ 1.41
VPS16-203ENST00000380469 ITGAEP38570 1179 aa23.82■■□□□ 1.4
VPS16-203ENST00000380469 CC2D2AQ9P2K1 1620 aa23.82■■□□□ 1.4
VPS16-203ENST00000380469 FANCD2Q9BXW9 1451 aa23.8■■□□□ 1.4
VPS16-203ENST00000380469 FHAD1B1AJZ9 1412 aa23.78■■□□□ 1.4
VPS16-203ENST00000380469 LRRC9Q6ZRR7 1453 aa23.75■■□□□ 1.39
VPS16-203ENST00000380469 DNMBPQ6XZF7 1577 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms