RNA–Protein interactions for RNA: ENST00000380469.7

VPS16-203, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 2 BASIC

Gene VPS16, Length 2,318 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-203ENST00000380469 NISCHQ9Y2I1 1504 aa33.7■■■□□ 2.99
VPS16-203ENST00000380469 CCDC180Q9P1Z9 1646 aa28.68■■■□□ 2.18
VPS16-203ENST00000380469 SHROOM4Q9ULL8 1493 aa28.66■■■□□ 2.18
VPS16-203ENST00000380469 ZCCHC6Q5VYS8 1495 aaKnown RBP28.5■■■□□ 2.15
VPS16-203ENST00000380469 SUPT5HO00267 1087 aaKnown RBP28.18■■■□□ 2.1
VPS16-203ENST00000380469 DCAF8L2P0C7V8 631 aa27.89■■■□□ 2.06
VPS16-203ENST00000380469 DCAF1Q9Y4B6 1507 aa27.71■■■□□ 2.03
VPS16-203ENST00000380469 CHIC1Q5VXU3 224 aa27.45■■□□□ 1.99
VPS16-203ENST00000380469 MYO15BQ96JP2 1530 aa27.27■■□□□ 1.96
VPS16-203ENST00000380469 ABCC9O60706 1549 aa26.9■■□□□ 1.9
VPS16-203ENST00000380469 SCRIBQ14160 1630 aa26.8■■□□□ 1.88
VPS16-203ENST00000380469 HRCP23327 699 aa26.72■■□□□ 1.87
VPS16-203ENST00000380469 RSF1Q96T23 1441 aaPredicted RBP26.66■■□□□ 1.86
VPS16-203ENST00000380469 PCGF6Q9BYE7 350 aa26.64■■□□□ 1.86
VPS16-203ENST00000380469 LOC105371045A0A1W2PR82 267 aa26.59■■□□□ 1.85
VPS16-203ENST00000380469 NACADO15069 1562 aa26.51■■□□□ 1.83
VPS16-203ENST00000380469 RB1CC1Q8TDY2 1594 aa26.42■■□□□ 1.82
VPS16-203ENST00000380469 TRIM41Q8WV44 630 aa26.32■■□□□ 1.8
VPS16-203ENST00000380469 CECR2Q9BXF3 1484 aa26.21■■□□□ 1.79
VPS16-203ENST00000380469 TRIM26Q12899 539 aaPredicted RBP26.21■■□□□ 1.79
VPS16-203ENST00000380469 MROH2BQ7Z745 1585 aa26.16■■□□□ 1.78
VPS16-203ENST00000380469 PPARGC1BQ86YN6 1023 aaKnown RBP26.03■■□□□ 1.76
VPS16-203ENST00000380469 WIZO95785 1651 aa26.02■■□□□ 1.76
VPS16-203ENST00000380469 FAM9AQ8IZU1 332 aaPredicted RBP26.02■■□□□ 1.76
VPS16-203ENST00000380469 BAZ1AQ9NRL2 1556 aaPredicted RBP25.91■■□□□ 1.74
VPS16-203ENST00000380469 ZEB1P37275 1124 aaPredicted RBP25.74■■□□□ 1.71
VPS16-203ENST00000380469 EHMT2Q96KQ7 1210 aa25.74■■□□□ 1.71
VPS16-203ENST00000380469 EIF4G1Q04637 1599 aaKnown RBP25.68■■□□□ 1.7
VPS16-203ENST00000380469 TOP2AP11388 1531 aaKnown RBP25.67■■□□□ 1.7
VPS16-203ENST00000380469 SMARCA4P51532 1647 aa25.65■■□□□ 1.7
VPS16-203ENST00000380469 UNC13AQ9UPW8 1703 aa25.6■■□□□ 1.69
VPS16-203ENST00000380469 CCDC88BA6NC98 1476 aa25.54■■□□□ 1.68
VPS16-203ENST00000380469 SMARCA2P51531 1590 aa25.5■■□□□ 1.67
VPS16-203ENST00000380469 ABCC8Q09428 1581 aa25.43■■□□□ 1.66
VPS16-203ENST00000380469 PABPN1Q86U42 306 aaKnown RBP eCLIP25.28■■□□□ 1.646e-7■■■■□ 25.5
VPS16-203ENST00000380469 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
VPS16-203ENST00000380469 EEA1Q15075 1411 aa25.23■■□□□ 1.63
VPS16-203ENST00000380469 SOGA1O94964 1423 aa25.22■■□□□ 1.63
VPS16-203ENST00000380469 WRNQ14191 1432 aaPredicted RBP eCLIP25.2■■□□□ 1.62
VPS16-203ENST00000380469 PEG3Q9GZU2 1588 aa25.18■■□□□ 1.62
VPS16-203ENST00000380469 TNIKQ9UKE5 1360 aa25.18■■□□□ 1.62
VPS16-203ENST00000380469 CEP162Q5TB80 1403 aa25.17■■□□□ 1.62
VPS16-203ENST00000380469 CSRNP3Q8WYN3 585 aa25.17■■□□□ 1.62
VPS16-203ENST00000380469 CCER1Q8TC90 406 aaPredicted RBP25.07■■□□□ 1.6
VPS16-203ENST00000380469 UBTFP17480 764 aaKnown RBP25.07■■□□□ 1.6
VPS16-203ENST00000380469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.06■■□□□ 1.6
VPS16-203ENST00000380469 RUSC2Q8N2Y8 1516 aa25.06■■□□□ 1.6
VPS16-203ENST00000380469 GOLGA3Q08378 1498 aa25.02■■□□□ 1.6
VPS16-203ENST00000380469 ATAD2BQ9ULI0 1458 aa24.98■■□□□ 1.59
VPS16-203ENST00000380469 TTBK1Q5TCY1 1321 aaPredicted RBP24.94■■□□□ 1.58
VPS16-203ENST00000380469 BAZ1BQ9UIG0 1483 aaKnown RBP24.93■■□□□ 1.58
VPS16-203ENST00000380469 SYNJ1O43426 1573 aa24.9■■□□□ 1.58
VPS16-203ENST00000380469 CEP164Q9UPV0 1460 aa24.88■■□□□ 1.57
VPS16-203ENST00000380469 KIF21BO75037 1637 aa24.84■■□□□ 1.57
VPS16-203ENST00000380469 CLIP1P30622 1438 aa24.71■■□□□ 1.55
VPS16-203ENST00000380469 TOP2BQ02880 1626 aa24.65■■□□□ 1.54
VPS16-203ENST00000380469 VPS8Q8N3P4 1428 aa24.62■■□□□ 1.53
VPS16-203ENST00000380469 RAPGEF2Q9Y4G8 1499 aa24.62■■□□□ 1.53
VPS16-203ENST00000380469 DIEXFQ68CQ4 756 aaKnown RBP24.6■■□□□ 1.53
VPS16-203ENST00000380469 APLP2Q06481 763 aa24.59■■□□□ 1.53
VPS16-203ENST00000380469 SCAF1Q9H7N4 1312 aaKnown RBP24.57■■□□□ 1.52
VPS16-203ENST00000380469 BIVM-ERCC5R4GMW8 1640 aa24.56■■□□□ 1.52
VPS16-203ENST00000380469 HMGXB3Q12766 1538 aa24.52■■□□□ 1.52
VPS16-203ENST00000380469 NCAPD3P42695 1498 aa24.51■■□□□ 1.51
VPS16-203ENST00000380469 HNRNPUL2Q1KMD3 747 aaKnown RBP24.49■■□□□ 1.51
VPS16-203ENST00000380469 RANGAP1P46060 587 aaPredicted RBP24.46■■□□□ 1.51
VPS16-203ENST00000380469 ERICH3Q5RHP9 1530 aa24.45■■□□□ 1.5
VPS16-203ENST00000380469 ZNF316A6NFI3 1004 aaPredicted RBP24.43■■□□□ 1.5
VPS16-203ENST00000380469 ACIN1Q9UKV3 1341 aaKnown RBP24.42■■□□□ 1.5
VPS16-203ENST00000380469 PRXQ9BXM0 1461 aa24.41■■□□□ 1.5
VPS16-203ENST00000380469 CUX1P39880 1505 aa24.36■■□□□ 1.49
VPS16-203ENST00000380469 CENPBP07199 599 aaPredicted RBP24.35■■□□□ 1.49
VPS16-203ENST00000380469 KIF27Q86VH2 1401 aa24.33■■□□□ 1.48
VPS16-203ENST00000380469 CFTRP13569 1480 aa24.32■■□□□ 1.48
VPS16-203ENST00000380469 NEUROD1Q13562 356 aa24.32■■□□□ 1.48
VPS16-203ENST00000380469 PELP1Q8IZL8 1130 aaKnown RBP24.29■■□□□ 1.48
VPS16-203ENST00000380469 ARAP1Q96P48 1450 aa24.27■■□□□ 1.48
VPS16-203ENST00000380469 PRDM2Q13029 1718 aa24.15■■□□□ 1.46
VPS16-203ENST00000380469 KANK4Q5T7N3 995 aaPredicted RBP24.13■■□□□ 1.45
VPS16-203ENST00000380469 CLSPNQ9HAW4 1339 aa24.13■■□□□ 1.45
VPS16-203ENST00000380469 GTF3C3Q9Y5Q9 886 aa24.1■■□□□ 1.45
VPS16-203ENST00000380469 ARHGAP35Q9NRY4 1499 aa24.07■■□□□ 1.44
VPS16-203ENST00000380469 RRBP1Q9P2E9 1410 aaKnown RBP24.05■■□□□ 1.44
VPS16-203ENST00000380469 CADPSQ9ULU8 1353 aa24.05■■□□□ 1.44
VPS16-203ENST00000380469 CUX2O14529 1486 aa24.04■■□□□ 1.44
VPS16-203ENST00000380469 DHX57Q6P158 1386 aaKnown RBP24.03■■□□□ 1.44
VPS16-203ENST00000380469 IGF1RP08069 1367 aa24.02■■□□□ 1.44
VPS16-203ENST00000380469 MIER1Q8N108 512 aa24.01■■□□□ 1.43
VPS16-203ENST00000380469 CCNB3Q8WWL7 1395 aa23.96■■□□□ 1.43
VPS16-203ENST00000380469 YTHDC1Q96MU7 727 aaKnown RBP23.95■■□□□ 1.43
VPS16-203ENST00000380469 CARMIL1Q5VZK9 1371 aa23.94■■□□□ 1.42
VPS16-203ENST00000380469 FGD5Q6ZNL6 1462 aa23.93■■□□□ 1.42
VPS16-203ENST00000380469 MAP3K1Q13233 1512 aa23.87■■□□□ 1.41
VPS16-203ENST00000380469 TIAM1Q13009 1591 aa23.83■■□□□ 1.41
VPS16-203ENST00000380469 ITGAEP38570 1179 aa23.82■■□□□ 1.4
VPS16-203ENST00000380469 CC2D2AQ9P2K1 1620 aa23.82■■□□□ 1.4
VPS16-203ENST00000380469 FANCD2Q9BXW9 1451 aa23.8■■□□□ 1.4
VPS16-203ENST00000380469 FHAD1B1AJZ9 1412 aa23.78■■□□□ 1.4
VPS16-203ENST00000380469 LRRC9Q6ZRR7 1453 aa23.75■■□□□ 1.39
VPS16-203ENST00000380469 DNMBPQ6XZF7 1577 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms