RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
SMARCA4-207ENST00000541122 NISCHQ9Y2I1 1504 aa24.16■■□□□ 1.46
SMARCA4-207ENST00000541122 SUPT5HO00267 1087 aaKnown RBP24.12■■□□□ 1.45
SMARCA4-207ENST00000541122 PELP1Q8IZL8 1130 aaKnown RBP24.05■■□□□ 1.44
SMARCA4-207ENST00000541122 MYT1Q01538 1121 aa23.49■■□□□ 1.35
SMARCA4-207ENST00000541122 SHROOM4Q9ULL8 1493 aa23.48■■□□□ 1.35
SMARCA4-207ENST00000541122 ZEB1P37275 1124 aaPredicted RBP23.31■■□□□ 1.32
SMARCA4-207ENST00000541122 CENPBP07199 599 aaPredicted RBP23.28■■□□□ 1.32
SMARCA4-207ENST00000541122 PCGF6Q9BYE7 350 aa23.26■■□□□ 1.31
SMARCA4-207ENST00000541122 APLP2Q06481 763 aa23.02■■□□□ 1.28
SMARCA4-207ENST00000541122 EHMT2Q96KQ7 1210 aa23■■□□□ 1.27
SMARCA4-207ENST00000541122 CCER1Q8TC90 406 aaPredicted RBP22.9■■□□□ 1.26
SMARCA4-207ENST00000541122 ERICH6Q7L0X2 663 aa22.88■■□□□ 1.25
SMARCA4-207ENST00000541122 FAM9AQ8IZU1 332 aaPredicted RBP22.65■■□□□ 1.22
SMARCA4-207ENST00000541122 HRCP23327 699 aa22.63■■□□□ 1.21
SMARCA4-207ENST00000541122 NEFLP07196 543 aa22.48■■□□□ 1.19
SMARCA4-207ENST00000541122 TRIM41Q8WV44 630 aa22.45■■□□□ 1.18
SMARCA4-207ENST00000541122 TRIM26Q12899 539 aaPredicted RBP22.43■■□□□ 1.18
SMARCA4-207ENST00000541122 TTBK1Q5TCY1 1321 aaPredicted RBP22.42■■□□□ 1.18
SMARCA4-207ENST00000541122 YTHDC1Q96MU7 727 aaKnown RBP22.29■■□□□ 1.16
SMARCA4-207ENST00000541122 UBTFP17480 764 aaKnown RBP22.03■■□□□ 1.12
SMARCA4-207ENST00000541122 RANGAP1P46060 587 aaPredicted RBP21.88■■□□□ 1.09
SMARCA4-207ENST00000541122 CHIC1Q5VXU3 224 aa21.86■■□□□ 1.09
SMARCA4-207ENST00000541122 PPARGC1BQ86YN6 1023 aaKnown RBP21.82■■□□□ 1.08
SMARCA4-207ENST00000541122 DIEXFQ68CQ4 756 aaKnown RBP21.72■■□□□ 1.07
SMARCA4-207ENST00000541122 DAXXQ9UER7 740 aaPredicted RBP21.71■■□□□ 1.07
SMARCA4-207ENST00000541122 ATP1B4Q9UN42 357 aaPredicted RBP21.7■■□□□ 1.06
SMARCA4-207ENST00000541122 LOC105371045A0A1W2PR82 267 aa21.66■■□□□ 1.06
SMARCA4-207ENST00000541122 RTL5Q5HYW3 569 aaPredicted RBP21.55■■□□□ 1.04
SMARCA4-207ENST00000541122 GTF3C3Q9Y5Q9 886 aa21.51■■□□□ 1.03
SMARCA4-207ENST00000541122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.44■■□□□ 1.02
SMARCA4-207ENST00000541122 HNRNPUL2Q1KMD3 747 aaKnown RBP21.43■■□□□ 1.02
SMARCA4-207ENST00000541122 ACIN1Q9UKV3 1341 aaKnown RBP21.36■■□□□ 1.01
SMARCA4-207ENST00000541122 ITGAEP38570 1179 aa21.28■■□□□ 1
SMARCA4-207ENST00000541122 ZNF316A6NFI3 1004 aaPredicted RBP21.24■□□□□ 0.99
SMARCA4-207ENST00000541122 CLSPNQ9HAW4 1339 aa21.22■□□□□ 0.99
SMARCA4-207ENST00000541122 CDK11AQ9UQ88 783 aaPredicted RBP21.17■□□□□ 0.98
SMARCA4-207ENST00000541122 POLR3GLQ9BT43 218 aa21.14■□□□□ 0.97
SMARCA4-207ENST00000541122 BCANQ96GW7 911 aa21.05■□□□□ 0.96
SMARCA4-207ENST00000541122 ANP32CO43423 234 aa21.03■□□□□ 0.96
SMARCA4-207ENST00000541122 DCAF1Q9Y4B6 1507 aa20.97■□□□□ 0.95
SMARCA4-207ENST00000541122 MYT1LQ9UL68 1186 aa20.95■□□□□ 0.95
SMARCA4-207ENST00000541122 CNGB1Q14028 1251 aaPredicted RBP20.85■□□□□ 0.93
SMARCA4-207ENST00000541122 ANP32AP39687 249 aaKnown RBP20.84■□□□□ 0.93
SMARCA4-207ENST00000541122 FAM50AQ14320 339 aaKnown RBP20.81■□□□□ 0.92
SMARCA4-207ENST00000541122 NEUROD1Q13562 356 aa20.78■□□□□ 0.92
SMARCA4-207ENST00000541122 SCAF1Q9H7N4 1312 aaKnown RBP20.73■□□□□ 0.91
SMARCA4-207ENST00000541122 TRIM52Q96A61 297 aa20.67■□□□□ 0.9
SMARCA4-207ENST00000541122 FKBP8Q14318 412 aa20.63■□□□□ 0.89
SMARCA4-207ENST00000541122 GLIPR1L2Q4G1C9 344 aa20.56■□□□□ 0.88
SMARCA4-207ENST00000541122 SLC4A1APQ9BWU0 796 aaKnown RBP20.51■□□□□ 0.87
SMARCA4-207ENST00000541122 EIF5BO60841 1220 aaKnown RBP20.49■□□□□ 0.87
SMARCA4-207ENST00000541122 CSRNP3Q8WYN3 585 aa20.49■□□□□ 0.87
SMARCA4-207ENST00000541122 ZBTB47Q9UFB7 747 aaPredicted RBP20.46■□□□□ 0.87
SMARCA4-207ENST00000541122 NPM2Q86SE8 214 aaKnown RBP20.43■□□□□ 0.86
SMARCA4-207ENST00000541122 CCDC180Q9P1Z9 1646 aa20.42■□□□□ 0.86
SMARCA4-207ENST00000541122 CANXP27824 592 aaKnown RBP20.41■□□□□ 0.86
SMARCA4-207ENST00000541122 ABCC9O60706 1549 aa20.41■□□□□ 0.86
SMARCA4-207ENST00000541122 ANP32BQ92688 251 aaKnown RBP20.38■□□□□ 0.85
SMARCA4-207ENST00000541122 ZNF326Q5BKZ1 582 aaKnown RBP20.37■□□□□ 0.85
SMARCA4-207ENST00000541122 HNRNPUQ00839 825 aaKnown RBP eCLIP20.37■□□□□ 0.85
SMARCA4-207ENST00000541122 ANP32EQ9BTT0 268 aa20.37■□□□□ 0.85
SMARCA4-207ENST00000541122 TONSLQ96HA7 1378 aa20.33■□□□□ 0.84
SMARCA4-207ENST00000541122 MIER1Q8N108 512 aa20.3■□□□□ 0.84
SMARCA4-207ENST00000541122 DDX10Q13206 875 aaKnown RBP20.27■□□□□ 0.84
SMARCA4-207ENST00000541122 UPF2Q9HAU5 1272 aaKnown RBP20.27■□□□□ 0.84
SMARCA4-207ENST00000541122 CCDC136Q96JN2 1154 aa20.25■□□□□ 0.83
SMARCA4-207ENST00000541122 NBR1Q14596 966 aa20.24■□□□□ 0.83
SMARCA4-207ENST00000541122 NEFMP07197 916 aa20.16■□□□□ 0.82
SMARCA4-207ENST00000541122 FAM9BQ8IZU0 186 aa20.15■□□□□ 0.82
SMARCA4-207ENST00000541122 ZCCHC6Q5VYS8 1495 aaKnown RBP20.13■□□□□ 0.81
SMARCA4-207ENST00000541122 HSP90AA1P07900 732 aaKnown RBP20.11■□□□□ 0.81
SMARCA4-207ENST00000541122 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.11■□□□□ 0.81
SMARCA4-207ENST00000541122 DDRGK1Q96HY6 314 aa20.1■□□□□ 0.81
SMARCA4-207ENST00000541122 MYO15BQ96JP2 1530 aa20.08■□□□□ 0.8
SMARCA4-207ENST00000541122 MRS2Q9HD23 443 aa20.04■□□□□ 0.8
SMARCA4-207ENST00000541122 TMC1Q8TDI8 760 aa20.02■□□□□ 0.8
SMARCA4-207ENST00000541122 PPM1GO15355 546 aaPredicted RBP19.96■□□□□ 0.79
SMARCA4-207ENST00000541122 P3H3Q8IVL6 736 aa19.96■□□□□ 0.79
SMARCA4-207ENST00000541122 EEA1Q15075 1411 aa19.93■□□□□ 0.78
SMARCA4-207ENST00000541122 BECN1Q14457 450 aa19.92■□□□□ 0.78
SMARCA4-207ENST00000541122 IRX6P78412 446 aaPredicted RBP19.92■□□□□ 0.78
SMARCA4-207ENST00000541122 PABPN1Q86U42 306 aaKnown RBP eCLIP19.92■□□□□ 0.78
SMARCA4-207ENST00000541122 SUPT16HQ9Y5B9 1047 aaKnown RBP19.91■□□□□ 0.78
SMARCA4-207ENST00000541122 CLIP1P30622 1438 aa19.9■□□□□ 0.78
SMARCA4-207ENST00000541122 ERICH6BQ5W0A0 696 aa19.9■□□□□ 0.78
SMARCA4-207ENST00000541122 BCL11AQ9H165 835 aa19.88■□□□□ 0.77
SMARCA4-207ENST00000541122 EIF4G2P78344 907 aaKnown RBP eCLIP19.87■□□□□ 0.77
SMARCA4-207ENST00000541122 PPP4R2Q9NY27 417 aa19.86■□□□□ 0.77
SMARCA4-207ENST00000541122 WDR43Q15061 677 aaKnown RBP eCLIP19.84■□□□□ 0.77
SMARCA4-207ENST00000541122 CEP162Q5TB80 1403 aa19.84■□□□□ 0.77
SMARCA4-207ENST00000541122 TRIM44Q96DX7 344 aaPredicted RBP19.84■□□□□ 0.77
SMARCA4-207ENST00000541122 NOP58Q9Y2X3 529 aaKnown RBP19.83■□□□□ 0.77
SMARCA4-207ENST00000541122 GOLGA3Q08378 1498 aa19.81■□□□□ 0.76
SMARCA4-207ENST00000541122 SALL2Q9Y467 1007 aaPredicted RBP19.81■□□□□ 0.76
SMARCA4-207ENST00000541122 ZNF777Q9ULD5 760 aaPredicted RBP19.78■□□□□ 0.76
SMARCA4-207ENST00000541122 ARXQ96QS3 562 aa19.78■□□□□ 0.76
SMARCA4-207ENST00000541122 SCRIBQ14160 1630 aa19.77■□□□□ 0.76
SMARCA4-207ENST00000541122 TNNT2P45379 298 aaPredicted RBP19.74■□□□□ 0.75
SMARCA4-207ENST00000541122 GOLGA6L22H0YM25 854 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms