Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 VN2R19P-201ENST00000442399 1052 ntBASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 AC087641.1-201ENST00000557561 1021 ntBASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 AP001350.2-201ENST00000625104 1094 ntBASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 KRT8P39-201ENST00000396270 1433 ntBASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC116Q8IYX3 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 FAM185BP-201ENST00000443595 716 ntBASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 FDX1P1-201ENST00000449115 551 ntBASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 CXCL1P1-201ENST00000502804 216 ntBASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC116Q8IYX3 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 AL512652.2-201ENST00000625156 1716 ntBASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 HCG4-201ENST00000418983 998 ntBASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 ACTL9-202ENST00000612068 1252 ntBASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC116Q8IYX3 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms