Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
NUP98P52948 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC30.33■■■□□ 2.45
NUP98P52948 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
NUP98P52948 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
NUP98P52948 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC30.33■■■□□ 2.45
NUP98P52948 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
NUP98P52948 AC142086.6-201ENST00000621154 1765 ntBASIC30.33■■■□□ 2.45
NUP98P52948 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NUP98P52948 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC30.32■■■□□ 2.44
NUP98P52948 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NUP98P52948 SHF-208ENST00000560734 1731 ntTSL 3 BASIC30.32■■■□□ 2.44
NUP98P52948 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC30.32■■■□□ 2.44
NUP98P52948 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.31■■■□□ 2.44
NUP98P52948 KRT16P3-201ENST00000439127 1283 ntBASIC30.31■■■□□ 2.44
NUP98P52948 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
NUP98P52948 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NUP98P52948 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
NUP98P52948 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
NUP98P52948 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.31■■■□□ 2.44
NUP98P52948 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
NUP98P52948 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
NUP98P52948 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
NUP98P52948 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.3■■■□□ 2.44
NUP98P52948 AC137630.3-201ENST00000607245 391 ntBASIC30.3■■■□□ 2.44
NUP98P52948 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.3■■■□□ 2.44
NUP98P52948 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
NUP98P52948 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
NUP98P52948 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
NUP98P52948 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC30.29■■■□□ 2.44
NUP98P52948 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
NUP98P52948 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.29■■■□□ 2.44
NUP98P52948 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC30.29■■■□□ 2.44
NUP98P52948 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.29■■■□□ 2.44
NUP98P52948 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.29■■■□□ 2.44
NUP98P52948 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC30.29■■■□□ 2.44
NUP98P52948 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC30.29■■■□□ 2.44
NUP98P52948 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
NUP98P52948 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
NUP98P52948 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
NUP98P52948 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC30.29■■■□□ 2.44
NUP98P52948 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.29■■■□□ 2.44
NUP98P52948 KRT125P-201ENST00000546827 989 ntBASIC30.29■■■□□ 2.44
NUP98P52948 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NUP98P52948 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
NUP98P52948 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NUP98P52948 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
NUP98P52948 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NUP98P52948 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
NUP98P52948 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
NUP98P52948 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NUP98P52948 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
NUP98P52948 AC120024.1-201ENST00000562672 995 ntBASIC30.24■■■□□ 2.43
NUP98P52948 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.24■■■□□ 2.43
NUP98P52948 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NUP98P52948 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NUP98P52948 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
NUP98P52948 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.24■■■□□ 2.43
NUP98P52948 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
NUP98P52948 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NUP98P52948 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.23■■■□□ 2.43
NUP98P52948 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC30.23■■■□□ 2.43
NUP98P52948 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.22■■■□□ 2.43
NUP98P52948 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NUP98P52948 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
NUP98P52948 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC30.22■■■□□ 2.43
NUP98P52948 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
NUP98P52948 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC30.22■■■□□ 2.43
NUP98P52948 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
NUP98P52948 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.22■■■□□ 2.43
NUP98P52948 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NUP98P52948 AC021242.3-201ENST00000607598 1377 ntBASIC30.21■■■□□ 2.43
NUP98P52948 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
NUP98P52948 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.21■■■□□ 2.43
NUP98P52948 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
NUP98P52948 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NUP98P52948 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.21■■■□□ 2.43
NUP98P52948 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
NUP98P52948 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.21■■■□□ 2.43
NUP98P52948 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
NUP98P52948 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.2■■■□□ 2.43
NUP98P52948 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
NUP98P52948 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
NUP98P52948 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.19■■■□□ 2.42
NUP98P52948 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
NUP98P52948 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.18■■■□□ 2.42
NUP98P52948 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NUP98P52948 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
NUP98P52948 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NUP98P52948 AC131281.2-201ENST00000520478 145 ntBASIC30.17■■■□□ 2.42
NUP98P52948 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC30.17■■■□□ 2.42
NUP98P52948 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC30.17■■■□□ 2.42
NUP98P52948 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NUP98P52948 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC30.16■■■□□ 2.42
NUP98P52948 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NUP98P52948 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
NUP98P52948 AC011551.1-201ENST00000614101 683 ntBASIC30.15■■■□□ 2.42
NUP98P52948 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.15■■■□□ 2.42
NUP98P52948 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
NUP98P52948 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC30.14■■■□□ 2.42
NUP98P52948 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms