RNA–Protein interactions for RNA: ENST00000265806.10

R3HCC1-201, Transcript of R3H domain and coiled-coil containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene R3HCC1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-201ENST00000265806 NISCHQ9Y2I1 1504 aa55.76■■■■■ 6.52
R3HCC1-201ENST00000265806 CCDC180Q9P1Z9 1646 aa48.69■■■■■ 5.38
R3HCC1-201ENST00000265806 ZCCHC6Q5VYS8 1495 aaKnown RBP46.83■■■■■ 5.09
R3HCC1-201ENST00000265806 DCAF1Q9Y4B6 1507 aa46.17■■■■■ 4.98
R3HCC1-201ENST00000265806 ABCC9O60706 1549 aa46.04■■■■■ 4.96
R3HCC1-201ENST00000265806 DCAF8L2P0C7V8 631 aa45.94■■■■■ 4.94
R3HCC1-201ENST00000265806 MYO15BQ96JP2 1530 aa45.69■■■■■ 4.9
R3HCC1-201ENST00000265806 NACADO15069 1562 aa45.38■■■■■ 4.86
R3HCC1-201ENST00000265806 SHROOM4Q9ULL8 1493 aa45.26■■■■■ 4.84
R3HCC1-201ENST00000265806 RB1CC1Q8TDY2 1594 aa44.99■■■■■ 4.79
R3HCC1-201ENST00000265806 SCRIBQ14160 1630 aa44.67■■■■■ 4.74
R3HCC1-201ENST00000265806 UNC13AQ9UPW8 1703 aa44.04■■■■■ 4.64
R3HCC1-201ENST00000265806 BICRAQ9NZM4 1560 aa43.63■■■■■ 4.57
R3HCC1-201ENST00000265806 SUPT5HO00267 1087 aaKnown RBP43.52■■■■■ 4.56
R3HCC1-201ENST00000265806 PABPN1Q86U42 306 aaKnown RBP eCLIP43.38■■■■■ 4.53
R3HCC1-201ENST00000265806 CECR2Q9BXF3 1484 aa43.29■■■■■ 4.52
R3HCC1-201ENST00000265806 RSF1Q96T23 1441 aaPredicted RBP43.2■■■■■ 4.51
R3HCC1-201ENST00000265806 BAZ1AQ9NRL2 1556 aaPredicted RBP43.07■■■■■ 4.48
R3HCC1-201ENST00000265806 MROH2BQ7Z745 1585 aa43.04■■■■■ 4.48
R3HCC1-201ENST00000265806 SMARCA4P51532 1647 aa42.87■■■■■ 4.45
R3HCC1-201ENST00000265806 WIZO95785 1651 aa42.66■■■■■ 4.42
R3HCC1-201ENST00000265806 PEG3Q9GZU2 1588 aa42.41■■■■■ 4.38
R3HCC1-201ENST00000265806 EIF4G1Q04637 1599 aaKnown RBP42.31■■■■■ 4.36
R3HCC1-201ENST00000265806 TOP2AP11388 1531 aaKnown RBP42.27■■■■■ 4.36
R3HCC1-201ENST00000265806 ATAD2BQ9ULI0 1458 aa42.2■■■■■ 4.35
R3HCC1-201ENST00000265806 SMARCA2P51531 1590 aa42.19■■■■■ 4.34
R3HCC1-201ENST00000265806 BAZ1BQ9UIG0 1483 aaKnown RBP41.94■■■■■ 4.3
R3HCC1-201ENST00000265806 NCAPD3P42695 1498 aa41.89■■■■■ 4.3
R3HCC1-201ENST00000265806 HMGXB3Q12766 1538 aa41.82■■■■■ 4.29
R3HCC1-201ENST00000265806 CCDC88BA6NC98 1476 aa41.81■■■■■ 4.28
R3HCC1-201ENST00000265806 CC2D2AQ9P2K1 1620 aa41.7■■■■■ 4.27
R3HCC1-201ENST00000265806 CHIC1Q5VXU3 224 aa41.68■■■■■ 4.26
R3HCC1-201ENST00000265806 TRIM41Q8WV44 630 aa40.98■■■■■ 4.15
R3HCC1-201ENST00000265806 CFTRP13569 1480 aa40.92■■■■■ 4.14
R3HCC1-201ENST00000265806 ABCC8Q09428 1581 aa40.85■■■■■ 4.13
R3HCC1-201ENST00000265806 CADPSQ9ULU8 1353 aa40.79■■■■■ 4.12
R3HCC1-201ENST00000265806 DNAJC5BQ9UF47 199 aa40.69■■■■■ 4.1
R3HCC1-201ENST00000265806 PRDM2Q13029 1718 aa40.68■■■■■ 4.1
R3HCC1-201ENST00000265806 WRNQ14191 1432 aaPredicted RBP eCLIP40.66■■■■■ 4.1
R3HCC1-201ENST00000265806 SYNJ1O43426 1573 aa40.47■■■■■ 4.07
R3HCC1-201ENST00000265806 LAMC3Q9Y6N6 1575 aa40.47■■■■■ 4.07
R3HCC1-201ENST00000265806 NESP48681 1621 aa40.39■■■■■ 4.06
R3HCC1-201ENST00000265806 TOP2BQ02880 1626 aa40.36■■■■■ 4.05
R3HCC1-201ENST00000265806 BIVM-ERCC5R4GMW8 1640 aa40.32■■■■■ 4.05
R3HCC1-201ENST00000265806 FANCD2Q9BXW9 1451 aa40.32■■■■■ 4.04
R3HCC1-201ENST00000265806 CUX1P39880 1505 aa40.26■■■■■ 4.03
R3HCC1-201ENST00000265806 PDS5BQ9NTI5 1447 aa40.15■■■■■ 4.02
R3HCC1-201ENST00000265806 FAM9AQ8IZU1 332 aaPredicted RBP40.15■■■■■ 4.02
R3HCC1-201ENST00000265806 SOGA1O94964 1423 aa40.09■■■■■ 4.01
R3HCC1-201ENST00000265806 EEA1Q15075 1411 aa40.08■■■■■ 4.01
R3HCC1-201ENST00000265806 CEP164Q9UPV0 1460 aa40.07■■■■■ 4.01
R3HCC1-201ENST00000265806 LOC105371045A0A1W2PR82 267 aa40.02■■■■■ 4
R3HCC1-201ENST00000265806 DNMBPQ6XZF7 1577 aa39.95■■■■□ 3.99
R3HCC1-201ENST00000265806 RUSC2Q8N2Y8 1516 aa39.92■■■■□ 3.98
R3HCC1-201ENST00000265806 KIF21AQ7Z4S6 1674 aa39.91■■■■□ 3.98
R3HCC1-201ENST00000265806 TOPBP1Q92547 1522 aa39.87■■■■□ 3.97
R3HCC1-201ENST00000265806 FGD5Q6ZNL6 1462 aa39.83■■■■□ 3.97
R3HCC1-201ENST00000265806 URB2Q14146 1524 aaKnown RBP39.81■■■■□ 3.96
R3HCC1-201ENST00000265806 CSRNP3Q8WYN3 585 aa39.81■■■■□ 3.96
R3HCC1-201ENST00000265806 POLA1P09884 1462 aaPredicted RBP39.67■■■■□ 3.94
R3HCC1-201ENST00000265806 KIF27Q86VH2 1401 aa39.65■■■■□ 3.94
R3HCC1-201ENST00000265806 MRC2Q9UBG0 1479 aa39.63■■■■□ 3.93
R3HCC1-201ENST00000265806 CUX2O14529 1486 aa39.55■■■■□ 3.92
R3HCC1-201ENST00000265806 KIF21BO75037 1637 aa39.53■■■■□ 3.92
R3HCC1-201ENST00000265806 ABCA10Q8WWZ4 1543 aa39.52■■■■□ 3.92
R3HCC1-201ENST00000265806 EHMT2Q96KQ7 1210 aa39.51■■■■□ 3.92
R3HCC1-201ENST00000265806 RAD54L2Q9Y4B4 1467 aa39.5■■■■□ 3.91
R3HCC1-201ENST00000265806 ERCC6Q03468 1493 aa39.5■■■■□ 3.91
R3HCC1-201ENST00000265806 GOLGA3Q08378 1498 aa39.47■■■■□ 3.91
R3HCC1-201ENST00000265806 WDR62O43379 1518 aa39.44■■■■□ 3.9
R3HCC1-201ENST00000265806 PRXQ9BXM0 1461 aa39.38■■■■□ 3.9
R3HCC1-201ENST00000265806 WDR97A6NE52 1622 aa39.38■■■■□ 3.89
R3HCC1-201ENST00000265806 TNIKQ9UKE5 1360 aa39.34■■■■□ 3.89
R3HCC1-201ENST00000265806 THOC2Q8NI27 1593 aaKnown RBP39.33■■■■□ 3.89
R3HCC1-201ENST00000265806 IGF1RP08069 1367 aa39.32■■■■□ 3.88
R3HCC1-201ENST00000265806 ERICH3Q5RHP9 1530 aa39.3■■■■□ 3.88
R3HCC1-201ENST00000265806 TARBP1Q13395 1621 aaKnown RBP39.29■■■■□ 3.88
R3HCC1-201ENST00000265806 RAPGEF2Q9Y4G8 1499 aa39.29■■■■□ 3.88
R3HCC1-201ENST00000265806 UBTFP17480 764 aaKnown RBP39.23■■■■□ 3.87
R3HCC1-201ENST00000265806 ABCA5Q8WWZ7 1642 aa39.19■■■■□ 3.86
R3HCC1-201ENST00000265806 IFT140Q96RY7 1462 aa39.14■■■■□ 3.86
R3HCC1-201ENST00000265806 TDRD9Q8NDG6 1382 aaKnown RBP39.12■■■■□ 3.85
R3HCC1-201ENST00000265806 CARMIL1Q5VZK9 1371 aa39.11■■■■□ 3.85
R3HCC1-201ENST00000265806 GAPVD1Q14C86 1478 aa39.11■■■■□ 3.85
R3HCC1-201ENST00000265806 CEP162Q5TB80 1403 aa39.09■■■■□ 3.85
R3HCC1-201ENST00000265806 CUL7Q14999 1698 aa39.03■■■■□ 3.84
R3HCC1-201ENST00000265806 AQRO60306 1485 aaKnown RBP eCLIP38.9■■■■□ 3.824e-7■■■■□ 19.6
R3HCC1-201ENST00000265806 ZNF608Q9ULD9 1512 aaPredicted RBP38.88■■■■□ 3.81
R3HCC1-201ENST00000265806 PBRM1Q86U86 1689 aa38.86■■■■□ 3.81
R3HCC1-201ENST00000265806 GRIN2BQ13224 1484 aa38.83■■■■□ 3.81
R3HCC1-201ENST00000265806 CLIP1P30622 1438 aa38.82■■■■□ 3.8
R3HCC1-201ENST00000265806 EIF4G3O43432 1585 aaKnown RBP38.76■■■■□ 3.8
R3HCC1-201ENST00000265806 FHAD1B1AJZ9 1412 aa38.7■■■■□ 3.79
R3HCC1-201ENST00000265806 ADAMTS12P58397 1594 aa38.67■■■■□ 3.78
R3HCC1-201ENST00000265806 SNAPC4Q5SXM2 1469 aa38.55■■■■□ 3.76
R3HCC1-201ENST00000265806 CTTNBP2Q8WZ74 1663 aa38.55■■■■□ 3.76
R3HCC1-201ENST00000265806 RANGAP1P46060 587 aaPredicted RBP38.54■■■■□ 3.76
R3HCC1-201ENST00000265806 MAGI1Q96QZ7 1491 aaPredicted RBP38.53■■■■□ 3.76
R3HCC1-201ENST00000265806 VPS8Q8N3P4 1428 aa38.48■■■■□ 3.75
R3HCC1-201ENST00000265806 ARHGAP35Q9NRY4 1499 aa38.48■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms