Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 UPF3AP3-201ENST00000420996 769 ntBASIC11.69□□□□□ -0.54
UPK3BQ9BT76 GPX1P2-201ENST00000429271 606 ntBASIC11.69□□□□□ -0.54
UPK3BQ9BT76 KRT18P2-201ENST00000447938 1258 ntBASIC11.69□□□□□ -0.54
UPK3BQ9BT76 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 MAL2-202ENST00000531508 892 ntTSL 3 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 AC023141.13-201ENST00000604991 943 ntBASIC11.69□□□□□ -0.54
UPK3BQ9BT76 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
UPK3BQ9BT76 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 AC134043.2-201ENST00000624206 2238 ntBASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 COA5-202ENST00000409997 557 ntTSL 4 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 FAM185BP-201ENST00000443595 716 ntBASIC11.68□□□□□ -0.54
UPK3BQ9BT76 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 SMN2-210ENST00000511812 867 ntTSL 2 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 PDPK2P-202ENST00000562415 1191 ntBASIC11.68□□□□□ -0.54
UPK3BQ9BT76 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 AQP6-205ENST00000618286 829 ntTSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 PC-214ENST00000628663 1470 ntTSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
UPK3BQ9BT76 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 LINC00554-201ENST00000564841 3011 ntBASIC11.67□□□□□ -0.54
UPK3BQ9BT76 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms