Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 MRPL20P1-201ENST00000400819 433 ntBASIC17.33■□□□□ 0.36
NEK3P51956 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.33■□□□□ 0.36
NEK3P51956 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.33■□□□□ 0.36
NEK3P51956 PRSS29P-201ENST00000440800 595 ntBASIC17.33■□□□□ 0.36
NEK3P51956 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.33■□□□□ 0.36
NEK3P51956 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.33■□□□□ 0.36
NEK3P51956 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.33■□□□□ 0.36
NEK3P51956 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.33■□□□□ 0.36
NEK3P51956 AC040169.1-201ENST00000565382 521 ntBASIC17.33■□□□□ 0.36
NEK3P51956 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 AC004790.2-201ENST00000623588 572 ntBASIC17.33■□□□□ 0.36
NEK3P51956 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.33■□□□□ 0.36
NEK3P51956 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
NEK3P51956 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.33■□□□□ 0.36
NEK3P51956 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.33■□□□□ 0.36
NEK3P51956 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.33■□□□□ 0.36
NEK3P51956 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.33■□□□□ 0.36
NEK3P51956 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
NEK3P51956 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
NEK3P51956 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEK3P51956 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
NEK3P51956 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.32■□□□□ 0.36
NEK3P51956 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.32■□□□□ 0.36
NEK3P51956 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
NEK3P51956 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.32■□□□□ 0.36
NEK3P51956 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.32■□□□□ 0.36
NEK3P51956 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.32■□□□□ 0.36
NEK3P51956 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
NEK3P51956 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.32■□□□□ 0.36
NEK3P51956 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
NEK3P51956 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.32■□□□□ 0.36
NEK3P51956 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.32■□□□□ 0.36
NEK3P51956 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 VN2R19P-201ENST00000442399 1052 ntBASIC17.32■□□□□ 0.36
NEK3P51956 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
NEK3P51956 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.32■□□□□ 0.36
NEK3P51956 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.32■□□□□ 0.36
NEK3P51956 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.32■□□□□ 0.36
NEK3P51956 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
NEK3P51956 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.32■□□□□ 0.36
NEK3P51956 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
NEK3P51956 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEK3P51956 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.32■□□□□ 0.36
NEK3P51956 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.32■□□□□ 0.36
NEK3P51956 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
NEK3P51956 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
NEK3P51956 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
NEK3P51956 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.31■□□□□ 0.36
NEK3P51956 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
NEK3P51956 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 PI4KAP1-204ENST00000612579 1703 ntBASIC17.31■□□□□ 0.36
NEK3P51956 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
NEK3P51956 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.31■□□□□ 0.36
NEK3P51956 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.31■□□□□ 0.36
NEK3P51956 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.31■□□□□ 0.36
NEK3P51956 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
NEK3P51956 GPALPP1-207ENST00000611650 899 ntBASIC17.31■□□□□ 0.36
NEK3P51956 AC010654.1-201ENST00000615722 808 ntBASIC17.31■□□□□ 0.36
NEK3P51956 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.31■□□□□ 0.36
NEK3P51956 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.31■□□□□ 0.36
NEK3P51956 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NEK3P51956 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms