Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.59■■■■□ 3.13
NEK3P51956 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■□□ 2.99
NEK3P51956 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.62■■■□□ 2.97
NEK3P51956 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
NEK3P51956 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.5■■■□□ 2.95
NEK3P51956 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
NEK3P51956 AL356512.1-201ENST00000607453 1739 ntBASIC33.41■■■□□ 2.94
NEK3P51956 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC33.31■■■□□ 2.92
NEK3P51956 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC33.21■■■□□ 2.91
NEK3P51956 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.01■■■□□ 2.87
NEK3P51956 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.79■■■□□ 2.84
NEK3P51956 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.56■■■□□ 2.8
NEK3P51956 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.48■■■□□ 2.79
NEK3P51956 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
NEK3P51956 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.33■■■□□ 2.77
NEK3P51956 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
NEK3P51956 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.23■■■□□ 2.75
NEK3P51956 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.15■■■□□ 2.74
NEK3P51956 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.11■■■□□ 2.73
NEK3P51956 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.09■■■□□ 2.73
NEK3P51956 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC32.01■■■□□ 2.71
NEK3P51956 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
NEK3P51956 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.97■■■□□ 2.71
NEK3P51956 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
NEK3P51956 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.95■■■□□ 2.7
NEK3P51956 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.76■■■□□ 2.68
NEK3P51956 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
NEK3P51956 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
NEK3P51956 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
NEK3P51956 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.63
NEK3P51956 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
NEK3P51956 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
NEK3P51956 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NEK3P51956 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.34■■■□□ 2.61
NEK3P51956 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
NEK3P51956 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
NEK3P51956 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NEK3P51956 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
NEK3P51956 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NEK3P51956 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
NEK3P51956 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NEK3P51956 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.13■■■□□ 2.57
NEK3P51956 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NEK3P51956 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
NEK3P51956 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
NEK3P51956 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
NEK3P51956 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.97■■■□□ 2.55
NEK3P51956 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.84■■■□□ 2.53
NEK3P51956 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.84■■■□□ 2.53
NEK3P51956 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
NEK3P51956 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
NEK3P51956 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
NEK3P51956 AC015813.7-201ENST00000623294 581 ntBASIC30.59■■■□□ 2.49
NEK3P51956 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.58■■■□□ 2.49
NEK3P51956 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
NEK3P51956 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
NEK3P51956 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
NEK3P51956 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.49■■■□□ 2.47
NEK3P51956 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.48■■■□□ 2.47
NEK3P51956 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NEK3P51956 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.47■■■□□ 2.47
NEK3P51956 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.46■■■□□ 2.47
NEK3P51956 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
NEK3P51956 AC006077.2-201ENST00000623591 457 ntBASIC30.37■■■□□ 2.45
NEK3P51956 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.36■■■□□ 2.45
NEK3P51956 ZNRF2P1-201ENST00000441407 443 ntBASIC30.28■■■□□ 2.44
NEK3P51956 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.19■■■□□ 2.42
NEK3P51956 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
NEK3P51956 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NEK3P51956 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NEK3P51956 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
NEK3P51956 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NEK3P51956 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
NEK3P51956 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
NEK3P51956 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
NEK3P51956 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NEK3P51956 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NEK3P51956 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.97■■■□□ 2.39
NEK3P51956 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
NEK3P51956 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.95■■■□□ 2.39
NEK3P51956 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
NEK3P51956 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
NEK3P51956 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC29.86■■■□□ 2.37
NEK3P51956 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
NEK3P51956 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.82■■■□□ 2.36
NEK3P51956 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
NEK3P51956 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC29.82■■■□□ 2.36
NEK3P51956 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
NEK3P51956 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
NEK3P51956 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.74■■■□□ 2.35
NEK3P51956 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
NEK3P51956 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
NEK3P51956 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
NEK3P51956 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
NEK3P51956 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.64■■■□□ 2.34
NEK3P51956 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
NEK3P51956 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.56■■■□□ 2.32
NEK3P51956 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
NEK3P51956 AP002365.1-201ENST00000603448 772 ntBASIC29.55■■■□□ 2.32
NEK3P51956 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.49■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms