Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TFF3Q07654 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
TFF3Q07654 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TFF3Q07654 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TFF3Q07654 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.79□□□□□ -0.04
TFF3Q07654 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC14.78□□□□□ -0.04
TFF3Q07654 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 WASH6P-202ENST00000359512 1437 ntBASIC14.78□□□□□ -0.04
TFF3Q07654 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
TFF3Q07654 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.78□□□□□ -0.04
TFF3Q07654 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.78□□□□□ -0.04
TFF3Q07654 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.78□□□□□ -0.04
TFF3Q07654 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
TFF3Q07654 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.78□□□□□ -0.04
TFF3Q07654 AC009053.2-201ENST00000563701 2365 ntBASIC14.78□□□□□ -0.04
TFF3Q07654 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
TFF3Q07654 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
TFF3Q07654 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TFF3Q07654 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
TFF3Q07654 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
TFF3Q07654 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
TFF3Q07654 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TFF3Q07654 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TFF3Q07654 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
TFF3Q07654 AL353732.1-201ENST00000569618 1459 ntBASIC14.77□□□□□ -0.04
TFF3Q07654 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.77□□□□□ -0.04
TFF3Q07654 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.77□□□□□ -0.04
TFF3Q07654 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TFF3Q07654 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
TFF3Q07654 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
TFF3Q07654 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC14.77□□□□□ -0.04
TFF3Q07654 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.77□□□□□ -0.05
TFF3Q07654 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
TFF3Q07654 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.77□□□□□ -0.05
TFF3Q07654 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.77□□□□□ -0.05
TFF3Q07654 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.77□□□□□ -0.05
TFF3Q07654 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.77□□□□□ -0.05
TFF3Q07654 AC097493.3-201ENST00000509725 367 ntBASIC14.77□□□□□ -0.05
TFF3Q07654 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC14.77□□□□□ -0.05
TFF3Q07654 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
TFF3Q07654 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
TFF3Q07654 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TFF3Q07654 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TFF3Q07654 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TFF3Q07654 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC14.76□□□□□ -0.05
TFF3Q07654 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TFF3Q07654 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
TFF3Q07654 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TFF3Q07654 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
TFF3Q07654 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TFF3Q07654 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TFF3Q07654 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TFF3Q07654 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.76□□□□□ -0.05
TFF3Q07654 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TFF3Q07654 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.76□□□□□ -0.05
TFF3Q07654 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
TFF3Q07654 MIR346-201ENST00000362234 95 ntBASIC14.76□□□□□ -0.05
TFF3Q07654 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
TFF3Q07654 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TFF3Q07654 HCG4-201ENST00000418983 998 ntBASIC14.76□□□□□ -0.05
TFF3Q07654 GAPDHP21-201ENST00000450301 1010 ntBASIC14.76□□□□□ -0.05
TFF3Q07654 IGHV3-42-201ENST00000520410 361 ntBASIC14.76□□□□□ -0.05
TFF3Q07654 AC069120.2-201ENST00000524091 540 ntBASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms