RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 DCAF8L2P0C7V8 631 aa30.85■■■□□ 2.53
PHRF1-205ENST00000533464 NISCHQ9Y2I1 1504 aa30.45■■■□□ 2.46
PHRF1-205ENST00000533464 SUPT5HO00267 1087 aaKnown RBP29.52■■■□□ 2.32
PHRF1-205ENST00000533464 SHROOM4Q9ULL8 1493 aa29.16■■■□□ 2.26
PHRF1-205ENST00000533464 EHMT2Q96KQ7 1210 aa28.32■■■□□ 2.12
PHRF1-205ENST00000533464 FAM9AQ8IZU1 332 aaPredicted RBP27.77■■■□□ 2.04
PHRF1-205ENST00000533464 APLP2Q06481 763 aa27.56■■■□□ 2
PHRF1-205ENST00000533464 PCGF6Q9BYE7 350 aa27.5■■□□□ 1.99
PHRF1-205ENST00000533464 TTBK1Q5TCY1 1321 aaPredicted RBP27.35■■□□□ 1.97
PHRF1-205ENST00000533464 TRIM41Q8WV44 630 aa27.34■■□□□ 1.97
PHRF1-205ENST00000533464 RANGAP1P46060 587 aaPredicted RBP27.08■■□□□ 1.93
PHRF1-205ENST00000533464 PELP1Q8IZL8 1130 aaKnown RBP26.91■■□□□ 1.9
PHRF1-205ENST00000533464 UBTFP17480 764 aaKnown RBP26.87■■□□□ 1.89
PHRF1-205ENST00000533464 CCER1Q8TC90 406 aaPredicted RBP26.82■■□□□ 1.88
PHRF1-205ENST00000533464 ZEB1P37275 1124 aaPredicted RBP26.81■■□□□ 1.88
PHRF1-205ENST00000533464 ATP1B4Q9UN42 357 aaPredicted RBP26.69■■□□□ 1.86
PHRF1-205ENST00000533464 PPARGC1BQ86YN6 1023 aaKnown RBP26.57■■□□□ 1.84
PHRF1-205ENST00000533464 CHIC1Q5VXU3 224 aa26.53■■□□□ 1.84
PHRF1-205ENST00000533464 CENPBP07199 599 aaPredicted RBP26.48■■□□□ 1.83
PHRF1-205ENST00000533464 LOC105371045A0A1W2PR82 267 aa26.44■■□□□ 1.82
PHRF1-205ENST00000533464 TRIM26Q12899 539 aaPredicted RBP26.4■■□□□ 1.82
PHRF1-205ENST00000533464 HRCP23327 699 aa26.16■■□□□ 1.78
PHRF1-205ENST00000533464 YTHDC1Q96MU7 727 aaKnown RBP26.08■■□□□ 1.77
PHRF1-205ENST00000533464 ABCC9O60706 1549 aa25.98■■□□□ 1.75
PHRF1-205ENST00000533464 ITGAEP38570 1179 aa25.97■■□□□ 1.75
PHRF1-205ENST00000533464 HNRNPUL2Q1KMD3 747 aaKnown RBP25.9■■□□□ 1.74
PHRF1-205ENST00000533464 PABPN1Q86U42 306 aaKnown RBP eCLIP25.85■■□□□ 1.73
PHRF1-205ENST00000533464 NEFLP07196 543 aa25.8■■□□□ 1.72
PHRF1-205ENST00000533464 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.76■■□□□ 1.71
PHRF1-205ENST00000533464 ERICH6Q7L0X2 663 aa25.76■■□□□ 1.71
PHRF1-205ENST00000533464 POLR3GLQ9BT43 218 aa25.46■■□□□ 1.67
PHRF1-205ENST00000533464 MYT1LQ9UL68 1186 aa25.45■■□□□ 1.66
PHRF1-205ENST00000533464 DIEXFQ68CQ4 756 aaKnown RBP25.35■■□□□ 1.65
PHRF1-205ENST00000533464 FAM50AQ14320 339 aaKnown RBP25.34■■□□□ 1.65
PHRF1-205ENST00000533464 CNGB1Q14028 1251 aaPredicted RBP25.28■■□□□ 1.64
PHRF1-205ENST00000533464 ZCCHC6Q5VYS8 1495 aaKnown RBP25.24■■□□□ 1.63
PHRF1-205ENST00000533464 CSRNP3Q8WYN3 585 aa25.17■■□□□ 1.62
PHRF1-205ENST00000533464 NEUROD1Q13562 356 aa25.1■■□□□ 1.61
PHRF1-205ENST00000533464 TRIM52Q96A61 297 aa25.09■■□□□ 1.61
PHRF1-205ENST00000533464 SCRIBQ14160 1630 aa25.04■■□□□ 1.6
PHRF1-205ENST00000533464 P3H3Q8IVL6 736 aa24.94■■□□□ 1.58
PHRF1-205ENST00000533464 MYT1Q01538 1121 aa24.92■■□□□ 1.58
PHRF1-205ENST00000533464 FBLN2P98095 1184 aa24.91■■□□□ 1.58
PHRF1-205ENST00000533464 ZNF316A6NFI3 1004 aaPredicted RBP24.84■■□□□ 1.57
PHRF1-205ENST00000533464 SLC4A1APQ9BWU0 796 aaKnown RBP24.84■■□□□ 1.57
PHRF1-205ENST00000533464 DAXXQ9UER7 740 aaPredicted RBP24.82■■□□□ 1.56
PHRF1-205ENST00000533464 CCDC180Q9P1Z9 1646 aa24.79■■□□□ 1.56
PHRF1-205ENST00000533464 ZNF326Q5BKZ1 582 aaKnown RBP24.78■■□□□ 1.56
PHRF1-205ENST00000533464 ARID3CA6NKF2 412 aa24.77■■□□□ 1.56
PHRF1-205ENST00000533464 GTF3C3Q9Y5Q9 886 aa24.73■■□□□ 1.55
PHRF1-205ENST00000533464 ANP32CO43423 234 aa24.72■■□□□ 1.55
PHRF1-205ENST00000533464 DCAF1Q9Y4B6 1507 aa24.68■■□□□ 1.54
PHRF1-205ENST00000533464 BCANQ96GW7 911 aa24.61■■□□□ 1.53
PHRF1-205ENST00000533464 ZNF777Q9ULD5 760 aaPredicted RBP24.53■■□□□ 1.52
PHRF1-205ENST00000533464 CLSPNQ9HAW4 1339 aa24.49■■□□□ 1.51
PHRF1-205ENST00000533464 RSF1Q96T23 1441 aaPredicted RBP24.48■■□□□ 1.51
PHRF1-205ENST00000533464 CDK11AQ9UQ88 783 aaPredicted RBP24.48■■□□□ 1.51
PHRF1-205ENST00000533464 ACIN1Q9UKV3 1341 aaKnown RBP24.46■■□□□ 1.51
PHRF1-205ENST00000533464 MYO15BQ96JP2 1530 aa24.4■■□□□ 1.5
PHRF1-205ENST00000533464 TONSLQ96HA7 1378 aa24.31■■□□□ 1.48
PHRF1-205ENST00000533464 RTL5Q5HYW3 569 aaPredicted RBP24.3■■□□□ 1.48
PHRF1-205ENST00000533464 RB1CC1Q8TDY2 1594 aa24.3■■□□□ 1.48
PHRF1-205ENST00000533464 CLIP1P30622 1438 aa24.27■■□□□ 1.48
PHRF1-205ENST00000533464 CHIC2Q9UKJ5 165 aa24.23■■□□□ 1.47
PHRF1-205ENST00000533464 DDX10Q13206 875 aaKnown RBP24.22■■□□□ 1.47
PHRF1-205ENST00000533464 NACADO15069 1562 aa24.16■■□□□ 1.46
PHRF1-205ENST00000533464 EEA1Q15075 1411 aa24.13■■□□□ 1.45
PHRF1-205ENST00000533464 CEP162Q5TB80 1403 aa24.13■■□□□ 1.45
PHRF1-205ENST00000533464 MTUS2Q5JR59 1369 aa24.12■■□□□ 1.45
PHRF1-205ENST00000533464 WRNQ14191 1432 aaPredicted RBP eCLIP24.11■■□□□ 1.45
PHRF1-205ENST00000533464 GOLGA3Q08378 1498 aa24.08■■□□□ 1.45
PHRF1-205ENST00000533464 CANXP27824 592 aaKnown RBP24.06■■□□□ 1.44
PHRF1-205ENST00000533464 HNRNPUQ00839 825 aaKnown RBP eCLIP24.04■■□□□ 1.44
PHRF1-205ENST00000533464 FKBP8Q14318 412 aa24.03■■□□□ 1.44
PHRF1-205ENST00000533464 BAZ1BQ9UIG0 1483 aaKnown RBP24■■□□□ 1.43
PHRF1-205ENST00000533464 CHMP7Q8WUX9 453 aaPredicted RBP24■■□□□ 1.43
PHRF1-205ENST00000533464 FAM9BQ8IZU0 186 aa24■■□□□ 1.43
PHRF1-205ENST00000533464 CHGAP10645 457 aaKnown RBP23.99■■□□□ 1.43
PHRF1-205ENST00000533464 CECR2Q9BXF3 1484 aa23.99■■□□□ 1.43
PHRF1-205ENST00000533464 TSPY4P0CV99 314 aa23.98■■□□□ 1.43
PHRF1-205ENST00000533464 TSPY10P0CW01 314 aa23.98■■□□□ 1.43
PHRF1-205ENST00000533464 NEFMP07197 916 aa23.97■■□□□ 1.43
PHRF1-205ENST00000533464 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.97■■□□□ 1.436e-8■■■□□ 15.2
PHRF1-205ENST00000533464 ZBTB47Q9UFB7 747 aaPredicted RBP23.97■■□□□ 1.43
PHRF1-205ENST00000533464 MIER1Q8N108 512 aa23.97■■□□□ 1.43
PHRF1-205ENST00000533464 TNIKQ9UKE5 1360 aa23.96■■□□□ 1.43
PHRF1-205ENST00000533464 HIRIP3Q9BW71 556 aaPredicted RBP23.94■■□□□ 1.42
PHRF1-205ENST00000533464 NPM1P06748 294 aaKnown RBP eCLIP23.92■■□□□ 1.42
PHRF1-205ENST00000533464 BCL11AQ9H165 835 aa23.92■■□□□ 1.42
PHRF1-205ENST00000533464 RRP7BPQ9NSQ0 103 aa23.92■■□□□ 1.42
PHRF1-205ENST00000533464 SLC24A1O60721 1099 aa23.89■■□□□ 1.42
PHRF1-205ENST00000533464 KIF27Q86VH2 1401 aa23.89■■□□□ 1.41
PHRF1-205ENST00000533464 BAZ1AQ9NRL2 1556 aaPredicted RBP23.88■■□□□ 1.41
PHRF1-205ENST00000533464 KDM2AQ9Y2K7 1162 aa23.88■■□□□ 1.41
PHRF1-205ENST00000533464 CEP164Q9UPV0 1460 aa23.86■■□□□ 1.41
PHRF1-205ENST00000533464 SALL2Q9Y467 1007 aaPredicted RBP23.85■■□□□ 1.41
PHRF1-205ENST00000533464 ESF1Q9H501 851 aaKnown RBP23.84■■□□□ 1.41
PHRF1-205ENST00000533464 TMC1Q8TDI8 760 aa23.83■■□□□ 1.41
PHRF1-205ENST00000533464 STAG3Q9UJ98 1225 aa23.82■■□□□ 1.4
PHRF1-205ENST00000533464 ANP32AP39687 249 aaKnown RBP23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms