RNA–Protein interactions for RNA: ENST00000520410.2

IGHV3-42-201, Transcript of immunoglobulin heavy variable 3-42 (pseudogene), humanhuman

BASIC

Gene IGHV3-42, Length 361 nt, Biotype IG V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV3-42-201ENST00000520410 NISCHQ9Y2I1 1504 aa39.75■■■■□ 3.95
IGHV3-42-201ENST00000520410 CCDC180Q9P1Z9 1646 aa35.57■■■■□ 3.29
IGHV3-42-201ENST00000520410 ABCC9O60706 1549 aa35.47■■■■□ 3.27
IGHV3-42-201ENST00000520410 RB1CC1Q8TDY2 1594 aa33.81■■■■□ 3
IGHV3-42-201ENST00000520410 DCAF8L2P0C7V8 631 aa33.73■■■□□ 2.99
IGHV3-42-201ENST00000520410 NACADO15069 1562 aa33.57■■■□□ 2.96
IGHV3-42-201ENST00000520410 PABPN1Q86U42 306 aaKnown RBP eCLIP33.07■■■□□ 2.88
IGHV3-42-201ENST00000520410 MYO15BQ96JP2 1530 aa33.07■■■□□ 2.88
IGHV3-42-201ENST00000520410 ZCCHC6Q5VYS8 1495 aaKnown RBP33■■■□□ 2.87
IGHV3-42-201ENST00000520410 UNC13AQ9UPW8 1703 aa32.97■■■□□ 2.87
IGHV3-42-201ENST00000520410 DNAJC5BQ9UF47 199 aa32.88■■■□□ 2.85
IGHV3-42-201ENST00000520410 DCAF1Q9Y4B6 1507 aa32.77■■■□□ 2.84
IGHV3-42-201ENST00000520410 BICRAQ9NZM4 1560 aa32.7■■■□□ 2.83
IGHV3-42-201ENST00000520410 SCRIBQ14160 1630 aa32.58■■■□□ 2.81
IGHV3-42-201ENST00000520410 SHROOM4Q9ULL8 1493 aa32.28■■■□□ 2.76
IGHV3-42-201ENST00000520410 CC2D2AQ9P2K1 1620 aa31.98■■■□□ 2.71
IGHV3-42-201ENST00000520410 EIF4G1Q04637 1599 aaKnown RBP31.96■■■□□ 2.71
IGHV3-42-201ENST00000520410 CECR2Q9BXF3 1484 aa31.88■■■□□ 2.69
IGHV3-42-201ENST00000520410 SMARCA4P51532 1647 aa31■■■□□ 2.55
IGHV3-42-201ENST00000520410 NCAPD3P42695 1498 aa30.94■■■□□ 2.54
IGHV3-42-201ENST00000520410 ATAD2BQ9ULI0 1458 aa30.93■■■□□ 2.54
IGHV3-42-201ENST00000520410 SMARCA2P51531 1590 aa30.9■■■□□ 2.54
IGHV3-42-201ENST00000520410 BAZ1AQ9NRL2 1556 aaPredicted RBP30.89■■■□□ 2.54
IGHV3-42-201ENST00000520410 HMGXB3Q12766 1538 aa30.78■■■□□ 2.52
IGHV3-42-201ENST00000520410 BAZ1BQ9UIG0 1483 aaKnown RBP30.75■■■□□ 2.51
IGHV3-42-201ENST00000520410 ERCC6Q03468 1493 aa30.67■■■□□ 2.5
IGHV3-42-201ENST00000520410 MROH2BQ7Z745 1585 aa30.66■■■□□ 2.5
IGHV3-42-201ENST00000520410 PEG3Q9GZU2 1588 aa30.58■■■□□ 2.49
IGHV3-42-201ENST00000520410 NESP48681 1621 aa30.49■■■□□ 2.47
IGHV3-42-201ENST00000520410 CUX2O14529 1486 aa30.38■■■□□ 2.45
IGHV3-42-201ENST00000520410 WIZO95785 1651 aa30.36■■■□□ 2.45
IGHV3-42-201ENST00000520410 LAMC3Q9Y6N6 1575 aa30.28■■■□□ 2.44
IGHV3-42-201ENST00000520410 PDS5BQ9NTI5 1447 aa30.13■■■□□ 2.41
IGHV3-42-201ENST00000520410 KIF21AQ7Z4S6 1674 aa30.11■■■□□ 2.41
IGHV3-42-201ENST00000520410 RSF1Q96T23 1441 aaPredicted RBP30.1■■■□□ 2.41
IGHV3-42-201ENST00000520410 THOC2Q8NI27 1593 aaKnown RBP30.09■■■□□ 2.41
IGHV3-42-201ENST00000520410 CADPSQ9ULU8 1353 aa30.07■■■□□ 2.4
IGHV3-42-201ENST00000520410 DNAJC5Q9H3Z4 198 aa30.03■■■□□ 2.4
IGHV3-42-201ENST00000520410 TOP2AP11388 1531 aaKnown RBP29.97■■■□□ 2.39
IGHV3-42-201ENST00000520410 MRC2Q9UBG0 1479 aa29.87■■■□□ 2.37
IGHV3-42-201ENST00000520410 CEP164Q9UPV0 1460 aa29.83■■■□□ 2.37
IGHV3-42-201ENST00000520410 FANCD2Q9BXW9 1451 aa29.79■■■□□ 2.36
IGHV3-42-201ENST00000520410 CFTRP13569 1480 aa29.75■■■□□ 2.35
IGHV3-42-201ENST00000520410 WDR62O43379 1518 aa29.73■■■□□ 2.35
IGHV3-42-201ENST00000520410 CCDC88BA6NC98 1476 aa29.61■■■□□ 2.33
IGHV3-42-201ENST00000520410 PRDM2Q13029 1718 aa29.52■■■□□ 2.32
IGHV3-42-201ENST00000520410 URB2Q14146 1524 aaKnown RBP29.49■■■□□ 2.31
IGHV3-42-201ENST00000520410 TOPBP1Q92547 1522 aa29.23■■■□□ 2.27
IGHV3-42-201ENST00000520410 SUPT5HO00267 1087 aaKnown RBP29.19■■■□□ 2.26
IGHV3-42-201ENST00000520410 IFT140Q96RY7 1462 aa29.17■■■□□ 2.26
IGHV3-42-201ENST00000520410 ABCC8Q09428 1581 aa29.16■■■□□ 2.26
IGHV3-42-201ENST00000520410 DNMBPQ6XZF7 1577 aa29.15■■■□□ 2.26
IGHV3-42-201ENST00000520410 ZNF608Q9ULD9 1512 aaPredicted RBP29.1■■■□□ 2.25
IGHV3-42-201ENST00000520410 OSCARQ8IYS5 282 aa29.07■■■□□ 2.24
IGHV3-42-201ENST00000520410 TRIM41Q8WV44 630 aa29.07■■■□□ 2.24
IGHV3-42-201ENST00000520410 EIF4G3O43432 1585 aaKnown RBP28.99■■■□□ 2.23
IGHV3-42-201ENST00000520410 POLA1P09884 1462 aaPredicted RBP28.94■■■□□ 2.22
IGHV3-42-201ENST00000520410 TARBP1Q13395 1621 aaKnown RBP28.9■■■□□ 2.22
IGHV3-42-201ENST00000520410 AQRO60306 1485 aaKnown RBP eCLIP28.9■■■□□ 2.22
IGHV3-42-201ENST00000520410 RAD54L2Q9Y4B4 1467 aa28.87■■■□□ 2.21
IGHV3-42-201ENST00000520410 SOGA1O94964 1423 aa28.85■■■□□ 2.21
IGHV3-42-201ENST00000520410 FGD5Q6ZNL6 1462 aa28.84■■■□□ 2.21
IGHV3-42-201ENST00000520410 FBLN2P98095 1184 aa28.82■■■□□ 2.2
IGHV3-42-201ENST00000520410 CUX1P39880 1505 aa28.81■■■□□ 2.2
IGHV3-42-201ENST00000520410 TDRD9Q8NDG6 1382 aaKnown RBP28.77■■■□□ 2.2
IGHV3-42-201ENST00000520410 CHD1O14646 1710 aa28.73■■■□□ 2.19
IGHV3-42-201ENST00000520410 RIMBP3CA6NJZ7 1639 aa28.67■■■□□ 2.18
IGHV3-42-201ENST00000520410 RIMBP3BA6NNM3 1639 aa28.67■■■□□ 2.18
IGHV3-42-201ENST00000520410 RIMBP3Q9UFD9 1639 aa28.67■■■□□ 2.18
IGHV3-42-201ENST00000520410 SNAPC4Q5SXM2 1469 aa28.65■■■□□ 2.18
IGHV3-42-201ENST00000520410 WDR97A6NE52 1622 aa28.62■■■□□ 2.17
IGHV3-42-201ENST00000520410 ARHGEF11O15085 1522 aa28.59■■■□□ 2.17
IGHV3-42-201ENST00000520410 GRIN2BQ13224 1484 aa28.56■■■□□ 2.16
IGHV3-42-201ENST00000520410 CHMP7Q8WUX9 453 aaPredicted RBP28.56■■■□□ 2.16
IGHV3-42-201ENST00000520410 MAGI1Q96QZ7 1491 aaPredicted RBP28.51■■■□□ 2.15
IGHV3-42-201ENST00000520410 GAPVD1Q14C86 1478 aa28.5■■■□□ 2.15
IGHV3-42-201ENST00000520410 PBRM1Q86U86 1689 aa28.5■■■□□ 2.15
IGHV3-42-201ENST00000520410 WRNQ14191 1432 aaPredicted RBP eCLIP28.47■■■□□ 2.15
IGHV3-42-201ENST00000520410 ABCA10Q8WWZ4 1543 aa28.45■■■□□ 2.15
IGHV3-42-201ENST00000520410 CYB5RLQ6IPT4 315 aa28.44■■■□□ 2.14
IGHV3-42-201ENST00000520410 SYNJ1O43426 1573 aa28.43■■■□□ 2.14
IGHV3-42-201ENST00000520410 SYNJ2O15056 1496 aa28.42■■■□□ 2.14
IGHV3-42-201ENST00000520410 TOP2BQ02880 1626 aa28.4■■■□□ 2.14
IGHV3-42-201ENST00000520410 ABCA5Q8WWZ7 1642 aa28.4■■■□□ 2.14
IGHV3-42-201ENST00000520410 BIVM-ERCC5R4GMW8 1640 aa28.4■■■□□ 2.14
IGHV3-42-201ENST00000520410 CLASP1Q7Z460 1538 aa28.33■■■□□ 2.13
IGHV3-42-201ENST00000520410 ARAP1Q96P48 1450 aa28.32■■■□□ 2.12
IGHV3-42-201ENST00000520410 ADAMTS12P58397 1594 aa28.22■■■□□ 2.11
IGHV3-42-201ENST00000520410 GRIN2AQ12879 1464 aa28.19■■■□□ 2.1
IGHV3-42-201ENST00000520410 TRHP20396 242 aaPredicted RBP28.16■■■□□ 2.1
IGHV3-42-201ENST00000520410 FHAD1B1AJZ9 1412 aa28.13■■■□□ 2.09
IGHV3-42-201ENST00000520410 ERICH3Q5RHP9 1530 aa28.12■■■□□ 2.09
IGHV3-42-201ENST00000520410 CEP170Q5SW79 1584 aa28.07■■■□□ 2.08
IGHV3-42-201ENST00000520410 NUP160Q12769 1436 aa28.01■■■□□ 2.08
IGHV3-42-201ENST00000520410 ERCC6L2Q5T890 1561 aa27.95■■■□□ 2.07
IGHV3-42-201ENST00000520410 KIF27Q86VH2 1401 aa27.92■■■□□ 2.06
IGHV3-42-201ENST00000520410 SHROOM2Q13796 1616 aa27.85■■■□□ 2.05
IGHV3-42-201ENST00000520410 PRG4Q92954 1404 aaPredicted RBP27.83■■■□□ 2.05
IGHV3-42-201ENST00000520410 RUSC2Q8N2Y8 1516 aa27.81■■■□□ 2.04
IGHV3-42-201ENST00000520410 CUL7Q14999 1698 aa27.81■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 130.1 ms