RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DCAF8L2P0C7V8 631 aa29.07■■■□□ 2.24
SYNPO-201ENST00000307662 NISCHQ9Y2I1 1504 aa28.7■■■□□ 2.18
SYNPO-201ENST00000307662 SUPT5HO00267 1087 aaKnown RBP28.17■■■□□ 2.1
SYNPO-201ENST00000307662 PELP1Q8IZL8 1130 aaKnown RBP27.81■■■□□ 2.04
SYNPO-201ENST00000307662 SHROOM4Q9ULL8 1493 aa27.48■■□□□ 1.99
SYNPO-201ENST00000307662 EHMT2Q96KQ7 1210 aa27.22■■□□□ 1.95
SYNPO-201ENST00000307662 PCGF6Q9BYE7 350 aa27.03■■□□□ 1.92
SYNPO-201ENST00000307662 CENPBP07199 599 aaPredicted RBP26.88■■□□□ 1.89
SYNPO-201ENST00000307662 APLP2Q06481 763 aa26.83■■□□□ 1.89
SYNPO-201ENST00000307662 ZEB1P37275 1124 aaPredicted RBP26.76■■□□□ 1.88
SYNPO-201ENST00000307662 MYT1Q01538 1121 aa26.75■■□□□ 1.87
SYNPO-201ENST00000307662 ERICH6Q7L0X2 663 aa26.65■■□□□ 1.86
SYNPO-201ENST00000307662 FAM9AQ8IZU1 332 aaPredicted RBP26.56■■□□□ 1.84
SYNPO-201ENST00000307662 CCER1Q8TC90 406 aaPredicted RBP26.51■■□□□ 1.83
SYNPO-201ENST00000307662 TTBK1Q5TCY1 1321 aaPredicted RBP26.45■■□□□ 1.83
SYNPO-201ENST00000307662 YTHDC1Q96MU7 727 aaKnown RBP26.08■■□□□ 1.77
SYNPO-201ENST00000307662 NEFLP07196 543 aa26.08■■□□□ 1.77
SYNPO-201ENST00000307662 TRIM41Q8WV44 630 aa26.07■■□□□ 1.76
SYNPO-201ENST00000307662 HRCP23327 699 aa25.97■■□□□ 1.75
SYNPO-201ENST00000307662 RANGAP1P46060 587 aaPredicted RBP25.84■■□□□ 1.73
SYNPO-201ENST00000307662 TRIM26Q12899 539 aaPredicted RBP25.83■■□□□ 1.73
SYNPO-201ENST00000307662 UBTFP17480 764 aaKnown RBP25.7■■□□□ 1.7
SYNPO-201ENST00000307662 ATP1B4Q9UN42 357 aaPredicted RBP25.56■■□□□ 1.68
SYNPO-201ENST00000307662 PPARGC1BQ86YN6 1023 aaKnown RBP25.54■■□□□ 1.68
SYNPO-201ENST00000307662 DAXXQ9UER7 740 aaPredicted RBP25.29■■□□□ 1.64
SYNPO-201ENST00000307662 LOC105371045A0A1W2PR82 267 aa25.19■■□□□ 1.62
SYNPO-201ENST00000307662 CHIC1Q5VXU3 224 aa25.17■■□□□ 1.62
SYNPO-201ENST00000307662 DIEXFQ68CQ4 756 aaKnown RBP25.12■■□□□ 1.61
SYNPO-201ENST00000307662 HNRNPUL2Q1KMD3 747 aaKnown RBP25■■□□□ 1.59
SYNPO-201ENST00000307662 RTL5Q5HYW3 569 aaPredicted RBP24.99■■□□□ 1.59
SYNPO-201ENST00000307662 ITGAEP38570 1179 aa24.98■■□□□ 1.59
SYNPO-201ENST00000307662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.94■■□□□ 1.58
SYNPO-201ENST00000307662 POLR3GLQ9BT43 218 aa24.89■■□□□ 1.57
SYNPO-201ENST00000307662 GTF3C3Q9Y5Q9 886 aa24.89■■□□□ 1.57
SYNPO-201ENST00000307662 ZNF316A6NFI3 1004 aaPredicted RBP24.74■■□□□ 1.55
SYNPO-201ENST00000307662 CNGB1Q14028 1251 aaPredicted RBP24.67■■□□□ 1.54
SYNPO-201ENST00000307662 BCANQ96GW7 911 aa24.61■■□□□ 1.53
SYNPO-201ENST00000307662 ACIN1Q9UKV3 1341 aaKnown RBP24.56■■□□□ 1.52
SYNPO-201ENST00000307662 CLSPNQ9HAW4 1339 aa24.55■■□□□ 1.52
SYNPO-201ENST00000307662 CDK11AQ9UQ88 783 aaPredicted RBP24.51■■□□□ 1.51
SYNPO-201ENST00000307662 ANP32CO43423 234 aa24.37■■□□□ 1.49
SYNPO-201ENST00000307662 ABCC9O60706 1549 aa24.33■■□□□ 1.48
SYNPO-201ENST00000307662 MYT1LQ9UL68 1186 aa24.32■■□□□ 1.48
SYNPO-201ENST00000307662 FAM50AQ14320 339 aaKnown RBP24.3■■□□□ 1.48
SYNPO-201ENST00000307662 NEUROD1Q13562 356 aa24.3■■□□□ 1.48
SYNPO-201ENST00000307662 PABPN1Q86U42 306 aaKnown RBP eCLIP24.2■■□□□ 1.46
SYNPO-201ENST00000307662 SLC4A1APQ9BWU0 796 aaKnown RBP24.2■■□□□ 1.46
SYNPO-201ENST00000307662 TRIM52Q96A61 297 aa24.16■■□□□ 1.46
SYNPO-201ENST00000307662 ANP32AP39687 249 aaKnown RBP24.12■■□□□ 1.45
SYNPO-201ENST00000307662 FKBP8Q14318 412 aa23.94■■□□□ 1.42
SYNPO-201ENST00000307662 ZNF326Q5BKZ1 582 aaKnown RBP23.91■■□□□ 1.42
SYNPO-201ENST00000307662 EIF5BO60841 1220 aaKnown RBP23.89■■□□□ 1.41
SYNPO-201ENST00000307662 ZBTB47Q9UFB7 747 aaPredicted RBP23.89■■□□□ 1.41
SYNPO-201ENST00000307662 NPM2Q86SE8 214 aaKnown RBP23.87■■□□□ 1.41
SYNPO-201ENST00000307662 SCAF1Q9H7N4 1312 aaKnown RBP23.85■■□□□ 1.41
SYNPO-201ENST00000307662 CANXP27824 592 aaKnown RBP23.85■■□□□ 1.41
SYNPO-201ENST00000307662 CSRNP3Q8WYN3 585 aa23.84■■□□□ 1.41
SYNPO-201ENST00000307662 DCAF1Q9Y4B6 1507 aa23.84■■□□□ 1.41
SYNPO-201ENST00000307662 ZCCHC6Q5VYS8 1495 aaKnown RBP23.81■■□□□ 1.4
SYNPO-201ENST00000307662 GLIPR1L2Q4G1C9 344 aa23.69■■□□□ 1.38
SYNPO-201ENST00000307662 HNRNPUQ00839 825 aaKnown RBP eCLIP23.65■■□□□ 1.38
SYNPO-201ENST00000307662 ANP32BQ92688 251 aaKnown RBP23.64■■□□□ 1.37
SYNPO-201ENST00000307662 NBR1Q14596 966 aa23.59■■□□□ 1.37
SYNPO-201ENST00000307662 SCRIBQ14160 1630 aa23.58■■□□□ 1.37
SYNPO-201ENST00000307662 BCL11AQ9H165 835 aa23.57■■□□□ 1.36
SYNPO-201ENST00000307662 DDX10Q13206 875 aaKnown RBP23.56■■□□□ 1.36
SYNPO-201ENST00000307662 TONSLQ96HA7 1378 aa23.52■■□□□ 1.36
SYNPO-201ENST00000307662 P3H3Q8IVL6 736 aa23.51■■□□□ 1.35
SYNPO-201ENST00000307662 NEFMP07197 916 aa23.51■■□□□ 1.35
SYNPO-201ENST00000307662 UPF2Q9HAU5 1272 aaKnown RBP23.5■■□□□ 1.35
SYNPO-201ENST00000307662 FAM9BQ8IZU0 186 aa23.49■■□□□ 1.35
SYNPO-201ENST00000307662 CCDC136Q96JN2 1154 aa23.49■■□□□ 1.35
SYNPO-201ENST00000307662 MIER1Q8N108 512 aa23.48■■□□□ 1.35
SYNPO-201ENST00000307662 FBLN2P98095 1184 aa23.46■■□□□ 1.35
SYNPO-201ENST00000307662 HSP90AA1P07900 732 aaKnown RBP23.46■■□□□ 1.35
SYNPO-201ENST00000307662 CCDC180Q9P1Z9 1646 aa23.44■■□□□ 1.34
SYNPO-201ENST00000307662 ANP32EQ9BTT0 268 aa23.38■■□□□ 1.33
SYNPO-201ENST00000307662 SLC24A1O60721 1099 aa23.32■■□□□ 1.32
SYNPO-201ENST00000307662 ARID3CA6NKF2 412 aa23.3■■□□□ 1.32
SYNPO-201ENST00000307662 IRX6P78412 446 aaPredicted RBP23.27■■□□□ 1.32
SYNPO-201ENST00000307662 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.27■■□□□ 1.31
SYNPO-201ENST00000307662 TMC1Q8TDI8 760 aa23.26■■□□□ 1.31
SYNPO-201ENST00000307662 SALL2Q9Y467 1007 aaPredicted RBP23.25■■□□□ 1.31
SYNPO-201ENST00000307662 MRS2Q9HD23 443 aa23.25■■□□□ 1.31
SYNPO-201ENST00000307662 ARXQ96QS3 562 aa23.23■■□□□ 1.31
SYNPO-201ENST00000307662 ZNF777Q9ULD5 760 aaPredicted RBP23.21■■□□□ 1.31
SYNPO-201ENST00000307662 DDRGK1Q96HY6 314 aa23.16■■□□□ 1.3
SYNPO-201ENST00000307662 WDR43Q15061 677 aaKnown RBP eCLIP23.07■■□□□ 1.28
SYNPO-201ENST00000307662 RSF1Q96T23 1441 aaPredicted RBP23.06■■□□□ 1.28
SYNPO-201ENST00000307662 BECN1Q14457 450 aa23.04■■□□□ 1.28
SYNPO-201ENST00000307662 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
SYNPO-201ENST00000307662 HIRIP3Q9BW71 556 aaPredicted RBP23.03■■□□□ 1.28
SYNPO-201ENST00000307662 CLIP1P30622 1438 aa23.02■■□□□ 1.28
SYNPO-201ENST00000307662 TRIM44Q96DX7 344 aaPredicted RBP23■■□□□ 1.27
SYNPO-201ENST00000307662 EEA1Q15075 1411 aa22.99■■□□□ 1.27
SYNPO-201ENST00000307662 EIF4G2P78344 907 aaKnown RBP eCLIP22.98■■□□□ 1.27
SYNPO-201ENST00000307662 PPM1GO15355 546 aaPredicted RBP22.97■■□□□ 1.27
SYNPO-201ENST00000307662 CHIC2Q9UKJ5 165 aa22.97■■□□□ 1.27
SYNPO-201ENST00000307662 RB1CC1Q8TDY2 1594 aa22.94■■□□□ 1.26
SYNPO-201ENST00000307662 SUPT16HQ9Y5B9 1047 aaKnown RBP22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms