RNA–Protein interactions for RNA: ENST00000539208.5

GNE-204, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 2 BASIC

Gene GNE, Length 2,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-204ENST00000539208 NISCHQ9Y2I1 1504 aa38.54■■■■□ 3.76
GNE-204ENST00000539208 CCDC180Q9P1Z9 1646 aa33.15■■■□□ 2.9
GNE-204ENST00000539208 ZCCHC6Q5VYS8 1495 aaKnown RBP32.54■■■□□ 2.8
GNE-204ENST00000539208 SHROOM4Q9ULL8 1493 aa32.07■■■□□ 2.72
GNE-204ENST00000539208 DCAF1Q9Y4B6 1507 aa31.85■■■□□ 2.69
GNE-204ENST00000539208 DCAF8L2P0C7V8 631 aa31.58■■■□□ 2.65
GNE-204ENST00000539208 SUPT5HO00267 1087 aaKnown RBP31.29■■■□□ 2.6
GNE-204ENST00000539208 MYO15BQ96JP2 1530 aa31.15■■■□□ 2.58
GNE-204ENST00000539208 NACADO15069 1562 aa30.7■■■□□ 2.5
GNE-204ENST00000539208 SCRIBQ14160 1630 aa30.65■■■□□ 2.5
GNE-204ENST00000539208 ABCC9O60706 1549 aa30.64■■■□□ 2.5
GNE-204ENST00000539208 CHIC1Q5VXU3 224 aa30.42■■■□□ 2.46
GNE-204ENST00000539208 RSF1Q96T23 1441 aaPredicted RBP30.25■■■□□ 2.43
GNE-204ENST00000539208 RB1CC1Q8TDY2 1594 aa30.22■■■□□ 2.43
GNE-204ENST00000539208 CECR2Q9BXF3 1484 aa29.91■■■□□ 2.38
GNE-204ENST00000539208 MROH2BQ7Z745 1585 aa29.83■■■□□ 2.37
GNE-204ENST00000539208 UNC13AQ9UPW8 1703 aa29.67■■■□□ 2.34
GNE-204ENST00000539208 BAZ1AQ9NRL2 1556 aaPredicted RBP29.67■■■□□ 2.34
GNE-204ENST00000539208 WIZO95785 1651 aa29.62■■■□□ 2.33
GNE-204ENST00000539208 SMARCA4P51532 1647 aa29.43■■■□□ 2.3
GNE-204ENST00000539208 TRIM41Q8WV44 630 aa29.35■■■□□ 2.29
GNE-204ENST00000539208 BICRAQ9NZM4 1560 aa29.35■■■□□ 2.29
GNE-204ENST00000539208 LOC105371045A0A1W2PR82 267 aa29.31■■■□□ 2.28
GNE-204ENST00000539208 TOP2AP11388 1531 aaKnown RBP29.31■■■□□ 2.28
GNE-204ENST00000539208 EIF4G1Q04637 1599 aaKnown RBP29.19■■■□□ 2.26
GNE-204ENST00000539208 PABPN1Q86U42 306 aaKnown RBP eCLIP29.11■■■□□ 2.25
GNE-204ENST00000539208 SMARCA2P51531 1590 aa29.08■■■□□ 2.25
GNE-204ENST00000539208 CCDC88BA6NC98 1476 aa29.06■■■□□ 2.24
GNE-204ENST00000539208 PEG3Q9GZU2 1588 aa29.04■■■□□ 2.24
GNE-204ENST00000539208 PCGF6Q9BYE7 350 aa28.86■■■□□ 2.21
GNE-204ENST00000539208 FAM9AQ8IZU1 332 aaPredicted RBP28.85■■■□□ 2.21
GNE-204ENST00000539208 ATAD2BQ9ULI0 1458 aa28.75■■■□□ 2.19
GNE-204ENST00000539208 HRCP23327 699 aa28.74■■■□□ 2.19
GNE-204ENST00000539208 ABCC8Q09428 1581 aa28.72■■■□□ 2.19
GNE-204ENST00000539208 TRIM26Q12899 539 aaPredicted RBP28.64■■■□□ 2.18
GNE-204ENST00000539208 BAZ1BQ9UIG0 1483 aaKnown RBP28.62■■■□□ 2.17
GNE-204ENST00000539208 EEA1Q15075 1411 aa28.46■■■□□ 2.15
GNE-204ENST00000539208 WRNQ14191 1432 aaPredicted RBP eCLIP28.42■■■□□ 2.14
GNE-204ENST00000539208 EHMT2Q96KQ7 1210 aa28.41■■■□□ 2.14
GNE-204ENST00000539208 SOGA1O94964 1423 aa28.38■■■□□ 2.13
GNE-204ENST00000539208 HMGXB3Q12766 1538 aa28.36■■■□□ 2.13
GNE-204ENST00000539208 NCAPD3P42695 1498 aa28.36■■■□□ 2.13
GNE-204ENST00000539208 SYNJ1O43426 1573 aa28.28■■■□□ 2.12
GNE-204ENST00000539208 CSRNP3Q8WYN3 585 aa28.26■■■□□ 2.11
GNE-204ENST00000539208 RUSC2Q8N2Y8 1516 aa28.23■■■□□ 2.11
GNE-204ENST00000539208 TNIKQ9UKE5 1360 aa28.22■■■□□ 2.11
GNE-204ENST00000539208 CEP162Q5TB80 1403 aa28.11■■■□□ 2.09
GNE-204ENST00000539208 GOLGA3Q08378 1498 aa28.11■■■□□ 2.09
GNE-204ENST00000539208 TOP2BQ02880 1626 aa28.09■■■□□ 2.09
GNE-204ENST00000539208 KIF21BO75037 1637 aa28.04■■■□□ 2.08
GNE-204ENST00000539208 BIVM-ERCC5R4GMW8 1640 aa28.03■■■□□ 2.08
GNE-204ENST00000539208 CEP164Q9UPV0 1460 aa28.02■■■□□ 2.08
GNE-204ENST00000539208 CFTRP13569 1480 aa27.97■■■□□ 2.07
GNE-204ENST00000539208 UBTFP17480 764 aaKnown RBP27.97■■■□□ 2.07
GNE-204ENST00000539208 ZEB1P37275 1124 aaPredicted RBP27.94■■■□□ 2.06
GNE-204ENST00000539208 PPARGC1BQ86YN6 1023 aaKnown RBP27.93■■■□□ 2.06
GNE-204ENST00000539208 PRDM2Q13029 1718 aa27.83■■■□□ 2.04
GNE-204ENST00000539208 CUX1P39880 1505 aa27.82■■■□□ 2.04
GNE-204ENST00000539208 RAPGEF2Q9Y4G8 1499 aa27.75■■■□□ 2.03
GNE-204ENST00000539208 CC2D2AQ9P2K1 1620 aa27.74■■■□□ 2.03
GNE-204ENST00000539208 CLIP1P30622 1438 aa27.7■■■□□ 2.03
GNE-204ENST00000539208 ERICH3Q5RHP9 1530 aa27.7■■■□□ 2.03
GNE-204ENST00000539208 CADPSQ9ULU8 1353 aa27.7■■■□□ 2.02
GNE-204ENST00000539208 PRXQ9BXM0 1461 aa27.68■■■□□ 2.02
GNE-204ENST00000539208 KIF27Q86VH2 1401 aa27.63■■■□□ 2.01
GNE-204ENST00000539208 VPS8Q8N3P4 1428 aa27.58■■■□□ 2.01
GNE-204ENST00000539208 TTBK1Q5TCY1 1321 aaPredicted RBP27.42■■□□□ 1.98
GNE-204ENST00000539208 FANCD2Q9BXW9 1451 aa27.38■■□□□ 1.97
GNE-204ENST00000539208 FGD5Q6ZNL6 1462 aa27.37■■□□□ 1.97
GNE-204ENST00000539208 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.37■■□□□ 1.97
GNE-204ENST00000539208 CUX2O14529 1486 aa27.36■■□□□ 1.97
GNE-204ENST00000539208 CCER1Q8TC90 406 aaPredicted RBP27.35■■□□□ 1.97
GNE-204ENST00000539208 IGF1RP08069 1367 aa27.33■■□□□ 1.97
GNE-204ENST00000539208 ARAP1Q96P48 1450 aa27.33■■□□□ 1.97
GNE-204ENST00000539208 APLP2Q06481 763 aa27.32■■□□□ 1.96
GNE-204ENST00000539208 DNMBPQ6XZF7 1577 aa27.28■■□□□ 1.96
GNE-204ENST00000539208 RANGAP1P46060 587 aaPredicted RBP27.25■■□□□ 1.95
GNE-204ENST00000539208 LAMC3Q9Y6N6 1575 aa27.22■■□□□ 1.95
GNE-204ENST00000539208 CARMIL1Q5VZK9 1371 aa27.19■■□□□ 1.94
GNE-204ENST00000539208 NESP48681 1621 aa27.19■■□□□ 1.94
GNE-204ENST00000539208 TOPBP1Q92547 1522 aa27.19■■□□□ 1.94
GNE-204ENST00000539208 ARHGAP35Q9NRY4 1499 aa27.17■■□□□ 1.94
GNE-204ENST00000539208 ABCA10Q8WWZ4 1543 aa27.16■■□□□ 1.94
GNE-204ENST00000539208 POLA1P09884 1462 aaPredicted RBP27.12■■□□□ 1.93
GNE-204ENST00000539208 RAD54L2Q9Y4B4 1467 aa27.06■■□□□ 1.92
GNE-204ENST00000539208 URB2Q14146 1524 aaKnown RBP27■■□□□ 1.91
GNE-204ENST00000539208 PDS5BQ9NTI5 1447 aa27■■□□□ 1.91
GNE-204ENST00000539208 HNRNPUL2Q1KMD3 747 aaKnown RBP27■■□□□ 1.91
GNE-204ENST00000539208 CUL7Q14999 1698 aa26.98■■□□□ 1.91
GNE-204ENST00000539208 KANK4Q5T7N3 995 aaPredicted RBP26.98■■□□□ 1.91
GNE-204ENST00000539208 WDR97A6NE52 1622 aa26.97■■□□□ 1.91
GNE-204ENST00000539208 MAP3K1Q13233 1512 aa26.96■■□□□ 1.91
GNE-204ENST00000539208 RRBP1Q9P2E9 1410 aaKnown RBP26.91■■□□□ 1.9
GNE-204ENST00000539208 ABCA5Q8WWZ7 1642 aa26.85■■□□□ 1.89
GNE-204ENST00000539208 FHAD1B1AJZ9 1412 aa26.85■■□□□ 1.89
GNE-204ENST00000539208 DNAJC5BQ9UF47 199 aa26.85■■□□□ 1.89
GNE-204ENST00000539208 TIAM1Q13009 1591 aa26.85■■□□□ 1.89
GNE-204ENST00000539208 KIF21AQ7Z4S6 1674 aa26.83■■□□□ 1.89
GNE-204ENST00000539208 EFCAB5A4FU69 1503 aa26.83■■□□□ 1.89
GNE-204ENST00000539208 CTTNBP2Q8WZ74 1663 aa26.8■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms