Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM1P09493 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.66■□□□□ 0.58
TPM1P09493 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC18.66■□□□□ 0.58
TPM1P09493 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TPM1P09493 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
TPM1P09493 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
TPM1P09493 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.65■□□□□ 0.58
TPM1P09493 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.65■□□□□ 0.58
TPM1P09493 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 TERF1P1-201ENST00000311003 1181 ntBASIC18.65■□□□□ 0.58
TPM1P09493 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
TPM1P09493 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
TPM1P09493 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.65■□□□□ 0.58
TPM1P09493 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.65■□□□□ 0.58
TPM1P09493 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.65■□□□□ 0.58
TPM1P09493 AL592071.1-201ENST00000611956 408 ntBASIC18.65■□□□□ 0.58
TPM1P09493 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.65■□□□□ 0.58
TPM1P09493 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.65■□□□□ 0.58
TPM1P09493 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.65■□□□□ 0.58
TPM1P09493 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.65■□□□□ 0.58
TPM1P09493 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
TPM1P09493 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM1P09493 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
TPM1P09493 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TPM1P09493 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TPM1P09493 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.64■□□□□ 0.58
TPM1P09493 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TPM1P09493 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TPM1P09493 AC005052.1-201ENST00000625181 2492 ntBASIC18.64■□□□□ 0.58
TPM1P09493 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.64■□□□□ 0.57
TPM1P09493 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM1P09493 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
TPM1P09493 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM1P09493 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.64■□□□□ 0.57
TPM1P09493 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM1P09493 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.64■□□□□ 0.57
TPM1P09493 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM1P09493 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.64■□□□□ 0.57
TPM1P09493 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.64■□□□□ 0.57
TPM1P09493 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.64■□□□□ 0.57
TPM1P09493 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
TPM1P09493 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TPM1P09493 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.64■□□□□ 0.57
TPM1P09493 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM1P09493 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TPM1P09493 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.64■□□□□ 0.57
TPM1P09493 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM1P09493 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.64■□□□□ 0.57
TPM1P09493 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.64■□□□□ 0.57
TPM1P09493 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
TPM1P09493 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM1P09493 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
TPM1P09493 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.63■□□□□ 0.57
TPM1P09493 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TPM1P09493 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.63■□□□□ 0.57
TPM1P09493 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TPM1P09493 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TPM1P09493 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM1P09493 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.63■□□□□ 0.57
TPM1P09493 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
TPM1P09493 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.63■□□□□ 0.57
TPM1P09493 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TPM1P09493 RN7SL606P-201ENST00000472779 293 ntBASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms