Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
PCDHGA1Q9Y5H4 ABCB10P1-201ENST00000614297 2181 ntBASIC23.3■■□□□ 1.32
PCDHGA1Q9Y5H4 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHGA1Q9Y5H4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.29■■□□□ 1.32
PCDHGA1Q9Y5H4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.29■■□□□ 1.32
PCDHGA1Q9Y5H4 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA1Q9Y5H4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA1Q9Y5H4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC23.28■■□□□ 1.32
PCDHGA1Q9Y5H4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.28■■□□□ 1.32
PCDHGA1Q9Y5H4 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.28■■□□□ 1.32
PCDHGA1Q9Y5H4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHGA1Q9Y5H4 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
PCDHGA1Q9Y5H4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 TSPY9P-201ENST00000440215 945 ntBASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 TSPY11P-201ENST00000442607 1045 ntBASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 AC120024.1-201ENST00000562672 995 ntBASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHGA1Q9Y5H4 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.26■■□□□ 1.31
PCDHGA1Q9Y5H4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA1Q9Y5H4 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA1Q9Y5H4 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHGA1Q9Y5H4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA1Q9Y5H4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA1Q9Y5H4 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHGA1Q9Y5H4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.25■■□□□ 1.31
PCDHGA1Q9Y5H4 AC092028.1-203ENST00000608262 953 ntBASIC23.25■■□□□ 1.31
PCDHGA1Q9Y5H4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.25■■□□□ 1.31
PCDHGA1Q9Y5H4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHGA1Q9Y5H4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHGA1Q9Y5H4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHGA1Q9Y5H4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.23■■□□□ 1.31
PCDHGA1Q9Y5H4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.23■■□□□ 1.31
PCDHGA1Q9Y5H4 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHGA1Q9Y5H4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDHGA1Q9Y5H4 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
PCDHGA1Q9Y5H4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHGA1Q9Y5H4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.22■■□□□ 1.31
PCDHGA1Q9Y5H4 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHGA1Q9Y5H4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.21■■□□□ 1.31
PCDHGA1Q9Y5H4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.21■■□□□ 1.31
PCDHGA1Q9Y5H4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGA1Q9Y5H4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGA1Q9Y5H4 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDHGA1Q9Y5H4 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
PCDHGA1Q9Y5H4 AC131281.2-201ENST00000520478 145 ntBASIC23.2■■□□□ 1.3
PCDHGA1Q9Y5H4 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.19■■□□□ 1.3
PCDHGA1Q9Y5H4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.19■■□□□ 1.3
PCDHGA1Q9Y5H4 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
PCDHGA1Q9Y5H4 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.19■■□□□ 1.3
PCDHGA1Q9Y5H4 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHGA1Q9Y5H4 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHGA1Q9Y5H4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.18■■□□□ 1.3
PCDHGA1Q9Y5H4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
PCDHGA1Q9Y5H4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHGA1Q9Y5H4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHGA1Q9Y5H4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHGA1Q9Y5H4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHGA1Q9Y5H4 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.18■■□□□ 1.3
PCDHGA1Q9Y5H4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHGA1Q9Y5H4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDHGA1Q9Y5H4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.17■■□□□ 1.3
PCDHGA1Q9Y5H4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
PCDHGA1Q9Y5H4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.17■■□□□ 1.3
PCDHGA1Q9Y5H4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.17■■□□□ 1.3
PCDHGA1Q9Y5H4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHGA1Q9Y5H4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.16■■□□□ 1.3
PCDHGA1Q9Y5H4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHGA1Q9Y5H4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHGA1Q9Y5H4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.16■■□□□ 1.3
PCDHGA1Q9Y5H4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.16■■□□□ 1.3
PCDHGA1Q9Y5H4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.16■■□□□ 1.3
PCDHGA1Q9Y5H4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHGA1Q9Y5H4 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 AL449106.1-201ENST00000608517 1980 ntBASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 AL136116.3-201ENST00000402907 1138 ntBASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
PCDHGA1Q9Y5H4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms