Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC60Q8IWA6 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC60Q8IWA6 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC60Q8IWA6 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC60Q8IWA6 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC60Q8IWA6 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC60Q8IWA6 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC60Q8IWA6 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC60Q8IWA6 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC60Q8IWA6 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC60Q8IWA6 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.93■■□□□ 1.9
CCDC60Q8IWA6 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC60Q8IWA6 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.92■■□□□ 1.9
CCDC60Q8IWA6 AL121749.1-202ENST00000609313 2153 ntBASIC26.92■■□□□ 1.9
CCDC60Q8IWA6 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.92■■□□□ 1.9
CCDC60Q8IWA6 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC60Q8IWA6 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC26.92■■□□□ 1.9
CCDC60Q8IWA6 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC60Q8IWA6 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.92■■□□□ 1.9
CCDC60Q8IWA6 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC60Q8IWA6 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC60Q8IWA6 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.91■■□□□ 1.9
CCDC60Q8IWA6 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC60Q8IWA6 LONRF2P2-201ENST00000439212 571 ntBASIC26.91■■□□□ 1.9
CCDC60Q8IWA6 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.91■■□□□ 1.9
CCDC60Q8IWA6 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC60Q8IWA6 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.91■■□□□ 1.9
CCDC60Q8IWA6 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC60Q8IWA6 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC60Q8IWA6 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC60Q8IWA6 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC60Q8IWA6 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC60Q8IWA6 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC60Q8IWA6 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.9■■□□□ 1.9
CCDC60Q8IWA6 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC60Q8IWA6 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
CCDC60Q8IWA6 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CCDC60Q8IWA6 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
CCDC60Q8IWA6 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.89■■□□□ 1.9
CCDC60Q8IWA6 MIR4508-201ENST00000584178 70 ntBASIC26.89■■□□□ 1.9
CCDC60Q8IWA6 AC019171.1-201ENST00000601251 1056 ntBASIC26.89■■□□□ 1.9
CCDC60Q8IWA6 AL451085.2-201ENST00000605085 799 ntBASIC26.89■■□□□ 1.9
CCDC60Q8IWA6 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
CCDC60Q8IWA6 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.89■■□□□ 1.89
CCDC60Q8IWA6 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC60Q8IWA6 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.88■■□□□ 1.89
CCDC60Q8IWA6 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC60Q8IWA6 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
CCDC60Q8IWA6 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC60Q8IWA6 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
CCDC60Q8IWA6 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC60Q8IWA6 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
CCDC60Q8IWA6 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC60Q8IWA6 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC26.86■■□□□ 1.89
CCDC60Q8IWA6 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.86■■□□□ 1.89
CCDC60Q8IWA6 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC60Q8IWA6 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC60Q8IWA6 KRT18P10-201ENST00000388836 1287 ntBASIC26.86■■□□□ 1.89
CCDC60Q8IWA6 YBX1P4-201ENST00000392794 808 ntBASIC26.86■■□□□ 1.89
CCDC60Q8IWA6 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC60Q8IWA6 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC60Q8IWA6 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.85■■□□□ 1.89
CCDC60Q8IWA6 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC60Q8IWA6 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC60Q8IWA6 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC26.85■■□□□ 1.89
CCDC60Q8IWA6 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC60Q8IWA6 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.84■■□□□ 1.89
CCDC60Q8IWA6 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CCDC60Q8IWA6 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
CCDC60Q8IWA6 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC60Q8IWA6 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
CCDC60Q8IWA6 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
CCDC60Q8IWA6 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
CCDC60Q8IWA6 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CCDC60Q8IWA6 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
CCDC60Q8IWA6 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
CCDC60Q8IWA6 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
CCDC60Q8IWA6 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
CCDC60Q8IWA6 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CCDC60Q8IWA6 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CCDC60Q8IWA6 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.81■■□□□ 1.88
CCDC60Q8IWA6 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.81■■□□□ 1.88
CCDC60Q8IWA6 AC103724.3-201ENST00000564481 992 ntBASIC26.81■■□□□ 1.88
CCDC60Q8IWA6 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CCDC60Q8IWA6 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.81■■□□□ 1.88
CCDC60Q8IWA6 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.81■■□□□ 1.88
CCDC60Q8IWA6 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
CCDC60Q8IWA6 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC60Q8IWA6 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.8■■□□□ 1.88
CCDC60Q8IWA6 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC60Q8IWA6 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
CCDC60Q8IWA6 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC60Q8IWA6 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC60Q8IWA6 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC60Q8IWA6 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC26.79■■□□□ 1.88
CCDC60Q8IWA6 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC60Q8IWA6 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC60Q8IWA6 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.79■■□□□ 1.88
CCDC60Q8IWA6 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.79■■□□□ 1.88
CCDC60Q8IWA6 AL035685.1-201ENST00000636663 812 ntBASIC26.79■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms