Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.62■□□□□ 0.25
PCNAP12004 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.62■□□□□ 0.25
PCNAP12004 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.62■□□□□ 0.25
PCNAP12004 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PCNAP12004 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.62■□□□□ 0.25
PCNAP12004 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.62■□□□□ 0.25
PCNAP12004 SPDYE21P-201ENST00000413323 827 ntBASIC16.62■□□□□ 0.25
PCNAP12004 NUS1P1-201ENST00000446295 882 ntBASIC16.62■□□□□ 0.25
PCNAP12004 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.62■□□□□ 0.25
PCNAP12004 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.62■□□□□ 0.25
PCNAP12004 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.62■□□□□ 0.25
PCNAP12004 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.62■□□□□ 0.25
PCNAP12004 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.62■□□□□ 0.25
PCNAP12004 AP001269.4-201ENST00000609611 512 ntBASIC16.62■□□□□ 0.25
PCNAP12004 AL121772.3-201ENST00000610840 674 ntBASIC16.62■□□□□ 0.25
PCNAP12004 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.62■□□□□ 0.25
PCNAP12004 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.62■□□□□ 0.25
PCNAP12004 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.62■□□□□ 0.25
PCNAP12004 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PCNAP12004 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PCNAP12004 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.62■□□□□ 0.25
PCNAP12004 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
PCNAP12004 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCNAP12004 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PCNAP12004 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.61■□□□□ 0.25
PCNAP12004 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.61■□□□□ 0.25
PCNAP12004 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.61■□□□□ 0.25
PCNAP12004 EGFEM1P-202ENST00000431685 1563 ntBASIC16.61■□□□□ 0.25
PCNAP12004 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PCNAP12004 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PCNAP12004 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
PCNAP12004 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
PCNAP12004 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.61■□□□□ 0.25
PCNAP12004 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PCNAP12004 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.61■□□□□ 0.25
PCNAP12004 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.61■□□□□ 0.25
PCNAP12004 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.61■□□□□ 0.25
PCNAP12004 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PCNAP12004 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PCNAP12004 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
PCNAP12004 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PCNAP12004 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PCNAP12004 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
PCNAP12004 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCNAP12004 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
PCNAP12004 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.6■□□□□ 0.25
PCNAP12004 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
PCNAP12004 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.6■□□□□ 0.25
PCNAP12004 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.6■□□□□ 0.25
PCNAP12004 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.6■□□□□ 0.25
PCNAP12004 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PCNAP12004 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
PCNAP12004 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms