RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 NISCHQ9Y2I1 1504 aa30.32■■■□□ 2.44
TCOF1-206ENST00000445265 DCAF8L2P0C7V8 631 aa28.46■■■□□ 2.15
TCOF1-206ENST00000445265 SUPT5HO00267 1087 aaKnown RBP27.98■■■□□ 2.07
TCOF1-206ENST00000445265 SHROOM4Q9ULL8 1493 aa27.79■■■□□ 2.04
TCOF1-206ENST00000445265 PCGF6Q9BYE7 350 aa26.44■■□□□ 1.82
TCOF1-206ENST00000445265 EHMT2Q96KQ7 1210 aa26.27■■□□□ 1.8
TCOF1-206ENST00000445265 FAM9AQ8IZU1 332 aaPredicted RBP26.12■■□□□ 1.77
TCOF1-206ENST00000445265 TRIM41Q8WV44 630 aa26.04■■□□□ 1.76
TCOF1-206ENST00000445265 CHIC1Q5VXU3 224 aa25.98■■□□□ 1.75
TCOF1-206ENST00000445265 ZEB1P37275 1124 aaPredicted RBP25.94■■□□□ 1.74
TCOF1-206ENST00000445265 HRCP23327 699 aa25.81■■□□□ 1.72
TCOF1-206ENST00000445265 APLP2Q06481 763 aa25.7■■□□□ 1.7
TCOF1-206ENST00000445265 TRIM26Q12899 539 aaPredicted RBP25.66■■□□□ 1.7
TCOF1-206ENST00000445265 LOC105371045A0A1W2PR82 267 aa25.54■■□□□ 1.68
TCOF1-206ENST00000445265 CCER1Q8TC90 406 aaPredicted RBP25.48■■□□□ 1.67
TCOF1-206ENST00000445265 TTBK1Q5TCY1 1321 aaPredicted RBP25.47■■□□□ 1.67
TCOF1-206ENST00000445265 ZCCHC6Q5VYS8 1495 aaKnown RBP25.37■■□□□ 1.65
TCOF1-206ENST00000445265 CENPBP07199 599 aaPredicted RBP25.31■■□□□ 1.64
TCOF1-206ENST00000445265 UBTFP17480 764 aaKnown RBP25.3■■□□□ 1.64
TCOF1-206ENST00000445265 PELP1Q8IZL8 1130 aaKnown RBP25.29■■□□□ 1.64
TCOF1-206ENST00000445265 PPARGC1BQ86YN6 1023 aaKnown RBP25.14■■□□□ 1.61
TCOF1-206ENST00000445265 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
TCOF1-206ENST00000445265 RANGAP1P46060 587 aaPredicted RBP25.05■■□□□ 1.6
TCOF1-206ENST00000445265 ABCC9O60706 1549 aa24.81■■□□□ 1.56
TCOF1-206ENST00000445265 DCAF1Q9Y4B6 1507 aa24.77■■□□□ 1.56
TCOF1-206ENST00000445265 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.65■■□□□ 1.54
TCOF1-206ENST00000445265 YTHDC1Q96MU7 727 aaKnown RBP24.64■■□□□ 1.54
TCOF1-206ENST00000445265 ATP1B4Q9UN42 357 aaPredicted RBP24.59■■□□□ 1.53
TCOF1-206ENST00000445265 MYO15BQ96JP2 1530 aa24.55■■□□□ 1.52
TCOF1-206ENST00000445265 HNRNPUL2Q1KMD3 747 aaKnown RBP24.54■■□□□ 1.52
TCOF1-206ENST00000445265 SCRIBQ14160 1630 aa24.53■■□□□ 1.52
TCOF1-206ENST00000445265 DIEXFQ68CQ4 756 aaKnown RBP24.48■■□□□ 1.51
TCOF1-206ENST00000445265 MYT1Q01538 1121 aa24.39■■□□□ 1.49
TCOF1-206ENST00000445265 PABPN1Q86U42 306 aaKnown RBP eCLIP24.33■■□□□ 1.48
TCOF1-206ENST00000445265 NEFLP07196 543 aa24.28■■□□□ 1.48
TCOF1-206ENST00000445265 CSRNP3Q8WYN3 585 aa24.28■■□□□ 1.48
TCOF1-206ENST00000445265 ITGAEP38570 1179 aa24.27■■□□□ 1.48
TCOF1-206ENST00000445265 RSF1Q96T23 1441 aaPredicted RBP24.26■■□□□ 1.47
TCOF1-206ENST00000445265 ZNF316A6NFI3 1004 aaPredicted RBP24.09■■□□□ 1.45
TCOF1-206ENST00000445265 ERICH6Q7L0X2 663 aa24.04■■□□□ 1.44
TCOF1-206ENST00000445265 GTF3C3Q9Y5Q9 886 aa24.01■■□□□ 1.43
TCOF1-206ENST00000445265 ACIN1Q9UKV3 1341 aaKnown RBP23.99■■□□□ 1.43
TCOF1-206ENST00000445265 NACADO15069 1562 aa23.94■■□□□ 1.42
TCOF1-206ENST00000445265 RB1CC1Q8TDY2 1594 aa23.92■■□□□ 1.42
TCOF1-206ENST00000445265 FAM50AQ14320 339 aaKnown RBP23.84■■□□□ 1.41
TCOF1-206ENST00000445265 EEA1Q15075 1411 aa23.79■■□□□ 1.4
TCOF1-206ENST00000445265 CEP162Q5TB80 1403 aa23.69■■□□□ 1.38
TCOF1-206ENST00000445265 CECR2Q9BXF3 1484 aa23.68■■□□□ 1.38
TCOF1-206ENST00000445265 NEUROD1Q13562 356 aa23.67■■□□□ 1.38
TCOF1-206ENST00000445265 BAZ1AQ9NRL2 1556 aaPredicted RBP23.65■■□□□ 1.38
TCOF1-206ENST00000445265 GOLGA3Q08378 1498 aa23.62■■□□□ 1.37
TCOF1-206ENST00000445265 TNIKQ9UKE5 1360 aa23.61■■□□□ 1.37
TCOF1-206ENST00000445265 CLIP1P30622 1438 aa23.6■■□□□ 1.37
TCOF1-206ENST00000445265 SCAF1Q9H7N4 1312 aaKnown RBP23.57■■□□□ 1.36
TCOF1-206ENST00000445265 WRNQ14191 1432 aaPredicted RBP eCLIP23.53■■□□□ 1.36
TCOF1-206ENST00000445265 ANP32CO43423 234 aa23.52■■□□□ 1.36
TCOF1-206ENST00000445265 POLR3GLQ9BT43 218 aa23.5■■□□□ 1.35
TCOF1-206ENST00000445265 MROH2BQ7Z745 1585 aa23.49■■□□□ 1.35
TCOF1-206ENST00000445265 CLSPNQ9HAW4 1339 aa23.49■■□□□ 1.35
TCOF1-206ENST00000445265 TRIM52Q96A61 297 aa23.48■■□□□ 1.35
TCOF1-206ENST00000445265 P3H3Q8IVL6 736 aa23.44■■□□□ 1.34
TCOF1-206ENST00000445265 CEP164Q9UPV0 1460 aa23.42■■□□□ 1.34
TCOF1-206ENST00000445265 BCANQ96GW7 911 aa23.34■■□□□ 1.33
TCOF1-206ENST00000445265 MIER1Q8N108 512 aa23.33■■□□□ 1.33
TCOF1-206ENST00000445265 BAZ1BQ9UIG0 1483 aaKnown RBP23.31■■□□□ 1.32
TCOF1-206ENST00000445265 SOGA1O94964 1423 aa23.29■■□□□ 1.32
TCOF1-206ENST00000445265 CNGB1Q14028 1251 aaPredicted RBP23.29■■□□□ 1.32
TCOF1-206ENST00000445265 CCDC88BA6NC98 1476 aa23.26■■□□□ 1.31
TCOF1-206ENST00000445265 TONSLQ96HA7 1378 aa23.21■■□□□ 1.31
TCOF1-206ENST00000445265 WIZO95785 1651 aa23.2■■□□□ 1.3
TCOF1-206ENST00000445265 ABCC8Q09428 1581 aa23.18■■□□□ 1.3
TCOF1-206ENST00000445265 KIF27Q86VH2 1401 aa23.16■■□□□ 1.3
TCOF1-206ENST00000445265 DDX10Q13206 875 aaKnown RBP23.15■■□□□ 1.3
TCOF1-206ENST00000445265 TOP2AP11388 1531 aaKnown RBP23.14■■□□□ 1.3
TCOF1-206ENST00000445265 CDK11AQ9UQ88 783 aaPredicted RBP23.13■■□□□ 1.29
TCOF1-206ENST00000445265 VPS8Q8N3P4 1428 aa23.07■■□□□ 1.28
TCOF1-206ENST00000445265 DAXXQ9UER7 740 aaPredicted RBP23.06■■□□□ 1.28
TCOF1-206ENST00000445265 MYT1LQ9UL68 1186 aa23.06■■□□□ 1.28
TCOF1-206ENST00000445265 ZNF326Q5BKZ1 582 aaKnown RBP23.05■■□□□ 1.28
TCOF1-206ENST00000445265 FKBP8Q14318 412 aa23.05■■□□□ 1.28
TCOF1-206ENST00000445265 MTUS2Q5JR59 1369 aa23.01■■□□□ 1.27
TCOF1-206ENST00000445265 ARID3CA6NKF2 412 aa22.99■■□□□ 1.27
TCOF1-206ENST00000445265 HNRNPUQ00839 825 aaKnown RBP eCLIP22.92■■□□□ 1.26
TCOF1-206ENST00000445265 FBLN2P98095 1184 aa22.92■■□□□ 1.26
TCOF1-206ENST00000445265 RTL5Q5HYW3 569 aaPredicted RBP22.92■■□□□ 1.26
TCOF1-206ENST00000445265 CCNB3Q8WWL7 1395 aa22.91■■□□□ 1.26
TCOF1-206ENST00000445265 SMARCA2P51531 1590 aa22.89■■□□□ 1.25
TCOF1-206ENST00000445265 SMARCA4P51532 1647 aa22.88■■□□□ 1.25
TCOF1-206ENST00000445265 CHIC2Q9UKJ5 165 aa22.85■■□□□ 1.25
TCOF1-206ENST00000445265 ZNF777Q9ULD5 760 aaPredicted RBP22.84■■□□□ 1.25
TCOF1-206ENST00000445265 FHAD1B1AJZ9 1412 aa22.8■■□□□ 1.24
TCOF1-206ENST00000445265 HIRIP3Q9BW71 556 aaPredicted RBP22.78■■□□□ 1.24
TCOF1-206ENST00000445265 CARMIL1Q5VZK9 1371 aa22.75■■□□□ 1.23
TCOF1-206ENST00000445265 CUX2O14529 1486 aa22.74■■□□□ 1.23
TCOF1-206ENST00000445265 FAM9BQ8IZU0 186 aa22.74■■□□□ 1.23
TCOF1-206ENST00000445265 EIF4G2P78344 907 aaKnown RBP eCLIP22.73■■□□□ 1.23
TCOF1-206ENST00000445265 KANK4Q5T7N3 995 aaPredicted RBP22.73■■□□□ 1.23
TCOF1-206ENST00000445265 TIMELESSQ9UNS1 1208 aa22.73■■□□□ 1.23
TCOF1-206ENST00000445265 RUSC2Q8N2Y8 1516 aa22.72■■□□□ 1.23
TCOF1-206ENST00000445265 RRP7BPQ9NSQ0 103 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms