RNA–Protein interactions for RNA: ENST00000393357.6

PHTF1-205, Transcript of putative homeodomain transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PHTF1, Length 3,244 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-205ENST00000393357 NISCHQ9Y2I1 1504 aa30.5■■■□□ 2.47
PHTF1-205ENST00000393357 SHROOM4Q9ULL8 1493 aa28.21■■■□□ 2.11
PHTF1-205ENST00000393357 SUPT5HO00267 1087 aaKnown RBP28.11■■■□□ 2.09
PHTF1-205ENST00000393357 PPARGC1BQ86YN6 1023 aaKnown RBP27.6■■■□□ 2.01
PHTF1-205ENST00000393357 PCGF6Q9BYE7 350 aa27.59■■■□□ 2.01
PHTF1-205ENST00000393357 HRCP23327 699 aa27.44■■□□□ 1.98
PHTF1-205ENST00000393357 DCAF8L2P0C7V8 631 aa27.12■■□□□ 1.93
PHTF1-205ENST00000393357 CHIC1Q5VXU3 224 aa26.9■■□□□ 1.9
PHTF1-205ENST00000393357 MYO15BQ96JP2 1530 aa26.9■■□□□ 1.9
PHTF1-205ENST00000393357 LOC105371045A0A1W2PR82 267 aa26.82■■□□□ 1.88
PHTF1-205ENST00000393357 EHMT2Q96KQ7 1210 aa26.65■■□□□ 1.86
PHTF1-205ENST00000393357 FAM9AQ8IZU1 332 aaPredicted RBP26.24■■□□□ 1.79
PHTF1-205ENST00000393357 TRIM26Q12899 539 aaPredicted RBP26.14■■□□□ 1.77
PHTF1-205ENST00000393357 SCAF1Q9H7N4 1312 aaKnown RBP26.12■■□□□ 1.77
PHTF1-205ENST00000393357 CCDC180Q9P1Z9 1646 aa26.06■■□□□ 1.76
PHTF1-205ENST00000393357 TTBK1Q5TCY1 1321 aaPredicted RBP25.85■■□□□ 1.73
PHTF1-205ENST00000393357 PELP1Q8IZL8 1130 aaKnown RBP25.84■■□□□ 1.73
PHTF1-205ENST00000393357 ZCCHC6Q5VYS8 1495 aaKnown RBP25.77■■□□□ 1.72
PHTF1-205ENST00000393357 DCAF1Q9Y4B6 1507 aa25.72■■□□□ 1.71
PHTF1-205ENST00000393357 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.64■■□□□ 1.7
PHTF1-205ENST00000393357 ZEB1P37275 1124 aaPredicted RBP25.62■■□□□ 1.69
PHTF1-205ENST00000393357 TRIM41Q8WV44 630 aa25.61■■□□□ 1.69
PHTF1-205ENST00000393357 NEUROD1Q13562 356 aa25.56■■□□□ 1.68
PHTF1-205ENST00000393357 GTF3C3Q9Y5Q9 886 aa25.5■■□□□ 1.67
PHTF1-205ENST00000393357 CCER1Q8TC90 406 aaPredicted RBP25.49■■□□□ 1.67
PHTF1-205ENST00000393357 YTHDC1Q96MU7 727 aaKnown RBP25.46■■□□□ 1.67
PHTF1-205ENST00000393357 ACIN1Q9UKV3 1341 aaKnown RBP25.37■■□□□ 1.65
PHTF1-205ENST00000393357 DIEXFQ68CQ4 756 aaKnown RBP25.23■■□□□ 1.63
PHTF1-205ENST00000393357 CENPBP07199 599 aaPredicted RBP25.14■■□□□ 1.62
PHTF1-205ENST00000393357 RANGAP1P46060 587 aaPredicted RBP24.71■■□□□ 1.55
PHTF1-205ENST00000393357 HNRNPUL2Q1KMD3 747 aaKnown RBP24.69■■□□□ 1.54
PHTF1-205ENST00000393357 MIER1Q8N108 512 aa24.67■■□□□ 1.54
PHTF1-205ENST00000393357 RSF1Q96T23 1441 aaPredicted RBP24.63■■□□□ 1.53
PHTF1-205ENST00000393357 MYT1Q01538 1121 aa24.58■■□□□ 1.53
PHTF1-205ENST00000393357 ZNF316A6NFI3 1004 aaPredicted RBP24.58■■□□□ 1.53
PHTF1-205ENST00000393357 UBTFP17480 764 aaKnown RBP24.55■■□□□ 1.52
PHTF1-205ENST00000393357 RB1CC1Q8TDY2 1594 aa24.54■■□□□ 1.52
PHTF1-205ENST00000393357 SCRIBQ14160 1630 aa24.47■■□□□ 1.51
PHTF1-205ENST00000393357 BCANQ96GW7 911 aa24.29■■□□□ 1.48
PHTF1-205ENST00000393357 ABCC9O60706 1549 aa24.27■■□□□ 1.48
PHTF1-205ENST00000393357 CECR2Q9BXF3 1484 aa24.21■■□□□ 1.47
PHTF1-205ENST00000393357 NACADO15069 1562 aa24.11■■□□□ 1.45
PHTF1-205ENST00000393357 CEP162Q5TB80 1403 aa24.07■■□□□ 1.44
PHTF1-205ENST00000393357 SUPT16HQ9Y5B9 1047 aaKnown RBP24.05■■□□□ 1.44
PHTF1-205ENST00000393357 APLP2Q06481 763 aa24.05■■□□□ 1.44
PHTF1-205ENST00000393357 ITGAEP38570 1179 aa24.02■■□□□ 1.44
PHTF1-205ENST00000393357 SOGA1O94964 1423 aa23.99■■□□□ 1.43
PHTF1-205ENST00000393357 ABCC8Q09428 1581 aa23.96■■□□□ 1.43
PHTF1-205ENST00000393357 MROH2BQ7Z745 1585 aa23.95■■□□□ 1.42
PHTF1-205ENST00000393357 CSRNP3Q8WYN3 585 aa23.95■■□□□ 1.42
PHTF1-205ENST00000393357 KCNH8Q96L42 1107 aa23.95■■□□□ 1.42
PHTF1-205ENST00000393357 CCDC88BA6NC98 1476 aa23.94■■□□□ 1.42
PHTF1-205ENST00000393357 TSHZ2Q9NRE2 1034 aa23.89■■□□□ 1.41
PHTF1-205ENST00000393357 RUSC2Q8N2Y8 1516 aa23.87■■□□□ 1.41
PHTF1-205ENST00000393357 WIZO95785 1651 aa23.84■■□□□ 1.41
PHTF1-205ENST00000393357 BCL11AQ9H165 835 aa23.8■■□□□ 1.4
PHTF1-205ENST00000393357 ANP32EQ9BTT0 268 aa23.78■■□□□ 1.4
PHTF1-205ENST00000393357 FKBP8Q14318 412 aa23.76■■□□□ 1.39
PHTF1-205ENST00000393357 HIRIP3Q9BW71 556 aaPredicted RBP23.74■■□□□ 1.39
PHTF1-205ENST00000393357 TNIKQ9UKE5 1360 aa23.67■■□□□ 1.38
PHTF1-205ENST00000393357 TRIM52Q96A61 297 aa23.64■■□□□ 1.37
PHTF1-205ENST00000393357 WRNQ14191 1432 aaPredicted RBP eCLIP23.62■■□□□ 1.37
PHTF1-205ENST00000393357 DDX10Q13206 875 aaKnown RBP23.6■■□□□ 1.37
PHTF1-205ENST00000393357 IRX6P78412 446 aaPredicted RBP23.52■■□□□ 1.36
PHTF1-205ENST00000393357 PABPN1Q86U42 306 aaKnown RBP eCLIP23.52■■□□□ 1.36
PHTF1-205ENST00000393357 CLIP1P30622 1438 aa23.5■■□□□ 1.35
PHTF1-205ENST00000393357 NEFLP07196 543 aa23.48■■□□□ 1.35
PHTF1-205ENST00000393357 KANK4Q5T7N3 995 aaPredicted RBP23.46■■□□□ 1.35
PHTF1-205ENST00000393357 BAZ1AQ9NRL2 1556 aaPredicted RBP23.43■■□□□ 1.34
PHTF1-205ENST00000393357 ATP1B4Q9UN42 357 aaPredicted RBP23.42■■□□□ 1.34
PHTF1-205ENST00000393357 RBM19Q9Y4C8 960 aaKnown RBP23.42■■□□□ 1.34
PHTF1-205ENST00000393357 GOLGA3Q08378 1498 aa23.41■■□□□ 1.34
PHTF1-205ENST00000393357 UNC13AQ9UPW8 1703 aa23.36■■□□□ 1.33
PHTF1-205ENST00000393357 SIN3AQ96ST3 1273 aa23.35■■□□□ 1.33
PHTF1-205ENST00000393357 DHX57Q6P158 1386 aaKnown RBP23.35■■□□□ 1.33
PHTF1-205ENST00000393357 ERICH6Q7L0X2 663 aa23.35■■□□□ 1.33
PHTF1-205ENST00000393357 CNGB1Q14028 1251 aaPredicted RBP23.3■■□□□ 1.32
PHTF1-205ENST00000393357 SMARCA4P51532 1647 aa23.24■■□□□ 1.31
PHTF1-205ENST00000393357 FAM50AQ14320 339 aaKnown RBP23.23■■□□□ 1.31
PHTF1-205ENST00000393357 CLSPNQ9HAW4 1339 aa23.23■■□□□ 1.31
PHTF1-205ENST00000393357 VPS8Q8N3P4 1428 aa23.22■■□□□ 1.31
PHTF1-205ENST00000393357 EIF4G1Q04637 1599 aaKnown RBP23.21■■□□□ 1.31
PHTF1-205ENST00000393357 RAPGEF2Q9Y4G8 1499 aa23.2■■□□□ 1.3
PHTF1-205ENST00000393357 TOP2AP11388 1531 aaKnown RBP23.19■■□□□ 1.3
PHTF1-205ENST00000393357 SENP3-EIF4A1A0A087X0R7 540 aa23.17■■□□□ 1.3
PHTF1-205ENST00000393357 MSH5O43196 834 aa23.16■■□□□ 1.3
PHTF1-205ENST00000393357 P3H3Q8IVL6 736 aa23.13■■□□□ 1.29
PHTF1-205ENST00000393357 CEP164Q9UPV0 1460 aa23.12■■□□□ 1.29
PHTF1-205ENST00000393357 EEA1Q15075 1411 aa23.11■■□□□ 1.29
PHTF1-205ENST00000393357 ANP32CO43423 234 aa23.1■■□□□ 1.29
PHTF1-205ENST00000393357 BICRAQ9NZM4 1560 aa23.08■■□□□ 1.29
PHTF1-205ENST00000393357 HNRNPUQ00839 825 aaKnown RBP eCLIP23.08■■□□□ 1.29
PHTF1-205ENST00000393357 SMARCA2P51531 1590 aa23.07■■□□□ 1.28
PHTF1-205ENST00000393357 NBR1Q14596 966 aa23.05■■□□□ 1.28
PHTF1-205ENST00000393357 CDK11AQ9UQ88 783 aaPredicted RBP22.99■■□□□ 1.27
PHTF1-205ENST00000393357 RAB3GAP2Q9H2M9 1393 aa22.97■■□□□ 1.27
PHTF1-205ENST00000393357 KIF21BO75037 1637 aa22.95■■□□□ 1.26
PHTF1-205ENST00000393357 CCNB3Q8WWL7 1395 aa22.91■■□□□ 1.26
PHTF1-205ENST00000393357 B4GALNT3Q6L9W6 998 aa22.9■■□□□ 1.26
PHTF1-205ENST00000393357 PEG3Q9GZU2 1588 aa22.89■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms