Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A1P02462 AC015922.1-201ENST00000421102 1152 ntBASIC20.68■□□□□ 0.9
COL4A1P02462 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A1P02462 TSPY16P-201ENST00000449843 468 ntBASIC20.68■□□□□ 0.9
COL4A1P02462 AC069120.2-201ENST00000524091 540 ntBASIC20.68■□□□□ 0.9
COL4A1P02462 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.68■□□□□ 0.9
COL4A1P02462 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A1P02462 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL4A1P02462 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A1P02462 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A1P02462 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A1P02462 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A1P02462 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A1P02462 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
COL4A1P02462 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A1P02462 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.68■□□□□ 0.9
COL4A1P02462 NOC2LP2-201ENST00000407594 1944 ntBASIC20.68■□□□□ 0.9
COL4A1P02462 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A1P02462 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL4A1P02462 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A1P02462 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A1P02462 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A1P02462 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A1P02462 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A1P02462 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A1P02462 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A1P02462 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A1P02462 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
COL4A1P02462 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A1P02462 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A1P02462 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A1P02462 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A1P02462 AC016396.2-201ENST00000562575 1417 ntBASIC20.67■□□□□ 0.9
COL4A1P02462 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC20.67■□□□□ 0.9
COL4A1P02462 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
COL4A1P02462 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL4A1P02462 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
COL4A1P02462 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A1P02462 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A1P02462 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A1P02462 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A1P02462 AC008761.3-201ENST00000624803 892 ntBASIC20.67■□□□□ 0.9
COL4A1P02462 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A1P02462 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A1P02462 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL4A1P02462 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A1P02462 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.66■□□□□ 0.9
COL4A1P02462 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.66■□□□□ 0.9
COL4A1P02462 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 CDK2AP2P3-201ENST00000422476 372 ntBASIC20.66■□□□□ 0.9
COL4A1P02462 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.66■□□□□ 0.9
COL4A1P02462 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC20.66■□□□□ 0.9
COL4A1P02462 RBM7-207ENST00000544582 692 ntTSL 3 BASIC20.66■□□□□ 0.9
COL4A1P02462 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A1P02462 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.66■□□□□ 0.9
COL4A1P02462 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.66■□□□□ 0.9
COL4A1P02462 AC239800.4-201ENST00000603712 296 ntBASIC20.66■□□□□ 0.9
COL4A1P02462 AF228730.6-201ENST00000641497 218 ntBASIC20.66■□□□□ 0.9
COL4A1P02462 AC084121.3-201ENST00000641716 218 ntBASIC20.66■□□□□ 0.9
COL4A1P02462 AC105233.6-201ENST00000642093 218 ntBASIC20.66■□□□□ 0.9
COL4A1P02462 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A1P02462 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL4A1P02462 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.65■□□□□ 0.9
COL4A1P02462 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC20.65■□□□□ 0.9
COL4A1P02462 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 IGHV3-62-201ENST00000520057 340 ntBASIC20.65■□□□□ 0.9
COL4A1P02462 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.65■□□□□ 0.9
COL4A1P02462 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.65■□□□□ 0.9
COL4A1P02462 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.65■□□□□ 0.9
COL4A1P02462 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL4A1P02462 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.65■□□□□ 0.9
COL4A1P02462 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A1P02462 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.65■□□□□ 0.9
COL4A1P02462 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.64■□□□□ 0.9
COL4A1P02462 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL4A1P02462 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.64■□□□□ 0.9
COL4A1P02462 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
COL4A1P02462 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.64■□□□□ 0.9
COL4A1P02462 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.64■□□□□ 0.9
COL4A1P02462 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms