RNA–Protein interactions for RNA: ENST00000264723.8

CSPG5-201, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CSPG5, Length 4,080 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-201ENST00000264723 NISCHQ9Y2I1 1504 aa36.97■■■■□ 3.51
CSPG5-201ENST00000264723 DCAF8L2P0C7V8 631 aa35.43■■■■□ 3.26
CSPG5-201ENST00000264723 SHROOM4Q9ULL8 1493 aa34.32■■■■□ 3.09
CSPG5-201ENST00000264723 SUPT5HO00267 1087 aaKnown RBP34.24■■■■□ 3.07
CSPG5-201ENST00000264723 EHMT2Q96KQ7 1210 aa32.57■■■□□ 2.81
CSPG5-201ENST00000264723 PCGF6Q9BYE7 350 aa32.44■■■□□ 2.78
CSPG5-201ENST00000264723 FAM9AQ8IZU1 332 aaPredicted RBP32.04■■■□□ 2.72
CSPG5-201ENST00000264723 CHIC1Q5VXU3 224 aa31.96■■■□□ 2.71
CSPG5-201ENST00000264723 LOC105371045A0A1W2PR82 267 aa31.8■■■□□ 2.68
CSPG5-201ENST00000264723 HRCP23327 699 aa31.55■■■□□ 2.64
CSPG5-201ENST00000264723 PPARGC1BQ86YN6 1023 aaKnown RBP31.54■■■□□ 2.64
CSPG5-201ENST00000264723 TRIM41Q8WV44 630 aa31.47■■■□□ 2.63
CSPG5-201ENST00000264723 TTBK1Q5TCY1 1321 aaPredicted RBP31.41■■■□□ 2.62
CSPG5-201ENST00000264723 ABCC9O60706 1549 aa31.15■■■□□ 2.58
CSPG5-201ENST00000264723 RANGAP1P46060 587 aaPredicted RBP31.02■■■□□ 2.56
CSPG5-201ENST00000264723 TRIM26Q12899 539 aaPredicted RBP30.98■■■□□ 2.55
CSPG5-201ENST00000264723 ZCCHC6Q5VYS8 1495 aaKnown RBP30.96■■■□□ 2.55
CSPG5-201ENST00000264723 MYO15BQ96JP2 1530 aa30.92■■■□□ 2.54
CSPG5-201ENST00000264723 UBTFP17480 764 aaKnown RBP30.69■■■□□ 2.5
CSPG5-201ENST00000264723 PABPN1Q86U42 306 aaKnown RBP eCLIP30.69■■■□□ 2.5
CSPG5-201ENST00000264723 APLP2Q06481 763 aa30.68■■■□□ 2.5
CSPG5-201ENST00000264723 CCER1Q8TC90 406 aaPredicted RBP30.67■■■□□ 2.5
CSPG5-201ENST00000264723 ZEB1P37275 1124 aaPredicted RBP30.57■■■□□ 2.48
CSPG5-201ENST00000264723 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.35■■■□□ 2.45
CSPG5-201ENST00000264723 CCDC180Q9P1Z9 1646 aa30.3■■■□□ 2.44
CSPG5-201ENST00000264723 SCRIBQ14160 1630 aa30.18■■■□□ 2.42
CSPG5-201ENST00000264723 ATP1B4Q9UN42 357 aaPredicted RBP30.17■■■□□ 2.42
CSPG5-201ENST00000264723 YTHDC1Q96MU7 727 aaKnown RBP30.07■■■□□ 2.4
CSPG5-201ENST00000264723 DCAF1Q9Y4B6 1507 aa29.99■■■□□ 2.39
CSPG5-201ENST00000264723 HNRNPUL2Q1KMD3 747 aaKnown RBP29.91■■■□□ 2.38
CSPG5-201ENST00000264723 CENPBP07199 599 aaPredicted RBP29.85■■■□□ 2.37
CSPG5-201ENST00000264723 RSF1Q96T23 1441 aaPredicted RBP29.79■■■□□ 2.36
CSPG5-201ENST00000264723 DIEXFQ68CQ4 756 aaKnown RBP29.67■■■□□ 2.34
CSPG5-201ENST00000264723 ITGAEP38570 1179 aa29.66■■■□□ 2.34
CSPG5-201ENST00000264723 CECR2Q9BXF3 1484 aa29.39■■■□□ 2.3
CSPG5-201ENST00000264723 CSRNP3Q8WYN3 585 aa29.38■■■□□ 2.29
CSPG5-201ENST00000264723 PELP1Q8IZL8 1130 aaKnown RBP29.38■■■□□ 2.29
CSPG5-201ENST00000264723 GTF3C3Q9Y5Q9 886 aa29.36■■■□□ 2.29
CSPG5-201ENST00000264723 SCAF1Q9H7N4 1312 aaKnown RBP29.31■■■□□ 2.28
CSPG5-201ENST00000264723 RB1CC1Q8TDY2 1594 aa29.24■■■□□ 2.27
CSPG5-201ENST00000264723 ACIN1Q9UKV3 1341 aaKnown RBP29.18■■■□□ 2.26
CSPG5-201ENST00000264723 NEUROD1Q13562 356 aa29.17■■■□□ 2.26
CSPG5-201ENST00000264723 NACADO15069 1562 aa29.11■■■□□ 2.25
CSPG5-201ENST00000264723 ZNF316A6NFI3 1004 aaPredicted RBP29.08■■■□□ 2.25
CSPG5-201ENST00000264723 P3H3Q8IVL6 736 aa29.02■■■□□ 2.24
CSPG5-201ENST00000264723 MROH2BQ7Z745 1585 aa29■■■□□ 2.23
CSPG5-201ENST00000264723 FAM50AQ14320 339 aaKnown RBP28.92■■■□□ 2.22
CSPG5-201ENST00000264723 CEP162Q5TB80 1403 aa28.85■■■□□ 2.21
CSPG5-201ENST00000264723 SOGA1O94964 1423 aa28.81■■■□□ 2.2
CSPG5-201ENST00000264723 MIER1Q8N108 512 aa28.75■■■□□ 2.19
CSPG5-201ENST00000264723 ARID3CA6NKF2 412 aa28.73■■■□□ 2.19
CSPG5-201ENST00000264723 ABCC8Q09428 1581 aa28.72■■■□□ 2.19
CSPG5-201ENST00000264723 WIZO95785 1651 aa28.69■■■□□ 2.18
CSPG5-201ENST00000264723 CCDC88BA6NC98 1476 aa28.69■■■□□ 2.18
CSPG5-201ENST00000264723 BAZ1AQ9NRL2 1556 aaPredicted RBP28.64■■■□□ 2.18
CSPG5-201ENST00000264723 FBLN2P98095 1184 aa28.62■■■□□ 2.17
CSPG5-201ENST00000264723 CNGB1Q14028 1251 aaPredicted RBP28.59■■■□□ 2.17
CSPG5-201ENST00000264723 BCANQ96GW7 911 aa28.56■■■□□ 2.16
CSPG5-201ENST00000264723 CLIP1P30622 1438 aa28.54■■■□□ 2.16
CSPG5-201ENST00000264723 WRNQ14191 1432 aaPredicted RBP eCLIP28.54■■■□□ 2.16
CSPG5-201ENST00000264723 TNIKQ9UKE5 1360 aa28.54■■■□□ 2.16
CSPG5-201ENST00000264723 POLR3GLQ9BT43 218 aa28.51■■■□□ 2.16
CSPG5-201ENST00000264723 BAZ1BQ9UIG0 1483 aaKnown RBP28.5■■■□□ 2.15
CSPG5-201ENST00000264723 NEFLP07196 543 aa28.45■■■□□ 2.15
CSPG5-201ENST00000264723 RUSC2Q8N2Y8 1516 aa28.42■■■□□ 2.14
CSPG5-201ENST00000264723 TRIM52Q96A61 297 aa28.42■■■□□ 2.14
CSPG5-201ENST00000264723 GOLGA3Q08378 1498 aa28.4■■■□□ 2.14
CSPG5-201ENST00000264723 MYT1LQ9UL68 1186 aa28.34■■■□□ 2.13
CSPG5-201ENST00000264723 HIRIP3Q9BW71 556 aaPredicted RBP28.32■■■□□ 2.12
CSPG5-201ENST00000264723 EEA1Q15075 1411 aa28.26■■■□□ 2.11
CSPG5-201ENST00000264723 DDX10Q13206 875 aaKnown RBP28.23■■■□□ 2.11
CSPG5-201ENST00000264723 KANK4Q5T7N3 995 aaPredicted RBP28.15■■■□□ 2.1
CSPG5-201ENST00000264723 CEP164Q9UPV0 1460 aa28.14■■■□□ 2.09
CSPG5-201ENST00000264723 ZNF326Q5BKZ1 582 aaKnown RBP28.08■■■□□ 2.09
CSPG5-201ENST00000264723 ZNF777Q9ULD5 760 aaPredicted RBP28.07■■■□□ 2.08
CSPG5-201ENST00000264723 TOP2AP11388 1531 aaKnown RBP28.05■■■□□ 2.08
CSPG5-201ENST00000264723 ERICH6Q7L0X2 663 aa28.04■■■□□ 2.08
CSPG5-201ENST00000264723 CHIC2Q9UKJ5 165 aa28.03■■■□□ 2.08
CSPG5-201ENST00000264723 MYT1Q01538 1121 aa28■■■□□ 2.07
CSPG5-201ENST00000264723 ANP32CO43423 234 aa27.99■■■□□ 2.07
CSPG5-201ENST00000264723 KIF27Q86VH2 1401 aa27.99■■■□□ 2.07
CSPG5-201ENST00000264723 SIN3AQ96ST3 1273 aa27.97■■■□□ 2.07
CSPG5-201ENST00000264723 FKBP8Q14318 412 aa27.96■■■□□ 2.07
CSPG5-201ENST00000264723 VPS8Q8N3P4 1428 aa27.93■■■□□ 2.06
CSPG5-201ENST00000264723 RAPGEF2Q9Y4G8 1499 aa27.91■■■□□ 2.06
CSPG5-201ENST00000264723 SMARCA4P51532 1647 aa27.9■■■□□ 2.06
CSPG5-201ENST00000264723 ATAD2BQ9ULI0 1458 aa27.87■■■□□ 2.05
CSPG5-201ENST00000264723 SMARCA2P51531 1590 aa27.83■■■□□ 2.05
CSPG5-201ENST00000264723 MTUS2Q5JR59 1369 aa27.82■■■□□ 2.04
CSPG5-201ENST00000264723 CUX2O14529 1486 aa27.8■■■□□ 2.04
CSPG5-201ENST00000264723 CDK11AQ9UQ88 783 aaPredicted RBP27.74■■■□□ 2.03
CSPG5-201ENST00000264723 CHMP7Q8WUX9 453 aaPredicted RBP27.72■■■□□ 2.03
CSPG5-201ENST00000264723 RRP7BPQ9NSQ0 103 aa27.72■■■□□ 2.03
CSPG5-201ENST00000264723 CARMIL1Q5VZK9 1371 aa27.72■■■□□ 2.03
CSPG5-201ENST00000264723 KCNH8Q96L42 1107 aa27.71■■■□□ 2.03
CSPG5-201ENST00000264723 TONSLQ96HA7 1378 aa27.71■■■□□ 2.03
CSPG5-201ENST00000264723 IRX6P78412 446 aaPredicted RBP27.7■■■□□ 2.02
CSPG5-201ENST00000264723 CCNB3Q8WWL7 1395 aa27.69■■■□□ 2.02
CSPG5-201ENST00000264723 SUPT16HQ9Y5B9 1047 aaKnown RBP27.67■■■□□ 2.02
CSPG5-201ENST00000264723 HNRNPUQ00839 825 aaKnown RBP eCLIP27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms