Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 AC004817.3-201ENST00000602957 2129 ntBASIC19.55■□□□□ 0.72
ATL3Q6DD88 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 AC079776.2-201ENST00000641154 1609 ntBASIC19.54■□□□□ 0.72
ATL3Q6DD88 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATL3Q6DD88 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATL3Q6DD88 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATL3Q6DD88 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATL3Q6DD88 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATL3Q6DD88 LINC00982-205ENST00000420957 435 ntBASIC19.54■□□□□ 0.72
ATL3Q6DD88 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 LINC00265-3P-201ENST00000447588 903 ntBASIC19.54■□□□□ 0.72
ATL3Q6DD88 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ATL3Q6DD88 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ATL3Q6DD88 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATL3Q6DD88 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATL3Q6DD88 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.54■□□□□ 0.72
ATL3Q6DD88 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.53■□□□□ 0.72
ATL3Q6DD88 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 AC012615.1-201ENST00000565797 1299 ntBASIC19.53■□□□□ 0.72
ATL3Q6DD88 MIR3180-1-201ENST00000580374 94 ntBASIC19.53■□□□□ 0.72
ATL3Q6DD88 MIR3180-3-201ENST00000584616 94 ntBASIC19.53■□□□□ 0.72
ATL3Q6DD88 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 AC010331.1-201ENST00000611423 582 ntBASIC19.53■□□□□ 0.72
ATL3Q6DD88 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 AC018695.7-201ENST00000624587 2492 ntBASIC19.53■□□□□ 0.72
ATL3Q6DD88 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 IER3-202ENST00000376377 1350 ntBASIC19.53■□□□□ 0.72
ATL3Q6DD88 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATL3Q6DD88 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.53■□□□□ 0.72
ATL3Q6DD88 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ATL3Q6DD88 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.52■□□□□ 0.72
ATL3Q6DD88 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
ATL3Q6DD88 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ATL3Q6DD88 KRT8P49-201ENST00000604166 1432 ntBASIC19.52■□□□□ 0.72
ATL3Q6DD88 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ATL3Q6DD88 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATL3Q6DD88 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ATL3Q6DD88 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATL3Q6DD88 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
ATL3Q6DD88 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATL3Q6DD88 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
ATL3Q6DD88 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
ATL3Q6DD88 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATL3Q6DD88 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.52■□□□□ 0.72
ATL3Q6DD88 AC104819.1-201ENST00000504587 486 ntBASIC19.52■□□□□ 0.72
ATL3Q6DD88 AC074051.2-201ENST00000565115 352 ntBASIC19.52■□□□□ 0.72
ATL3Q6DD88 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
ATL3Q6DD88 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.52■□□□□ 0.72
ATL3Q6DD88 AC013467.2-201ENST00000605472 835 ntBASIC19.52■□□□□ 0.72
ATL3Q6DD88 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.52■□□□□ 0.72
ATL3Q6DD88 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms