RNA–Protein interactions for RNA: ENST00000330852.9

RAB28-202, Transcript of RAB28, member RAS oncogene family, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RAB28, Length 1,715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB28-202ENST00000330852 NISCHQ9Y2I1 1504 aa45■■■■■ 4.79
RAB28-202ENST00000330852 CCDC180Q9P1Z9 1646 aa40.35■■■■■ 4.05
RAB28-202ENST00000330852 ABCC9O60706 1549 aa39.93■■■■□ 3.98
RAB28-202ENST00000330852 RB1CC1Q8TDY2 1594 aa38.25■■■■□ 3.71
RAB28-202ENST00000330852 NACADO15069 1562 aa38.07■■■■□ 3.69
RAB28-202ENST00000330852 DCAF8L2P0C7V8 631 aa37.77■■■■□ 3.64
RAB28-202ENST00000330852 MYO15BQ96JP2 1530 aa37.69■■■■□ 3.62
RAB28-202ENST00000330852 UNC13AQ9UPW8 1703 aa37.36■■■■□ 3.57
RAB28-202ENST00000330852 ZCCHC6Q5VYS8 1495 aaKnown RBP37.34■■■■□ 3.57
RAB28-202ENST00000330852 DCAF1Q9Y4B6 1507 aa37.27■■■■□ 3.56
RAB28-202ENST00000330852 DNAJC5BQ9UF47 199 aa37.19■■■■□ 3.54
RAB28-202ENST00000330852 PABPN1Q86U42 306 aaKnown RBP eCLIP37.18■■■■□ 3.54
RAB28-202ENST00000330852 BICRAQ9NZM4 1560 aa37.06■■■■□ 3.52
RAB28-202ENST00000330852 SHROOM4Q9ULL8 1493 aa36.74■■■■□ 3.47
RAB28-202ENST00000330852 SCRIBQ14160 1630 aa36.63■■■■□ 3.45
RAB28-202ENST00000330852 CC2D2AQ9P2K1 1620 aa36.14■■■■□ 3.38
RAB28-202ENST00000330852 EIF4G1Q04637 1599 aaKnown RBP36.14■■■■□ 3.38
RAB28-202ENST00000330852 CECR2Q9BXF3 1484 aa35.99■■■■□ 3.35
RAB28-202ENST00000330852 NCAPD3P42695 1498 aa35.12■■■■□ 3.21
RAB28-202ENST00000330852 SMARCA4P51532 1647 aa35.04■■■■□ 3.2
RAB28-202ENST00000330852 ATAD2BQ9ULI0 1458 aa35■■■■□ 3.19
RAB28-202ENST00000330852 SMARCA2P51531 1590 aa34.99■■■■□ 3.19
RAB28-202ENST00000330852 BAZ1AQ9NRL2 1556 aaPredicted RBP34.94■■■■□ 3.18
RAB28-202ENST00000330852 HMGXB3Q12766 1538 aa34.89■■■■□ 3.18
RAB28-202ENST00000330852 PEG3Q9GZU2 1588 aa34.76■■■■□ 3.15
RAB28-202ENST00000330852 BAZ1BQ9UIG0 1483 aaKnown RBP34.68■■■■□ 3.14
RAB28-202ENST00000330852 MROH2BQ7Z745 1585 aa34.62■■■■□ 3.13
RAB28-202ENST00000330852 ERCC6Q03468 1493 aa34.51■■■■□ 3.11
RAB28-202ENST00000330852 CUX2O14529 1486 aa34.42■■■■□ 3.1
RAB28-202ENST00000330852 NESP48681 1621 aa34.36■■■■□ 3.09
RAB28-202ENST00000330852 LAMC3Q9Y6N6 1575 aa34.3■■■■□ 3.08
RAB28-202ENST00000330852 WIZO95785 1651 aa34.22■■■■□ 3.07
RAB28-202ENST00000330852 PDS5BQ9NTI5 1447 aa34.08■■■■□ 3.05
RAB28-202ENST00000330852 DNAJC5Q9H3Z4 198 aa34.07■■■■□ 3.05
RAB28-202ENST00000330852 CADPSQ9ULU8 1353 aa34.04■■■■□ 3.04
RAB28-202ENST00000330852 THOC2Q8NI27 1593 aaKnown RBP34.03■■■■□ 3.04
RAB28-202ENST00000330852 RSF1Q96T23 1441 aaPredicted RBP34.02■■■■□ 3.04
RAB28-202ENST00000330852 KIF21AQ7Z4S6 1674 aa33.99■■■■□ 3.03
RAB28-202ENST00000330852 TOP2AP11388 1531 aaKnown RBP33.86■■■■□ 3.01
RAB28-202ENST00000330852 MRC2Q9UBG0 1479 aa33.73■■■□□ 2.99
RAB28-202ENST00000330852 CFTRP13569 1480 aa33.71■■■□□ 2.99
RAB28-202ENST00000330852 CEP164Q9UPV0 1460 aa33.66■■■□□ 2.98
RAB28-202ENST00000330852 WDR62O43379 1518 aa33.65■■■□□ 2.98
RAB28-202ENST00000330852 FANCD2Q9BXW9 1451 aa33.63■■■□□ 2.97
RAB28-202ENST00000330852 PRDM2Q13029 1718 aa33.47■■■□□ 2.95
RAB28-202ENST00000330852 CCDC88BA6NC98 1476 aa33.44■■■□□ 2.94
RAB28-202ENST00000330852 URB2Q14146 1524 aaKnown RBP33.31■■■□□ 2.92
RAB28-202ENST00000330852 ABCC8Q09428 1581 aa33.08■■■□□ 2.89
RAB28-202ENST00000330852 TOPBP1Q92547 1522 aa33.02■■■□□ 2.88
RAB28-202ENST00000330852 IFT140Q96RY7 1462 aa32.99■■■□□ 2.87
RAB28-202ENST00000330852 DNMBPQ6XZF7 1577 aa32.95■■■□□ 2.87
RAB28-202ENST00000330852 OSCARQ8IYS5 282 aa32.88■■■□□ 2.85
RAB28-202ENST00000330852 ZNF608Q9ULD9 1512 aaPredicted RBP32.82■■■□□ 2.84
RAB28-202ENST00000330852 TARBP1Q13395 1621 aaKnown RBP32.72■■■□□ 2.83
RAB28-202ENST00000330852 EIF4G3O43432 1585 aaKnown RBP32.7■■■□□ 2.83
RAB28-202ENST00000330852 POLA1P09884 1462 aaPredicted RBP32.69■■■□□ 2.82
RAB28-202ENST00000330852 SUPT5HO00267 1087 aaKnown RBP32.63■■■□□ 2.81
RAB28-202ENST00000330852 TRIM41Q8WV44 630 aa32.58■■■□□ 2.81
RAB28-202ENST00000330852 AQRO60306 1485 aaKnown RBP eCLIP32.57■■■□□ 2.8
RAB28-202ENST00000330852 SOGA1O94964 1423 aa32.56■■■□□ 2.8
RAB28-202ENST00000330852 CUX1P39880 1505 aa32.52■■■□□ 2.8
RAB28-202ENST00000330852 WDR97A6NE52 1622 aa32.52■■■□□ 2.8
RAB28-202ENST00000330852 FGD5Q6ZNL6 1462 aa32.51■■■□□ 2.8
RAB28-202ENST00000330852 RAD54L2Q9Y4B4 1467 aa32.51■■■□□ 2.8
RAB28-202ENST00000330852 CHD1O14646 1710 aa32.43■■■□□ 2.78
RAB28-202ENST00000330852 TDRD9Q8NDG6 1382 aaKnown RBP32.41■■■□□ 2.78
RAB28-202ENST00000330852 RIMBP3CA6NJZ7 1639 aa32.37■■■□□ 2.77
RAB28-202ENST00000330852 RIMBP3BA6NNM3 1639 aa32.37■■■□□ 2.77
RAB28-202ENST00000330852 RIMBP3Q9UFD9 1639 aa32.37■■■□□ 2.77
RAB28-202ENST00000330852 ARHGEF11O15085 1522 aa32.3■■■□□ 2.76
RAB28-202ENST00000330852 FBLN2P98095 1184 aa32.3■■■□□ 2.76
RAB28-202ENST00000330852 GRIN2BQ13224 1484 aa32.28■■■□□ 2.76
RAB28-202ENST00000330852 MAGI1Q96QZ7 1491 aaPredicted RBP32.27■■■□□ 2.76
RAB28-202ENST00000330852 SNAPC4Q5SXM2 1469 aa32.26■■■□□ 2.75
RAB28-202ENST00000330852 ABCA10Q8WWZ4 1543 aa32.21■■■□□ 2.75
RAB28-202ENST00000330852 GAPVD1Q14C86 1478 aa32.18■■■□□ 2.74
RAB28-202ENST00000330852 CHMP7Q8WUX9 453 aaPredicted RBP32.17■■■□□ 2.74
RAB28-202ENST00000330852 PBRM1Q86U86 1689 aa32.16■■■□□ 2.74
RAB28-202ENST00000330852 SYNJ2O15056 1496 aa32.14■■■□□ 2.74
RAB28-202ENST00000330852 BIVM-ERCC5R4GMW8 1640 aa32.13■■■□□ 2.73
RAB28-202ENST00000330852 WRNQ14191 1432 aaPredicted RBP eCLIP32.13■■■□□ 2.73
RAB28-202ENST00000330852 TOP2BQ02880 1626 aa32.12■■■□□ 2.73
RAB28-202ENST00000330852 ABCA5Q8WWZ7 1642 aa32.12■■■□□ 2.73
RAB28-202ENST00000330852 SYNJ1O43426 1573 aa32.11■■■□□ 2.73
RAB28-202ENST00000330852 CLASP1Q7Z460 1538 aa32.07■■■□□ 2.72
RAB28-202ENST00000330852 CYB5RLQ6IPT4 315 aa32.03■■■□□ 2.72
RAB28-202ENST00000330852 ARAP1Q96P48 1450 aa31.98■■■□□ 2.71
RAB28-202ENST00000330852 ADAMTS12P58397 1594 aa31.84■■■□□ 2.69
RAB28-202ENST00000330852 GRIN2AQ12879 1464 aa31.84■■■□□ 2.69
RAB28-202ENST00000330852 ERICH3Q5RHP9 1530 aa31.83■■■□□ 2.69
RAB28-202ENST00000330852 FHAD1B1AJZ9 1412 aa31.8■■■□□ 2.68
RAB28-202ENST00000330852 NUP160Q12769 1436 aa31.74■■■□□ 2.67
RAB28-202ENST00000330852 CEP170Q5SW79 1584 aa31.68■■■□□ 2.66
RAB28-202ENST00000330852 SHROOM2Q13796 1616 aa31.58■■■□□ 2.65
RAB28-202ENST00000330852 TRHP20396 242 aaPredicted RBP31.58■■■□□ 2.65
RAB28-202ENST00000330852 KIF27Q86VH2 1401 aa31.51■■■□□ 2.64
RAB28-202ENST00000330852 ERCC6L2Q5T890 1561 aa31.5■■■□□ 2.63
RAB28-202ENST00000330852 IGF1RP08069 1367 aa31.44■■■□□ 2.62
RAB28-202ENST00000330852 CUL7Q14999 1698 aa31.43■■■□□ 2.62
RAB28-202ENST00000330852 JPH4Q96JJ6 628 aa31.41■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms