Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COMMD3-BMI1R4GMX3 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
COMMD3-BMI1R4GMX3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.54■■□□□ 1.2
COMMD3-BMI1R4GMX3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.54■■□□□ 1.2
COMMD3-BMI1R4GMX3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC22.54■■□□□ 1.2
COMMD3-BMI1R4GMX3 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC22.54■■□□□ 1.2
COMMD3-BMI1R4GMX3 EI24-212ENST00000615917 1407 ntTSL 2 BASIC22.54■■□□□ 1.2
COMMD3-BMI1R4GMX3 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COMMD3-BMI1R4GMX3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
COMMD3-BMI1R4GMX3 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.54■■□□□ 1.2
COMMD3-BMI1R4GMX3 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
COMMD3-BMI1R4GMX3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COMMD3-BMI1R4GMX3 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COMMD3-BMI1R4GMX3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COMMD3-BMI1R4GMX3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.53■■□□□ 1.2
COMMD3-BMI1R4GMX3 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COMMD3-BMI1R4GMX3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COMMD3-BMI1R4GMX3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COMMD3-BMI1R4GMX3 MIR3665-201ENST00000578708 105 ntBASIC22.52■■□□□ 1.2
COMMD3-BMI1R4GMX3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
COMMD3-BMI1R4GMX3 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.52■■□□□ 1.2
COMMD3-BMI1R4GMX3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.19
COMMD3-BMI1R4GMX3 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COMMD3-BMI1R4GMX3 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.51■■□□□ 1.19
COMMD3-BMI1R4GMX3 WHAMMP2-203ENST00000563942 1603 ntBASIC22.51■■□□□ 1.19
COMMD3-BMI1R4GMX3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
COMMD3-BMI1R4GMX3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.51■■□□□ 1.19
COMMD3-BMI1R4GMX3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.5■■□□□ 1.19
COMMD3-BMI1R4GMX3 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
COMMD3-BMI1R4GMX3 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
COMMD3-BMI1R4GMX3 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
COMMD3-BMI1R4GMX3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COMMD3-BMI1R4GMX3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
COMMD3-BMI1R4GMX3 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COMMD3-BMI1R4GMX3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COMMD3-BMI1R4GMX3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COMMD3-BMI1R4GMX3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COMMD3-BMI1R4GMX3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC22.48■■□□□ 1.19
COMMD3-BMI1R4GMX3 AP006261.1-201ENST00000584783 668 ntBASIC22.48■■□□□ 1.19
COMMD3-BMI1R4GMX3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COMMD3-BMI1R4GMX3 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.48■■□□□ 1.19
COMMD3-BMI1R4GMX3 LINC00273-201ENST00000539813 1452 ntBASIC22.47■■□□□ 1.19
COMMD3-BMI1R4GMX3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
COMMD3-BMI1R4GMX3 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COMMD3-BMI1R4GMX3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
COMMD3-BMI1R4GMX3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COMMD3-BMI1R4GMX3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
COMMD3-BMI1R4GMX3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
COMMD3-BMI1R4GMX3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COMMD3-BMI1R4GMX3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
COMMD3-BMI1R4GMX3 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COMMD3-BMI1R4GMX3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
COMMD3-BMI1R4GMX3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC22.46■■□□□ 1.19
COMMD3-BMI1R4GMX3 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC22.46■■□□□ 1.19
COMMD3-BMI1R4GMX3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COMMD3-BMI1R4GMX3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
COMMD3-BMI1R4GMX3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COMMD3-BMI1R4GMX3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.19
COMMD3-BMI1R4GMX3 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COMMD3-BMI1R4GMX3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COMMD3-BMI1R4GMX3 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COMMD3-BMI1R4GMX3 AL024507.2-201ENST00000606070 2574 ntBASIC22.45■■□□□ 1.18
COMMD3-BMI1R4GMX3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COMMD3-BMI1R4GMX3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
COMMD3-BMI1R4GMX3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COMMD3-BMI1R4GMX3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COMMD3-BMI1R4GMX3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
COMMD3-BMI1R4GMX3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COMMD3-BMI1R4GMX3 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22.44■■□□□ 1.18
COMMD3-BMI1R4GMX3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
COMMD3-BMI1R4GMX3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COMMD3-BMI1R4GMX3 AC138932.3-201ENST00000567634 1902 ntBASIC22.44■■□□□ 1.18
COMMD3-BMI1R4GMX3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC22.44■■□□□ 1.18
COMMD3-BMI1R4GMX3 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
COMMD3-BMI1R4GMX3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.43■■□□□ 1.18
COMMD3-BMI1R4GMX3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.43■■□□□ 1.18
COMMD3-BMI1R4GMX3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COMMD3-BMI1R4GMX3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.43■■□□□ 1.18
COMMD3-BMI1R4GMX3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COMMD3-BMI1R4GMX3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COMMD3-BMI1R4GMX3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COMMD3-BMI1R4GMX3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COMMD3-BMI1R4GMX3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COMMD3-BMI1R4GMX3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COMMD3-BMI1R4GMX3 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
COMMD3-BMI1R4GMX3 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
COMMD3-BMI1R4GMX3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
COMMD3-BMI1R4GMX3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.41■■□□□ 1.18
COMMD3-BMI1R4GMX3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC22.41■■□□□ 1.18
COMMD3-BMI1R4GMX3 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COMMD3-BMI1R4GMX3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COMMD3-BMI1R4GMX3 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COMMD3-BMI1R4GMX3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
COMMD3-BMI1R4GMX3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COMMD3-BMI1R4GMX3 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COMMD3-BMI1R4GMX3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.4■■□□□ 1.18
COMMD3-BMI1R4GMX3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC22.4■■□□□ 1.18
COMMD3-BMI1R4GMX3 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.4■■□□□ 1.18
COMMD3-BMI1R4GMX3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.4■■□□□ 1.18
COMMD3-BMI1R4GMX3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms