Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
CDT1Q9H211 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
CDT1Q9H211 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
CDT1Q9H211 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
CDT1Q9H211 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CDT1Q9H211 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.43■■□□□ 1.82
CDT1Q9H211 MIR6765-201ENST00000614092 87 ntBASIC26.43■■□□□ 1.82
CDT1Q9H211 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CDT1Q9H211 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CDT1Q9H211 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.42■■□□□ 1.82
CDT1Q9H211 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CDT1Q9H211 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CDT1Q9H211 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CDT1Q9H211 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
CDT1Q9H211 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CDT1Q9H211 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.82
CDT1Q9H211 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CDT1Q9H211 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC26.41■■□□□ 1.82
CDT1Q9H211 AC018755.3-202ENST00000596210 929 ntBASIC26.41■■□□□ 1.82
CDT1Q9H211 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CDT1Q9H211 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.41■■□□□ 1.82
CDT1Q9H211 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CDT1Q9H211 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CDT1Q9H211 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
CDT1Q9H211 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
CDT1Q9H211 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC26.39■■□□□ 1.81
CDT1Q9H211 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.39■■□□□ 1.81
CDT1Q9H211 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDT1Q9H211 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
CDT1Q9H211 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.38■■□□□ 1.81
CDT1Q9H211 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDT1Q9H211 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDT1Q9H211 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDT1Q9H211 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CDT1Q9H211 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CDT1Q9H211 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.37■■□□□ 1.81
CDT1Q9H211 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
CDT1Q9H211 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC26.37■■□□□ 1.81
CDT1Q9H211 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
CDT1Q9H211 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CDT1Q9H211 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CDT1Q9H211 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CDT1Q9H211 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
CDT1Q9H211 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.36■■□□□ 1.81
CDT1Q9H211 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.35■■□□□ 1.81
CDT1Q9H211 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC26.35■■□□□ 1.81
CDT1Q9H211 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC26.35■■□□□ 1.81
CDT1Q9H211 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.35■■□□□ 1.81
CDT1Q9H211 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
CDT1Q9H211 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
CDT1Q9H211 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CDT1Q9H211 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
CDT1Q9H211 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
CDT1Q9H211 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.34■■□□□ 1.81
CDT1Q9H211 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDT1Q9H211 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.34■■□□□ 1.81
CDT1Q9H211 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDT1Q9H211 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
CDT1Q9H211 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC26.33■■□□□ 1.81
CDT1Q9H211 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CDT1Q9H211 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CDT1Q9H211 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CDT1Q9H211 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CDT1Q9H211 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.32■■□□□ 1.8
CDT1Q9H211 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.32■■□□□ 1.8
CDT1Q9H211 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC26.32■■□□□ 1.8
CDT1Q9H211 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CDT1Q9H211 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CDT1Q9H211 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.31■■□□□ 1.8
CDT1Q9H211 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CDT1Q9H211 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.31■■□□□ 1.8
CDT1Q9H211 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC26.31■■□□□ 1.8
CDT1Q9H211 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CDT1Q9H211 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
CDT1Q9H211 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CDT1Q9H211 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
CDT1Q9H211 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CDT1Q9H211 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.29■■□□□ 1.8
CDT1Q9H211 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CDT1Q9H211 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CDT1Q9H211 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CDT1Q9H211 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CDT1Q9H211 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.29■■□□□ 1.8
CDT1Q9H211 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CDT1Q9H211 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CDT1Q9H211 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CDT1Q9H211 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.28■■□□□ 1.8
CDT1Q9H211 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CDT1Q9H211 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CDT1Q9H211 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CDT1Q9H211 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC26.26■■□□□ 1.79
CDT1Q9H211 AC139795.1-202ENST00000500444 432 ntBASIC26.26■■□□□ 1.79
CDT1Q9H211 BHLHE23-202ENST00000612929 1109 ntBASIC26.26■■□□□ 1.79
CDT1Q9H211 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CDT1Q9H211 AC010980.1-201ENST00000587192 1142 ntBASIC26.25■■□□□ 1.79
CDT1Q9H211 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CDT1Q9H211 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CDT1Q9H211 RPS2P7-201ENST00000447334 885 ntBASIC26.24■■□□□ 1.79
CDT1Q9H211 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC26.24■■□□□ 1.79
CDT1Q9H211 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms