Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC37.53■■■■□ 3.6
CDT1Q9H211 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
CDT1Q9H211 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC36.4■■■■□ 3.42
CDT1Q9H211 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC36.37■■■■□ 3.41
CDT1Q9H211 AL356512.1-201ENST00000607453 1739 ntBASIC36.35■■■■□ 3.41
CDT1Q9H211 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.4
CDT1Q9H211 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC36.28■■■■□ 3.4
CDT1Q9H211 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC35.61■■■■□ 3.29
CDT1Q9H211 HES6-203ENST00000409160 1600 ntTSL 2 BASIC35.6■■■■□ 3.29
CDT1Q9H211 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC35.4■■■■□ 3.26
CDT1Q9H211 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC35.32■■■■□ 3.25
CDT1Q9H211 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC35.06■■■■□ 3.2
CDT1Q9H211 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC35.03■■■■□ 3.2
CDT1Q9H211 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC34.92■■■■□ 3.18
CDT1Q9H211 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC34.86■■■■□ 3.17
CDT1Q9H211 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
CDT1Q9H211 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.8■■■■□ 3.16
CDT1Q9H211 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC34.75■■■■□ 3.15
CDT1Q9H211 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC34.65■■■■□ 3.14
CDT1Q9H211 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC34.6■■■■□ 3.13
CDT1Q9H211 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC34.42■■■■□ 3.1
CDT1Q9H211 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC34■■■■□ 3.03
CDT1Q9H211 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.96■■■■□ 3.03
CDT1Q9H211 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.95■■■■□ 3.03
CDT1Q9H211 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
CDT1Q9H211 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
CDT1Q9H211 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC33.8■■■■□ 3
CDT1Q9H211 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
CDT1Q9H211 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
CDT1Q9H211 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC33.71■■■□□ 2.99
CDT1Q9H211 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
CDT1Q9H211 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC33.59■■■□□ 2.97
CDT1Q9H211 INO80B-203ENST00000409917 796 ntTSL 2 BASIC33.51■■■□□ 2.95
CDT1Q9H211 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC33.51■■■□□ 2.95
CDT1Q9H211 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC33.5■■■□□ 2.95
CDT1Q9H211 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC33.44■■■□□ 2.94
CDT1Q9H211 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
CDT1Q9H211 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC33.35■■■□□ 2.93
CDT1Q9H211 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC33.18■■■□□ 2.9
CDT1Q9H211 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC33.18■■■□□ 2.9
CDT1Q9H211 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
CDT1Q9H211 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
CDT1Q9H211 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC33.15■■■□□ 2.9
CDT1Q9H211 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CDT1Q9H211 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC33.13■■■□□ 2.89
CDT1Q9H211 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC33.11■■■□□ 2.89
CDT1Q9H211 AC015813.7-201ENST00000623294 581 ntBASIC33.09■■■□□ 2.89
CDT1Q9H211 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC33.04■■■□□ 2.88
CDT1Q9H211 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
CDT1Q9H211 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC32.86■■■□□ 2.85
CDT1Q9H211 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC32.83■■■□□ 2.85
CDT1Q9H211 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC32.78■■■□□ 2.84
CDT1Q9H211 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
CDT1Q9H211 AC006077.2-201ENST00000623591 457 ntBASIC32.71■■■□□ 2.83
CDT1Q9H211 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC32.71■■■□□ 2.83
CDT1Q9H211 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
CDT1Q9H211 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC32.69■■■□□ 2.82
CDT1Q9H211 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
CDT1Q9H211 ZNRF2P1-201ENST00000441407 443 ntBASIC32.61■■■□□ 2.81
CDT1Q9H211 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CDT1Q9H211 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
CDT1Q9H211 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC32.52■■■□□ 2.8
CDT1Q9H211 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
CDT1Q9H211 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
CDT1Q9H211 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
CDT1Q9H211 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC32.34■■■□□ 2.77
CDT1Q9H211 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CDT1Q9H211 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.26■■■□□ 2.75
CDT1Q9H211 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CDT1Q9H211 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC32.15■■■□□ 2.74
CDT1Q9H211 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CDT1Q9H211 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
CDT1Q9H211 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
CDT1Q9H211 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC32.05■■■□□ 2.72
CDT1Q9H211 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC32.05■■■□□ 2.72
CDT1Q9H211 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
CDT1Q9H211 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
CDT1Q9H211 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CDT1Q9H211 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
CDT1Q9H211 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
CDT1Q9H211 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CDT1Q9H211 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.91■■■□□ 2.7
CDT1Q9H211 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.89■■■□□ 2.7
CDT1Q9H211 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CDT1Q9H211 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CDT1Q9H211 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
CDT1Q9H211 AP002365.1-201ENST00000603448 772 ntBASIC31.83■■■□□ 2.69
CDT1Q9H211 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CDT1Q9H211 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.82■■■□□ 2.68
CDT1Q9H211 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.68
CDT1Q9H211 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.73■■■□□ 2.67
CDT1Q9H211 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CDT1Q9H211 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.72■■■□□ 2.67
CDT1Q9H211 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.68■■■□□ 2.66
CDT1Q9H211 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.67■■■□□ 2.66
CDT1Q9H211 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
CDT1Q9H211 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CDT1Q9H211 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
CDT1Q9H211 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
CDT1Q9H211 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms