Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
COL3A1P02461 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
COL3A1P02461 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC32.47■■■□□ 2.79
COL3A1P02461 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC32.47■■■□□ 2.79
COL3A1P02461 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC32.47■■■□□ 2.79
COL3A1P02461 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL3A1P02461 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL3A1P02461 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
COL3A1P02461 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC32.46■■■□□ 2.79
COL3A1P02461 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
COL3A1P02461 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC32.46■■■□□ 2.79
COL3A1P02461 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
COL3A1P02461 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC32.45■■■□□ 2.79
COL3A1P02461 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC32.45■■■□□ 2.79
COL3A1P02461 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC32.45■■■□□ 2.78
COL3A1P02461 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC32.44■■■□□ 2.78
COL3A1P02461 MIR6765-201ENST00000614092 87 ntBASIC32.44■■■□□ 2.78
COL3A1P02461 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
COL3A1P02461 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
COL3A1P02461 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC32.44■■■□□ 2.78
COL3A1P02461 DUX4L18-201ENST00000553347 1267 ntBASIC32.43■■■□□ 2.78
COL3A1P02461 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC32.43■■■□□ 2.78
COL3A1P02461 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC32.43■■■□□ 2.78
COL3A1P02461 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL3A1P02461 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL3A1P02461 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL3A1P02461 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
COL3A1P02461 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL3A1P02461 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC32.42■■■□□ 2.78
COL3A1P02461 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC32.41■■■□□ 2.78
COL3A1P02461 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
COL3A1P02461 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC32.41■■■□□ 2.78
COL3A1P02461 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC32.41■■■□□ 2.78
COL3A1P02461 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC32.41■■■□□ 2.78
COL3A1P02461 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC32.4■■■□□ 2.78
COL3A1P02461 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC32.4■■■□□ 2.78
COL3A1P02461 IDNK-203ENST00000405990 629 ntTSL 2 BASIC32.4■■■□□ 2.78
COL3A1P02461 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
COL3A1P02461 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
COL3A1P02461 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC32.39■■■□□ 2.78
COL3A1P02461 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
COL3A1P02461 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
COL3A1P02461 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC32.38■■■□□ 2.77
COL3A1P02461 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC32.38■■■□□ 2.77
COL3A1P02461 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC32.38■■■□□ 2.77
COL3A1P02461 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC32.37■■■□□ 2.77
COL3A1P02461 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC32.37■■■□□ 2.77
COL3A1P02461 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC32.37■■■□□ 2.77
COL3A1P02461 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC32.37■■■□□ 2.77
COL3A1P02461 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC32.37■■■□□ 2.77
COL3A1P02461 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC32.37■■■□□ 2.77
COL3A1P02461 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL3A1P02461 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC32.37■■■□□ 2.77
COL3A1P02461 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
COL3A1P02461 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC32.35■■■□□ 2.77
COL3A1P02461 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC32.35■■■□□ 2.77
COL3A1P02461 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC32.35■■■□□ 2.77
COL3A1P02461 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC32.35■■■□□ 2.77
COL3A1P02461 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL3A1P02461 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
COL3A1P02461 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL3A1P02461 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL3A1P02461 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
COL3A1P02461 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC32.32■■■□□ 2.77
COL3A1P02461 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC32.32■■■□□ 2.76
COL3A1P02461 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC32.32■■■□□ 2.76
COL3A1P02461 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
COL3A1P02461 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL3A1P02461 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL3A1P02461 BEX3-202ENST00000372634 753 ntTSL 2 BASIC32.31■■■□□ 2.76
COL3A1P02461 PVT1_1.1-201ENST00000615125 194 ntBASIC32.31■■■□□ 2.76
COL3A1P02461 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC32.31■■■□□ 2.76
COL3A1P02461 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC32.31■■■□□ 2.76
COL3A1P02461 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL3A1P02461 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL3A1P02461 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL3A1P02461 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC32.3■■■□□ 2.76
COL3A1P02461 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
COL3A1P02461 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
COL3A1P02461 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC32.29■■■□□ 2.76
COL3A1P02461 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL3A1P02461 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
COL3A1P02461 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL3A1P02461 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
COL3A1P02461 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC32.29■■■□□ 2.76
COL3A1P02461 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL3A1P02461 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
COL3A1P02461 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL3A1P02461 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL3A1P02461 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC32.27■■■□□ 2.76
COL3A1P02461 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC32.27■■■□□ 2.76
COL3A1P02461 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL3A1P02461 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
COL3A1P02461 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC32.26■■■□□ 2.75
COL3A1P02461 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC32.26■■■□□ 2.75
COL3A1P02461 AC087393.1-201ENST00000582896 145 ntBASIC32.26■■■□□ 2.75
COL3A1P02461 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL3A1P02461 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC32.25■■■□□ 2.75
COL3A1P02461 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC32.24■■■□□ 2.75
COL3A1P02461 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms