Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 AC092117.1-201ENST00000621230 3250 ntBASIC10.03□□□□□ -0.8
RPS28P62857 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC10.03□□□□□ -0.8
RPS28P62857 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC10.03□□□□□ -0.8
RPS28P62857 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
RPS28P62857 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC10.03□□□□□ -0.8
RPS28P62857 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC10.03□□□□□ -0.8
RPS28P62857 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC10.03□□□□□ -0.8
RPS28P62857 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC10.03□□□□□ -0.8
RPS28P62857 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.8
RPS28P62857 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 AL138709.1-201ENST00000614840 1693 ntBASIC10.02□□□□□ -0.8
RPS28P62857 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.8
RPS28P62857 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC10.02□□□□□ -0.8
RPS28P62857 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.8
RPS28P62857 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC10.02□□□□□ -0.8
RPS28P62857 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC10.02□□□□□ -0.8
RPS28P62857 BX324167.2-201ENST00000623717 3316 ntBASIC10.02□□□□□ -0.8
RPS28P62857 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC10.02□□□□□ -0.8
RPS28P62857 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.8
RPS28P62857 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
RPS28P62857 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC10.02□□□□□ -0.8
RPS28P62857 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC10.02□□□□□ -0.81
RPS28P62857 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.81
RPS28P62857 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 DENR-202ENST00000455982 1052 ntTSL 5 BASIC10.02□□□□□ -0.81
RPS28P62857 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC10.02□□□□□ -0.81
RPS28P62857 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 ABR-228ENST00000574437 3196 ntTSL 5 BASIC10.02□□□□□ -0.81
RPS28P62857 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.81
RPS28P62857 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC10.02□□□□□ -0.81
RPS28P62857 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.81
RPS28P62857 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
RPS28P62857 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC10.02□□□□□ -0.81
RPS28P62857 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC10.02□□□□□ -0.81
RPS28P62857 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
RPS28P62857 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC10.01□□□□□ -0.81
RPS28P62857 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC10.01□□□□□ -0.81
RPS28P62857 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC10.01□□□□□ -0.81
RPS28P62857 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
RPS28P62857 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
RPS28P62857 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 TP53TG5-201ENST00000372726 2374 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
RPS28P62857 KRT16P6-202ENST00000425692 1426 ntBASIC10.01□□□□□ -0.81
RPS28P62857 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC10.01□□□□□ -0.81
RPS28P62857 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
RPS28P62857 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC10.01□□□□□ -0.81
RPS28P62857 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms