RNA–Protein interactions for RNA: ENST00000479339.5

CNKSR3-204, Transcript of CNKSR family member 3, humanhuman

TSL 1 (best) BASIC

Gene CNKSR3, Length 2,023 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3-204ENST00000479339 NISCHQ9Y2I1 1504 aa28.88■■■□□ 2.21
CNKSR3-204ENST00000479339 CCDC180Q9P1Z9 1646 aa25.79■■□□□ 1.72
CNKSR3-204ENST00000479339 ABCC9O60706 1549 aa25.46■■□□□ 1.67
CNKSR3-204ENST00000479339 RB1CC1Q8TDY2 1594 aa24.4■■□□□ 1.5
CNKSR3-204ENST00000479339 NACADO15069 1562 aa24.33■■□□□ 1.49
CNKSR3-204ENST00000479339 DCAF8L2P0C7V8 631 aa24.17■■□□□ 1.46
CNKSR3-204ENST00000479339 MYO15BQ96JP2 1530 aa24.13■■□□□ 1.45
CNKSR3-204ENST00000479339 ZCCHC6Q5VYS8 1495 aaKnown RBP24.01■■□□□ 1.43
CNKSR3-204ENST00000479339 DCAF1Q9Y4B6 1507 aa23.92■■□□□ 1.42
CNKSR3-204ENST00000479339 UNC13AQ9UPW8 1703 aa23.79■■□□□ 1.4
CNKSR3-204ENST00000479339 PABPN1Q86U42 306 aaKnown RBP eCLIP23.75■■□□□ 1.39
CNKSR3-204ENST00000479339 BICRAQ9NZM4 1560 aa23.68■■□□□ 1.38
CNKSR3-204ENST00000479339 DNAJC5BQ9UF47 199 aa23.64■■□□□ 1.37
CNKSR3-204ENST00000479339 SCRIBQ14160 1630 aa23.47■■□□□ 1.35
CNKSR3-204ENST00000479339 SHROOM4Q9ULL8 1493 aa23.45■■□□□ 1.34
CNKSR3-204ENST00000479339 EIF4G1Q04637 1599 aaKnown RBP23.06■■□□□ 1.28
CNKSR3-204ENST00000479339 CC2D2AQ9P2K1 1620 aa23.02■■□□□ 1.28
CNKSR3-204ENST00000479339 CECR2Q9BXF3 1484 aa22.93■■□□□ 1.26
CNKSR3-204ENST00000479339 NCAPD3P42695 1498 aa22.47■■□□□ 1.19
CNKSR3-204ENST00000479339 SMARCA4P51532 1647 aa22.45■■□□□ 1.18
CNKSR3-204ENST00000479339 ATAD2BQ9ULI0 1458 aa22.42■■□□□ 1.18
CNKSR3-204ENST00000479339 BAZ1AQ9NRL2 1556 aaPredicted RBP22.4■■□□□ 1.18
CNKSR3-204ENST00000479339 SMARCA2P51531 1590 aa22.38■■□□□ 1.17
CNKSR3-204ENST00000479339 HMGXB3Q12766 1538 aa22.31■■□□□ 1.16
CNKSR3-204ENST00000479339 PEG3Q9GZU2 1588 aa22.27■■□□□ 1.16
CNKSR3-204ENST00000479339 PELP1Q8IZL8 1130 aaKnown RBP22.26■■□□□ 1.15
CNKSR3-204ENST00000479339 MROH2BQ7Z745 1585 aa22.24■■□□□ 1.15
CNKSR3-204ENST00000479339 BAZ1BQ9UIG0 1483 aaKnown RBP22.2■■□□□ 1.14
CNKSR3-204ENST00000479339 HRCP23327 699 aa22.11■■□□□ 1.13
CNKSR3-204ENST00000479339 ERCC6Q03468 1493 aa21.97■■□□□ 1.11
CNKSR3-204ENST00000479339 WIZO95785 1651 aa21.96■■□□□ 1.11
CNKSR3-204ENST00000479339 NESP48681 1621 aa21.96■■□□□ 1.11
CNKSR3-204ENST00000479339 RSF1Q96T23 1441 aaPredicted RBP21.91■■□□□ 1.1
CNKSR3-204ENST00000479339 LAMC3Q9Y6N6 1575 aa21.89■■□□□ 1.09
CNKSR3-204ENST00000479339 CUX2O14529 1486 aa21.88■■□□□ 1.09
CNKSR3-204ENST00000479339 CADPSQ9ULU8 1353 aa21.78■■□□□ 1.08
CNKSR3-204ENST00000479339 PDS5BQ9NTI5 1447 aa21.76■■□□□ 1.07
CNKSR3-204ENST00000479339 TOP2AP11388 1531 aaKnown RBP21.75■■□□□ 1.07
CNKSR3-204ENST00000479339 THOC2Q8NI27 1593 aaKnown RBP21.7■■□□□ 1.06
CNKSR3-204ENST00000479339 KIF21AQ7Z4S6 1674 aa21.67■■□□□ 1.06
CNKSR3-204ENST00000479339 MYT1Q01538 1121 aa21.65■■□□□ 1.06
CNKSR3-204ENST00000479339 CFTRP13569 1480 aa21.6■■□□□ 1.05
CNKSR3-204ENST00000479339 MRC2Q9UBG0 1479 aa21.55■■□□□ 1.04
CNKSR3-204ENST00000479339 DNAJC5Q9H3Z4 198 aa21.52■■□□□ 1.04
CNKSR3-204ENST00000479339 FANCD2Q9BXW9 1451 aa21.52■■□□□ 1.04
CNKSR3-204ENST00000479339 CEP164Q9UPV0 1460 aa21.51■■□□□ 1.03
CNKSR3-204ENST00000479339 CCDC88BA6NC98 1476 aa21.49■■□□□ 1.03
CNKSR3-204ENST00000479339 WDR62O43379 1518 aa21.49■■□□□ 1.03
CNKSR3-204ENST00000479339 PRDM2Q13029 1718 aa21.35■■□□□ 1.01
CNKSR3-204ENST00000479339 URB2Q14146 1524 aaKnown RBP21.32■■□□□ 1
CNKSR3-204ENST00000479339 PPARGC1BQ86YN6 1023 aaKnown RBP21.26■□□□□ 0.99
CNKSR3-204ENST00000479339 PCGF6Q9BYE7 350 aa21.21■□□□□ 0.99
CNKSR3-204ENST00000479339 ABCC8Q09428 1581 aa21.15■□□□□ 0.98
CNKSR3-204ENST00000479339 TOPBP1Q92547 1522 aa21.15■□□□□ 0.98
CNKSR3-204ENST00000479339 DNMBPQ6XZF7 1577 aa21.1■□□□□ 0.97
CNKSR3-204ENST00000479339 IFT140Q96RY7 1462 aa21.1■□□□□ 0.97
CNKSR3-204ENST00000479339 SUPT5HO00267 1087 aaKnown RBP21.09■□□□□ 0.97
CNKSR3-204ENST00000479339 ZNF608Q9ULD9 1512 aaPredicted RBP20.99■□□□□ 0.95
CNKSR3-204ENST00000479339 SCAF1Q9H7N4 1312 aaKnown RBP20.99■□□□□ 0.95
CNKSR3-204ENST00000479339 POLA1P09884 1462 aaPredicted RBP20.94■□□□□ 0.94
CNKSR3-204ENST00000479339 TARBP1Q13395 1621 aaKnown RBP20.93■□□□□ 0.94
CNKSR3-204ENST00000479339 OSCARQ8IYS5 282 aa20.91■□□□□ 0.94
CNKSR3-204ENST00000479339 CUX1P39880 1505 aa20.89■□□□□ 0.93
CNKSR3-204ENST00000479339 EIF4G3O43432 1585 aaKnown RBP20.89■□□□□ 0.93
CNKSR3-204ENST00000479339 SOGA1O94964 1423 aa20.86■□□□□ 0.93
CNKSR3-204ENST00000479339 ZEB1P37275 1124 aaPredicted RBP20.86■□□□□ 0.93
CNKSR3-204ENST00000479339 FGD5Q6ZNL6 1462 aa20.85■□□□□ 0.93
CNKSR3-204ENST00000479339 RAD54L2Q9Y4B4 1467 aa20.85■□□□□ 0.93
CNKSR3-204ENST00000479339 AQRO60306 1485 aaKnown RBP eCLIP20.84■□□□□ 0.934e-8■■■■■ 31.9
CNKSR3-204ENST00000479339 CHIC1Q5VXU3 224 aa20.81■□□□□ 0.92
CNKSR3-204ENST00000479339 WDR97A6NE52 1622 aa20.78■□□□□ 0.92
CNKSR3-204ENST00000479339 TDRD9Q8NDG6 1382 aaKnown RBP20.76■□□□□ 0.91
CNKSR3-204ENST00000479339 TRIM26Q12899 539 aaPredicted RBP20.7■□□□□ 0.9
CNKSR3-204ENST00000479339 ABCA10Q8WWZ4 1543 aa20.66■□□□□ 0.9
CNKSR3-204ENST00000479339 GRIN2BQ13224 1484 aa20.65■□□□□ 0.9
CNKSR3-204ENST00000479339 CHD1O14646 1710 aa20.65■□□□□ 0.9
CNKSR3-204ENST00000479339 SNAPC4Q5SXM2 1469 aa20.65■□□□□ 0.9
CNKSR3-204ENST00000479339 WRNQ14191 1432 aaPredicted RBP eCLIP20.65■□□□□ 0.9
CNKSR3-204ENST00000479339 TRIM41Q8WV44 630 aa20.63■□□□□ 0.89
CNKSR3-204ENST00000479339 MAGI1Q96QZ7 1491 aaPredicted RBP20.63■□□□□ 0.89
CNKSR3-204ENST00000479339 TOP2BQ02880 1626 aa20.63■□□□□ 0.89
CNKSR3-204ENST00000479339 BIVM-ERCC5R4GMW8 1640 aa20.63■□□□□ 0.89
CNKSR3-204ENST00000479339 GAPVD1Q14C86 1478 aa20.61■□□□□ 0.89
CNKSR3-204ENST00000479339 FBLN2P98095 1184 aa20.61■□□□□ 0.89
CNKSR3-204ENST00000479339 SYNJ1O43426 1573 aa20.6■□□□□ 0.89
CNKSR3-204ENST00000479339 RIMBP3CA6NJZ7 1639 aa20.58■□□□□ 0.89
CNKSR3-204ENST00000479339 RIMBP3BA6NNM3 1639 aa20.58■□□□□ 0.89
CNKSR3-204ENST00000479339 RIMBP3Q9UFD9 1639 aa20.58■□□□□ 0.89
CNKSR3-204ENST00000479339 ABCA5Q8WWZ7 1642 aa20.58■□□□□ 0.88
CNKSR3-204ENST00000479339 ARHGEF11O15085 1522 aa20.56■□□□□ 0.88
CNKSR3-204ENST00000479339 SYNJ2O15056 1496 aa20.55■□□□□ 0.88
CNKSR3-204ENST00000479339 PBRM1Q86U86 1689 aa20.55■□□□□ 0.88
CNKSR3-204ENST00000479339 CHMP7Q8WUX9 453 aaPredicted RBP20.54■□□□□ 0.88
CNKSR3-204ENST00000479339 TTBK1Q5TCY1 1321 aaPredicted RBP20.51■□□□□ 0.87
CNKSR3-204ENST00000479339 ACIN1Q9UKV3 1341 aaKnown RBP20.49■□□□□ 0.87
CNKSR3-204ENST00000479339 CLASP1Q7Z460 1538 aa20.48■□□□□ 0.87
CNKSR3-204ENST00000479339 ERICH3Q5RHP9 1530 aa20.4■□□□□ 0.86
CNKSR3-204ENST00000479339 ADAMTS12P58397 1594 aa20.4■□□□□ 0.86
CNKSR3-204ENST00000479339 ARAP1Q96P48 1450 aa20.39■□□□□ 0.85
CNKSR3-204ENST00000479339 FHAD1B1AJZ9 1412 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms