RNA–Protein interactions for RNA: ENST00000229330.8

HCFC2-201, Transcript of host cell factor C2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HCFC2, Length 5,734 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-201ENST00000229330 NISCHQ9Y2I1 1504 aa23.43■■□□□ 1.34
HCFC2-201ENST00000229330 DCAF8L2P0C7V8 631 aa23.31■■□□□ 1.32
HCFC2-201ENST00000229330 SUPT5HO00267 1087 aaKnown RBP22.42■■□□□ 1.18
HCFC2-201ENST00000229330 PELP1Q8IZL8 1130 aaKnown RBP22.09■■□□□ 1.13
HCFC2-201ENST00000229330 SHROOM4Q9ULL8 1493 aa22.04■■□□□ 1.12
HCFC2-201ENST00000229330 PCGF6Q9BYE7 350 aa21.84■■□□□ 1.09
HCFC2-201ENST00000229330 MYT1Q01538 1121 aa21.79■■□□□ 1.08
HCFC2-201ENST00000229330 CENPBP07199 599 aaPredicted RBP21.55■■□□□ 1.04
HCFC2-201ENST00000229330 ZEB1P37275 1124 aaPredicted RBP21.52■■□□□ 1.04
HCFC2-201ENST00000229330 EHMT2Q96KQ7 1210 aa21.49■■□□□ 1.03
HCFC2-201ENST00000229330 HRCP23327 699 aa21.3■■□□□ 1
HCFC2-201ENST00000229330 ERICH6Q7L0X2 663 aa21.09■□□□□ 0.97
HCFC2-201ENST00000229330 CCER1Q8TC90 406 aaPredicted RBP21.07■□□□□ 0.96
HCFC2-201ENST00000229330 FAM9AQ8IZU1 332 aaPredicted RBP21.07■□□□□ 0.96
HCFC2-201ENST00000229330 APLP2Q06481 763 aa21.01■□□□□ 0.95
HCFC2-201ENST00000229330 TTBK1Q5TCY1 1321 aaPredicted RBP20.93■□□□□ 0.94
HCFC2-201ENST00000229330 YTHDC1Q96MU7 727 aaKnown RBP20.89■□□□□ 0.93
HCFC2-201ENST00000229330 TRIM26Q12899 539 aaPredicted RBP20.87■□□□□ 0.93
HCFC2-201ENST00000229330 PPARGC1BQ86YN6 1023 aaKnown RBP20.78■□□□□ 0.92
HCFC2-201ENST00000229330 TRIM41Q8WV44 630 aa20.72■□□□□ 0.91
HCFC2-201ENST00000229330 NEFLP07196 543 aa20.68■□□□□ 0.9
HCFC2-201ENST00000229330 CHIC1Q5VXU3 224 aa20.43■□□□□ 0.86
HCFC2-201ENST00000229330 LOC105371045A0A1W2PR82 267 aa20.38■□□□□ 0.85
HCFC2-201ENST00000229330 RANGAP1P46060 587 aaPredicted RBP20.34■□□□□ 0.85
HCFC2-201ENST00000229330 DIEXFQ68CQ4 756 aaKnown RBP20.3■□□□□ 0.84
HCFC2-201ENST00000229330 UBTFP17480 764 aaKnown RBP20.29■□□□□ 0.84
HCFC2-201ENST00000229330 GTF3C3Q9Y5Q9 886 aa20.28■□□□□ 0.84
HCFC2-201ENST00000229330 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.11■□□□□ 0.81
HCFC2-201ENST00000229330 ACIN1Q9UKV3 1341 aaKnown RBP20.08■□□□□ 0.81
HCFC2-201ENST00000229330 ATP1B4Q9UN42 357 aaPredicted RBP20.07■□□□□ 0.8
HCFC2-201ENST00000229330 ABCC9O60706 1549 aa20.02■□□□□ 0.8
HCFC2-201ENST00000229330 HNRNPUL2Q1KMD3 747 aaKnown RBP19.93■□□□□ 0.78
HCFC2-201ENST00000229330 DAXXQ9UER7 740 aaPredicted RBP19.91■□□□□ 0.78
HCFC2-201ENST00000229330 RTL5Q5HYW3 569 aaPredicted RBP19.9■□□□□ 0.78
HCFC2-201ENST00000229330 PABPN1Q86U42 306 aaKnown RBP eCLIP19.77■□□□□ 0.76
HCFC2-201ENST00000229330 BCANQ96GW7 911 aa19.76■□□□□ 0.75
HCFC2-201ENST00000229330 SCAF1Q9H7N4 1312 aaKnown RBP19.75■□□□□ 0.75
HCFC2-201ENST00000229330 ZNF316A6NFI3 1004 aaPredicted RBP19.75■□□□□ 0.75
HCFC2-201ENST00000229330 ITGAEP38570 1179 aa19.72■□□□□ 0.75
HCFC2-201ENST00000229330 NEUROD1Q13562 356 aa19.61■□□□□ 0.73
HCFC2-201ENST00000229330 CDK11AQ9UQ88 783 aaPredicted RBP19.61■□□□□ 0.73
HCFC2-201ENST00000229330 CLSPNQ9HAW4 1339 aa19.56■□□□□ 0.72
HCFC2-201ENST00000229330 DCAF1Q9Y4B6 1507 aa19.55■□□□□ 0.72
HCFC2-201ENST00000229330 POLR3GLQ9BT43 218 aa19.51■□□□□ 0.71
HCFC2-201ENST00000229330 ZCCHC6Q5VYS8 1495 aaKnown RBP19.44■□□□□ 0.7
HCFC2-201ENST00000229330 CNGB1Q14028 1251 aaPredicted RBP19.41■□□□□ 0.7
HCFC2-201ENST00000229330 ANP32CO43423 234 aa19.41■□□□□ 0.7
HCFC2-201ENST00000229330 CCDC180Q9P1Z9 1646 aa19.32■□□□□ 0.68
HCFC2-201ENST00000229330 MYT1LQ9UL68 1186 aa19.32■□□□□ 0.68
HCFC2-201ENST00000229330 FKBP8Q14318 412 aa19.3■□□□□ 0.68
HCFC2-201ENST00000229330 SCRIBQ14160 1630 aa19.28■□□□□ 0.68
HCFC2-201ENST00000229330 ANP32AP39687 249 aaKnown RBP19.26■□□□□ 0.67
HCFC2-201ENST00000229330 FAM50AQ14320 339 aaKnown RBP19.18■□□□□ 0.66
HCFC2-201ENST00000229330 EIF5BO60841 1220 aaKnown RBP19.18■□□□□ 0.66
HCFC2-201ENST00000229330 ANP32EQ9BTT0 268 aa19.17■□□□□ 0.66
HCFC2-201ENST00000229330 MIER1Q8N108 512 aa19.11■□□□□ 0.65
HCFC2-201ENST00000229330 MYO15BQ96JP2 1530 aa19.04■□□□□ 0.64
HCFC2-201ENST00000229330 NPM2Q86SE8 214 aaKnown RBP19.03■□□□□ 0.64
HCFC2-201ENST00000229330 CSRNP3Q8WYN3 585 aa19.03■□□□□ 0.64
HCFC2-201ENST00000229330 NBR1Q14596 966 aa19■□□□□ 0.63
HCFC2-201ENST00000229330 TRIM52Q96A61 297 aa19■□□□□ 0.63
HCFC2-201ENST00000229330 GLIPR1L2Q4G1C9 344 aa18.99■□□□□ 0.63
HCFC2-201ENST00000229330 HNRNPUQ00839 825 aaKnown RBP eCLIP18.93■□□□□ 0.62
HCFC2-201ENST00000229330 ZBTB47Q9UFB7 747 aaPredicted RBP18.92■□□□□ 0.62
HCFC2-201ENST00000229330 BCL11AQ9H165 835 aa18.92■□□□□ 0.62
HCFC2-201ENST00000229330 FBLN2P98095 1184 aa18.91■□□□□ 0.62
HCFC2-201ENST00000229330 DDX10Q13206 875 aaKnown RBP18.91■□□□□ 0.62
HCFC2-201ENST00000229330 P3H3Q8IVL6 736 aa18.85■□□□□ 0.61
HCFC2-201ENST00000229330 RB1CC1Q8TDY2 1594 aa18.84■□□□□ 0.61
HCFC2-201ENST00000229330 ZNF326Q5BKZ1 582 aaKnown RBP18.79■□□□□ 0.6
HCFC2-201ENST00000229330 CCDC136Q96JN2 1154 aa18.77■□□□□ 0.6
HCFC2-201ENST00000229330 SLC4A1APQ9BWU0 796 aaKnown RBP18.77■□□□□ 0.6
HCFC2-201ENST00000229330 SUPT16HQ9Y5B9 1047 aaKnown RBP18.75■□□□□ 0.59
HCFC2-201ENST00000229330 FAM9BQ8IZU0 186 aa18.73■□□□□ 0.59
HCFC2-201ENST00000229330 IRX6P78412 446 aaPredicted RBP18.73■□□□□ 0.59
HCFC2-201ENST00000229330 CANXP27824 592 aaKnown RBP18.72■□□□□ 0.59
HCFC2-201ENST00000229330 NACADO15069 1562 aa18.72■□□□□ 0.59
HCFC2-201ENST00000229330 RSF1Q96T23 1441 aaPredicted RBP18.71■□□□□ 0.59
HCFC2-201ENST00000229330 ARID3CA6NKF2 412 aa18.71■□□□□ 0.59
HCFC2-201ENST00000229330 TONSLQ96HA7 1378 aa18.71■□□□□ 0.59
HCFC2-201ENST00000229330 ANP32BQ92688 251 aaKnown RBP18.67■□□□□ 0.58
HCFC2-201ENST00000229330 UPF2Q9HAU5 1272 aaKnown RBP18.58■□□□□ 0.56
HCFC2-201ENST00000229330 MRS2Q9HD23 443 aa18.56■□□□□ 0.56
HCFC2-201ENST00000229330 DDRGK1Q96HY6 314 aa18.52■□□□□ 0.55
HCFC2-201ENST00000229330 ZNF777Q9ULD5 760 aaPredicted RBP18.52■□□□□ 0.55
HCFC2-201ENST00000229330 NOP58Q9Y2X3 529 aaKnown RBP18.51■□□□□ 0.55
HCFC2-201ENST00000229330 ARXQ96QS3 562 aa18.5■□□□□ 0.55
HCFC2-201ENST00000229330 RBM19Q9Y4C8 960 aaKnown RBP18.5■□□□□ 0.55
HCFC2-201ENST00000229330 RTN4Q9NQC3 1192 aaKnown RBP18.5■□□□□ 0.55
HCFC2-201ENST00000229330 DEKP35659 375 aaKnown RBP18.5■□□□□ 0.55
HCFC2-201ENST00000229330 HSP90AA1P07900 732 aaKnown RBP18.48■□□□□ 0.55
HCFC2-201ENST00000229330 HIRIP3Q9BW71 556 aaPredicted RBP18.48■□□□□ 0.55
HCFC2-201ENST00000229330 NEFMP07197 916 aa18.48■□□□□ 0.55
HCFC2-201ENST00000229330 TMC1Q8TDI8 760 aa18.47■□□□□ 0.55
HCFC2-201ENST00000229330 PPM1GO15355 546 aaPredicted RBP18.46■□□□□ 0.55
HCFC2-201ENST00000229330 SALL2Q9Y467 1007 aaPredicted RBP18.46■□□□□ 0.55
HCFC2-201ENST00000229330 PPP4R2Q9NY27 417 aa18.45■□□□□ 0.54
HCFC2-201ENST00000229330 BAZ1BQ9UIG0 1483 aaKnown RBP18.44■□□□□ 0.54
HCFC2-201ENST00000229330 TSHZ2Q9NRE2 1034 aa18.44■□□□□ 0.54
HCFC2-201ENST00000229330 ERICH6BQ5W0A0 696 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms