RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 NISCHQ9Y2I1 1504 aa28.53■■■□□ 2.16
USP48-213ENST00000529637 SHROOM4Q9ULL8 1493 aa24.79■■□□□ 1.56
USP48-213ENST00000529637 SUPT5HO00267 1087 aaKnown RBP24.37■■□□□ 1.49
USP48-213ENST00000529637 DCAF8L2P0C7V8 631 aa24.31■■□□□ 1.48
USP48-213ENST00000529637 ZCCHC6Q5VYS8 1495 aaKnown RBP24.08■■□□□ 1.45
USP48-213ENST00000529637 CCDC180Q9P1Z9 1646 aa24.07■■□□□ 1.44
USP48-213ENST00000529637 HRCP23327 699 aa23.9■■□□□ 1.42
USP48-213ENST00000529637 PPARGC1BQ86YN6 1023 aaKnown RBP23.59■■□□□ 1.37
USP48-213ENST00000529637 PCGF6Q9BYE7 350 aa23.55■■□□□ 1.36
USP48-213ENST00000529637 MYO15BQ96JP2 1530 aa23.54■■□□□ 1.36
USP48-213ENST00000529637 CHIC1Q5VXU3 224 aa23.44■■□□□ 1.34
USP48-213ENST00000529637 DCAF1Q9Y4B6 1507 aa23.22■■□□□ 1.31
USP48-213ENST00000529637 LOC105371045A0A1W2PR82 267 aa22.92■■□□□ 1.26
USP48-213ENST00000529637 SCRIBQ14160 1630 aa22.87■■□□□ 1.25
USP48-213ENST00000529637 ABCC9O60706 1549 aa22.73■■□□□ 1.23
USP48-213ENST00000529637 TRIM26Q12899 539 aaPredicted RBP22.69■■□□□ 1.22
USP48-213ENST00000529637 PELP1Q8IZL8 1130 aaKnown RBP22.69■■□□□ 1.22
USP48-213ENST00000529637 RSF1Q96T23 1441 aaPredicted RBP22.66■■□□□ 1.22
USP48-213ENST00000529637 SCAF1Q9H7N4 1312 aaKnown RBP22.64■■□□□ 1.21
USP48-213ENST00000529637 TRIM41Q8WV44 630 aa22.6■■□□□ 1.21
USP48-213ENST00000529637 FAM9AQ8IZU1 332 aaPredicted RBP22.59■■□□□ 1.21
USP48-213ENST00000529637 EHMT2Q96KQ7 1210 aa22.55■■□□□ 1.2
USP48-213ENST00000529637 RB1CC1Q8TDY2 1594 aa22.41■■□□□ 1.18
USP48-213ENST00000529637 NACADO15069 1562 aa22.37■■□□□ 1.17
USP48-213ENST00000529637 CECR2Q9BXF3 1484 aa22.37■■□□□ 1.17
USP48-213ENST00000529637 ZEB1P37275 1124 aaPredicted RBP22.36■■□□□ 1.17
USP48-213ENST00000529637 MROH2BQ7Z745 1585 aa22.25■■□□□ 1.15
USP48-213ENST00000529637 WIZO95785 1651 aa22.11■■□□□ 1.13
USP48-213ENST00000529637 NEUROD1Q13562 356 aa22.06■■□□□ 1.12
USP48-213ENST00000529637 ACIN1Q9UKV3 1341 aaKnown RBP22.03■■□□□ 1.12
USP48-213ENST00000529637 BAZ1AQ9NRL2 1556 aaPredicted RBP21.92■■□□□ 1.1
USP48-213ENST00000529637 GTF3C3Q9Y5Q9 886 aa21.91■■□□□ 1.1
USP48-213ENST00000529637 PABPN1Q86U42 306 aaKnown RBP eCLIP21.89■■□□□ 1.09
USP48-213ENST00000529637 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.88■■□□□ 1.09
USP48-213ENST00000529637 TTBK1Q5TCY1 1321 aaPredicted RBP21.79■■□□□ 1.08
USP48-213ENST00000529637 CCER1Q8TC90 406 aaPredicted RBP21.74■■□□□ 1.07
USP48-213ENST00000529637 DIEXFQ68CQ4 756 aaKnown RBP21.72■■□□□ 1.07
USP48-213ENST00000529637 ABCC8Q09428 1581 aa21.72■■□□□ 1.07
USP48-213ENST00000529637 CCDC88BA6NC98 1476 aa21.71■■□□□ 1.07
USP48-213ENST00000529637 SMARCA4P51532 1647 aa21.71■■□□□ 1.07
USP48-213ENST00000529637 TOP2AP11388 1531 aaKnown RBP21.7■■□□□ 1.06
USP48-213ENST00000529637 MYT1Q01538 1121 aa21.68■■□□□ 1.06
USP48-213ENST00000529637 CENPBP07199 599 aaPredicted RBP21.66■■□□□ 1.06
USP48-213ENST00000529637 UBTFP17480 764 aaKnown RBP21.62■■□□□ 1.05
USP48-213ENST00000529637 UNC13AQ9UPW8 1703 aa21.6■■□□□ 1.05
USP48-213ENST00000529637 SMARCA2P51531 1590 aa21.59■■□□□ 1.05
USP48-213ENST00000529637 EIF4G1Q04637 1599 aaKnown RBP21.58■■□□□ 1.04
USP48-213ENST00000529637 SOGA1O94964 1423 aa21.55■■□□□ 1.04
USP48-213ENST00000529637 CSRNP3Q8WYN3 585 aa21.5■■□□□ 1.03
USP48-213ENST00000529637 YTHDC1Q96MU7 727 aaKnown RBP21.46■■□□□ 1.03
USP48-213ENST00000529637 CEP162Q5TB80 1403 aa21.44■■□□□ 1.02
USP48-213ENST00000529637 RUSC2Q8N2Y8 1516 aa21.42■■□□□ 1.02
USP48-213ENST00000529637 BICRAQ9NZM4 1560 aa21.39■■□□□ 1.02
USP48-213ENST00000529637 RANGAP1P46060 587 aaPredicted RBP21.37■■□□□ 1.01
USP48-213ENST00000529637 WRNQ14191 1432 aaPredicted RBP eCLIP21.36■■□□□ 1.01
USP48-213ENST00000529637 TNIKQ9UKE5 1360 aa21.34■■□□□ 1.01
USP48-213ENST00000529637 EEA1Q15075 1411 aa21.31■■□□□ 1
USP48-213ENST00000529637 ZNF316A6NFI3 1004 aaPredicted RBP21.29■■□□□ 1
USP48-213ENST00000529637 BAZ1BQ9UIG0 1483 aaKnown RBP21.25■□□□□ 0.99
USP48-213ENST00000529637 GOLGA3Q08378 1498 aa21.24■□□□□ 0.99
USP48-213ENST00000529637 MIER1Q8N108 512 aa21.24■□□□□ 0.99
USP48-213ENST00000529637 ATAD2BQ9ULI0 1458 aa21.22■□□□□ 0.99
USP48-213ENST00000529637 APLP2Q06481 763 aa21.17■□□□□ 0.98
USP48-213ENST00000529637 HNRNPUL2Q1KMD3 747 aaKnown RBP21.16■□□□□ 0.98
USP48-213ENST00000529637 SYNJ1O43426 1573 aa21.14■□□□□ 0.97
USP48-213ENST00000529637 PEG3Q9GZU2 1588 aa21.13■□□□□ 0.97
USP48-213ENST00000529637 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
USP48-213ENST00000529637 CLIP1P30622 1438 aa21.09■□□□□ 0.97
USP48-213ENST00000529637 RAPGEF2Q9Y4G8 1499 aa20.99■□□□□ 0.95
USP48-213ENST00000529637 KIF21BO75037 1637 aa20.93■□□□□ 0.94
USP48-213ENST00000529637 VPS8Q8N3P4 1428 aa20.91■□□□□ 0.94
USP48-213ENST00000529637 SUPT16HQ9Y5B9 1047 aaKnown RBP20.85■□□□□ 0.93
USP48-213ENST00000529637 TOP2BQ02880 1626 aa20.81■□□□□ 0.92
USP48-213ENST00000529637 NCAPD3P42695 1498 aa20.75■□□□□ 0.91
USP48-213ENST00000529637 TSHZ2Q9NRE2 1034 aa20.74■□□□□ 0.91
USP48-213ENST00000529637 KIF27Q86VH2 1401 aa20.71■□□□□ 0.91
USP48-213ENST00000529637 KANK4Q5T7N3 995 aaPredicted RBP20.69■□□□□ 0.9
USP48-213ENST00000529637 CUX1P39880 1505 aa20.69■□□□□ 0.9
USP48-213ENST00000529637 ITGAEP38570 1179 aa20.68■□□□□ 0.9
USP48-213ENST00000529637 HMGXB3Q12766 1538 aa20.67■□□□□ 0.9
USP48-213ENST00000529637 ANP32EQ9BTT0 268 aa20.67■□□□□ 0.9
USP48-213ENST00000529637 BIVM-ERCC5R4GMW8 1640 aa20.67■□□□□ 0.9
USP48-213ENST00000529637 PRXQ9BXM0 1461 aa20.66■□□□□ 0.9
USP48-213ENST00000529637 CFTRP13569 1480 aa20.6■□□□□ 0.89
USP48-213ENST00000529637 ERICH3Q5RHP9 1530 aa20.6■□□□□ 0.89
USP48-213ENST00000529637 BCL11AQ9H165 835 aa20.6■□□□□ 0.89
USP48-213ENST00000529637 ARAP1Q96P48 1450 aa20.6■□□□□ 0.89
USP48-213ENST00000529637 ATP1B4Q9UN42 357 aaPredicted RBP20.57■□□□□ 0.88
USP48-213ENST00000529637 CUX2O14529 1486 aa20.56■□□□□ 0.88
USP48-213ENST00000529637 CLSPNQ9HAW4 1339 aa20.55■□□□□ 0.88
USP48-213ENST00000529637 KCNH8Q96L42 1107 aa20.52■□□□□ 0.88
USP48-213ENST00000529637 P3H3Q8IVL6 736 aa20.51■□□□□ 0.87
USP48-213ENST00000529637 BCANQ96GW7 911 aa20.51■□□□□ 0.87
USP48-213ENST00000529637 CADPSQ9ULU8 1353 aa20.48■□□□□ 0.87
USP48-213ENST00000529637 ARHGAP35Q9NRY4 1499 aa20.45■□□□□ 0.86
USP48-213ENST00000529637 IGF1RP08069 1367 aa20.45■□□□□ 0.86
USP48-213ENST00000529637 DHX57Q6P158 1386 aaKnown RBP20.45■□□□□ 0.86
USP48-213ENST00000529637 CARMIL1Q5VZK9 1371 aa20.44■□□□□ 0.86
USP48-213ENST00000529637 CCNB3Q8WWL7 1395 aa20.42■□□□□ 0.86
USP48-213ENST00000529637 FGD5Q6ZNL6 1462 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms