RNA–Protein interactions for RNA: ENST00000546211.5

SKP2-208, Transcript of S-phase kinase associated protein 2, humanhuman

TSL 5 BASIC

Gene SKP2, Length 1,589 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP2-208ENST00000546211 NISCHQ9Y2I1 1504 aa44.4■■■■■ 4.7
SKP2-208ENST00000546211 CCDC180Q9P1Z9 1646 aa38.83■■■■□ 3.81
SKP2-208ENST00000546211 ZCCHC6Q5VYS8 1495 aaKnown RBP37.26■■■■□ 3.56
SKP2-208ENST00000546211 ABCC9O60706 1549 aa36.84■■■■□ 3.49
SKP2-208ENST00000546211 DCAF1Q9Y4B6 1507 aa36.74■■■■□ 3.47
SKP2-208ENST00000546211 DCAF8L2P0C7V8 631 aa36.73■■■■□ 3.47
SKP2-208ENST00000546211 MYO15BQ96JP2 1530 aa36.38■■■■□ 3.41
SKP2-208ENST00000546211 NACADO15069 1562 aa36.21■■■■□ 3.39
SKP2-208ENST00000546211 SHROOM4Q9ULL8 1493 aa36.07■■■■□ 3.36
SKP2-208ENST00000546211 RB1CC1Q8TDY2 1594 aa35.95■■■■□ 3.35
SKP2-208ENST00000546211 SCRIBQ14160 1630 aa35.65■■■■□ 3.3
SKP2-208ENST00000546211 UNC13AQ9UPW8 1703 aa35.13■■■■□ 3.22
SKP2-208ENST00000546211 BICRAQ9NZM4 1560 aa34.8■■■■□ 3.16
SKP2-208ENST00000546211 PABPN1Q86U42 306 aaKnown RBP eCLIP34.69■■■■□ 3.14
SKP2-208ENST00000546211 SUPT5HO00267 1087 aaKnown RBP34.63■■■■□ 3.13
SKP2-208ENST00000546211 CECR2Q9BXF3 1484 aa34.48■■■■□ 3.11
SKP2-208ENST00000546211 RSF1Q96T23 1441 aaPredicted RBP34.35■■■■□ 3.09
SKP2-208ENST00000546211 BAZ1AQ9NRL2 1556 aaPredicted RBP34.33■■■■□ 3.09
SKP2-208ENST00000546211 MROH2BQ7Z745 1585 aa34.27■■■■□ 3.08
SKP2-208ENST00000546211 SMARCA4P51532 1647 aa34.17■■■■□ 3.06
SKP2-208ENST00000546211 WIZO95785 1651 aa33.98■■■■□ 3.03
SKP2-208ENST00000546211 EIF4G1Q04637 1599 aaKnown RBP33.8■■■■□ 3
SKP2-208ENST00000546211 PEG3Q9GZU2 1588 aa33.76■■■■□ 3
SKP2-208ENST00000546211 TOP2AP11388 1531 aaKnown RBP33.66■■■□□ 2.98
SKP2-208ENST00000546211 SMARCA2P51531 1590 aa33.66■■■□□ 2.98
SKP2-208ENST00000546211 ATAD2BQ9ULI0 1458 aa33.65■■■□□ 2.98
SKP2-208ENST00000546211 BAZ1BQ9UIG0 1483 aaKnown RBP33.48■■■□□ 2.95
SKP2-208ENST00000546211 NCAPD3P42695 1498 aa33.4■■■□□ 2.94
SKP2-208ENST00000546211 HMGXB3Q12766 1538 aa33.36■■■□□ 2.93
SKP2-208ENST00000546211 CC2D2AQ9P2K1 1620 aa33.34■■■□□ 2.93
SKP2-208ENST00000546211 CCDC88BA6NC98 1476 aa33.29■■■□□ 2.92
SKP2-208ENST00000546211 CHIC1Q5VXU3 224 aa33.04■■■□□ 2.88
SKP2-208ENST00000546211 CFTRP13569 1480 aa32.61■■■□□ 2.81
SKP2-208ENST00000546211 TRIM41Q8WV44 630 aa32.61■■■□□ 2.81
SKP2-208ENST00000546211 DNAJC5BQ9UF47 199 aa32.58■■■□□ 2.81
SKP2-208ENST00000546211 CADPSQ9ULU8 1353 aa32.54■■■□□ 2.8
SKP2-208ENST00000546211 ABCC8Q09428 1581 aa32.52■■■□□ 2.8
SKP2-208ENST00000546211 PRDM2Q13029 1718 aa32.44■■■□□ 2.78
SKP2-208ENST00000546211 WRNQ14191 1432 aaPredicted RBP eCLIP32.38■■■□□ 2.77
SKP2-208ENST00000546211 LAMC3Q9Y6N6 1575 aa32.32■■■□□ 2.76
SKP2-208ENST00000546211 NESP48681 1621 aa32.27■■■□□ 2.76
SKP2-208ENST00000546211 SYNJ1O43426 1573 aa32.22■■■□□ 2.75
SKP2-208ENST00000546211 FANCD2Q9BXW9 1451 aa32.18■■■□□ 2.74
SKP2-208ENST00000546211 TOP2BQ02880 1626 aa32.13■■■□□ 2.73
SKP2-208ENST00000546211 BIVM-ERCC5R4GMW8 1640 aa32.09■■■□□ 2.73
SKP2-208ENST00000546211 PDS5BQ9NTI5 1447 aa32.09■■■□□ 2.73
SKP2-208ENST00000546211 CUX1P39880 1505 aa32.07■■■□□ 2.72
SKP2-208ENST00000546211 CEP164Q9UPV0 1460 aa32.01■■■□□ 2.72
SKP2-208ENST00000546211 FAM9AQ8IZU1 332 aaPredicted RBP31.97■■■□□ 2.71
SKP2-208ENST00000546211 KIF21AQ7Z4S6 1674 aa31.89■■■□□ 2.7
SKP2-208ENST00000546211 SOGA1O94964 1423 aa31.88■■■□□ 2.69
SKP2-208ENST00000546211 DNMBPQ6XZF7 1577 aa31.87■■■□□ 2.69
SKP2-208ENST00000546211 EEA1Q15075 1411 aa31.86■■■□□ 2.69
SKP2-208ENST00000546211 TOPBP1Q92547 1522 aa31.8■■■□□ 2.68
SKP2-208ENST00000546211 URB2Q14146 1524 aaKnown RBP31.76■■■□□ 2.68
SKP2-208ENST00000546211 FGD5Q6ZNL6 1462 aa31.76■■■□□ 2.68
SKP2-208ENST00000546211 RUSC2Q8N2Y8 1516 aa31.74■■■□□ 2.67
SKP2-208ENST00000546211 LOC105371045A0A1W2PR82 267 aa31.74■■■□□ 2.67
SKP2-208ENST00000546211 MRC2Q9UBG0 1479 aa31.67■■■□□ 2.66
SKP2-208ENST00000546211 CSRNP3Q8WYN3 585 aa31.66■■■□□ 2.66
SKP2-208ENST00000546211 ERCC6Q03468 1493 aa31.66■■■□□ 2.66
SKP2-208ENST00000546211 POLA1P09884 1462 aaPredicted RBP31.63■■■□□ 2.65
SKP2-208ENST00000546211 KIF27Q86VH2 1401 aa31.59■■■□□ 2.65
SKP2-208ENST00000546211 CUX2O14529 1486 aa31.53■■■□□ 2.64
SKP2-208ENST00000546211 RAD54L2Q9Y4B4 1467 aa31.51■■■□□ 2.63
SKP2-208ENST00000546211 EHMT2Q96KQ7 1210 aa31.51■■■□□ 2.63
SKP2-208ENST00000546211 WDR62O43379 1518 aa31.49■■■□□ 2.63
SKP2-208ENST00000546211 ABCA10Q8WWZ4 1543 aa31.49■■■□□ 2.63
SKP2-208ENST00000546211 THOC2Q8NI27 1593 aaKnown RBP31.43■■■□□ 2.62
SKP2-208ENST00000546211 KIF21BO75037 1637 aa31.42■■■□□ 2.62
SKP2-208ENST00000546211 GOLGA3Q08378 1498 aa31.39■■■□□ 2.62
SKP2-208ENST00000546211 WDR97A6NE52 1622 aa31.38■■■□□ 2.61
SKP2-208ENST00000546211 TARBP1Q13395 1621 aaKnown RBP31.33■■■□□ 2.61
SKP2-208ENST00000546211 PRXQ9BXM0 1461 aa31.3■■■□□ 2.6
SKP2-208ENST00000546211 IGF1RP08069 1367 aa31.29■■■□□ 2.6
SKP2-208ENST00000546211 IFT140Q96RY7 1462 aa31.26■■■□□ 2.59
SKP2-208ENST00000546211 UBTFP17480 764 aaKnown RBP31.26■■■□□ 2.59
SKP2-208ENST00000546211 ERICH3Q5RHP9 1530 aa31.26■■■□□ 2.59
SKP2-208ENST00000546211 RAPGEF2Q9Y4G8 1499 aa31.24■■■□□ 2.59
SKP2-208ENST00000546211 TNIKQ9UKE5 1360 aa31.24■■■□□ 2.59
SKP2-208ENST00000546211 ABCA5Q8WWZ7 1642 aa31.24■■■□□ 2.59
SKP2-208ENST00000546211 TDRD9Q8NDG6 1382 aaKnown RBP31.23■■■□□ 2.59
SKP2-208ENST00000546211 GAPVD1Q14C86 1478 aa31.2■■■□□ 2.58
SKP2-208ENST00000546211 CARMIL1Q5VZK9 1371 aa31.15■■■□□ 2.58
SKP2-208ENST00000546211 CUL7Q14999 1698 aa31.11■■■□□ 2.57
SKP2-208ENST00000546211 CEP162Q5TB80 1403 aa31.06■■■□□ 2.56
SKP2-208ENST00000546211 AQRO60306 1485 aaKnown RBP eCLIP31.06■■■□□ 2.564e-6■■■■□ 24.8
SKP2-208ENST00000546211 ZNF608Q9ULD9 1512 aaPredicted RBP31.04■■■□□ 2.56
SKP2-208ENST00000546211 PBRM1Q86U86 1689 aa31.02■■■□□ 2.56
SKP2-208ENST00000546211 GRIN2BQ13224 1484 aa30.99■■■□□ 2.55
SKP2-208ENST00000546211 EIF4G3O43432 1585 aaKnown RBP30.96■■■□□ 2.55
SKP2-208ENST00000546211 FHAD1B1AJZ9 1412 aa30.87■■■□□ 2.53
SKP2-208ENST00000546211 CLIP1P30622 1438 aa30.87■■■□□ 2.53
SKP2-208ENST00000546211 ADAMTS12P58397 1594 aa30.85■■■□□ 2.53
SKP2-208ENST00000546211 SNAPC4Q5SXM2 1469 aa30.79■■■□□ 2.52
SKP2-208ENST00000546211 RANGAP1P46060 587 aaPredicted RBP30.77■■■□□ 2.52
SKP2-208ENST00000546211 MAGI1Q96QZ7 1491 aaPredicted RBP30.75■■■□□ 2.51
SKP2-208ENST00000546211 CTTNBP2Q8WZ74 1663 aa30.72■■■□□ 2.51
SKP2-208ENST00000546211 SYNJ2O15056 1496 aa30.63■■■□□ 2.49
SKP2-208ENST00000546211 GRIN2AQ12879 1464 aa30.6■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms