Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SEC61A2Q9H9S3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.73■■□□□ 1.07
SEC61A2Q9H9S3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
SEC61A2Q9H9S3 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
SEC61A2Q9H9S3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SEC61A2Q9H9S3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SEC61A2Q9H9S3 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.72■■□□□ 1.07
SEC61A2Q9H9S3 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
SEC61A2Q9H9S3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.72■■□□□ 1.07
SEC61A2Q9H9S3 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SEC61A2Q9H9S3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SEC61A2Q9H9S3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SEC61A2Q9H9S3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SEC61A2Q9H9S3 GPX1-201ENST00000419349 1106 ntBASIC21.71■■□□□ 1.07
SEC61A2Q9H9S3 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.71■■□□□ 1.07
SEC61A2Q9H9S3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SEC61A2Q9H9S3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SEC61A2Q9H9S3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.7■■□□□ 1.06
SEC61A2Q9H9S3 AC126177.7-201ENST00000547904 679 ntBASIC21.7■■□□□ 1.06
SEC61A2Q9H9S3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.7■■□□□ 1.06
SEC61A2Q9H9S3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SEC61A2Q9H9S3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SEC61A2Q9H9S3 AC022413.1-201ENST00000624602 984 ntBASIC21.69■■□□□ 1.06
SEC61A2Q9H9S3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SEC61A2Q9H9S3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.69■■□□□ 1.06
SEC61A2Q9H9S3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SEC61A2Q9H9S3 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.69■■□□□ 1.06
SEC61A2Q9H9S3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SEC61A2Q9H9S3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.68■■□□□ 1.06
SEC61A2Q9H9S3 AC060814.1-201ENST00000554326 538 ntBASIC21.68■■□□□ 1.06
SEC61A2Q9H9S3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SEC61A2Q9H9S3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
SEC61A2Q9H9S3 AC091060.1-201ENST00000623524 1766 ntBASIC21.68■■□□□ 1.06
SEC61A2Q9H9S3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SEC61A2Q9H9S3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SEC61A2Q9H9S3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SEC61A2Q9H9S3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.67■■□□□ 1.06
SEC61A2Q9H9S3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SEC61A2Q9H9S3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SEC61A2Q9H9S3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.66■■□□□ 1.06
SEC61A2Q9H9S3 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SEC61A2Q9H9S3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SEC61A2Q9H9S3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
SEC61A2Q9H9S3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SEC61A2Q9H9S3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.65■■□□□ 1.06
SEC61A2Q9H9S3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SEC61A2Q9H9S3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.64■■□□□ 1.05
SEC61A2Q9H9S3 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.64■■□□□ 1.05
SEC61A2Q9H9S3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.64■■□□□ 1.05
SEC61A2Q9H9S3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.64■■□□□ 1.05
SEC61A2Q9H9S3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SEC61A2Q9H9S3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SEC61A2Q9H9S3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.63■■□□□ 1.05
SEC61A2Q9H9S3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.63■■□□□ 1.05
SEC61A2Q9H9S3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SEC61A2Q9H9S3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SEC61A2Q9H9S3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.62■■□□□ 1.05
SEC61A2Q9H9S3 AC092803.2-201ENST00000564287 1899 ntBASIC21.62■■□□□ 1.05
SEC61A2Q9H9S3 AL359504.2-201ENST00000605506 1601 ntBASIC21.62■■□□□ 1.05
SEC61A2Q9H9S3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.62■■□□□ 1.05
SEC61A2Q9H9S3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SEC61A2Q9H9S3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.62■■□□□ 1.05
SEC61A2Q9H9S3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.62■■□□□ 1.05
SEC61A2Q9H9S3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.61■■□□□ 1.05
SEC61A2Q9H9S3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SEC61A2Q9H9S3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SEC61A2Q9H9S3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.61■■□□□ 1.05
SEC61A2Q9H9S3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
SEC61A2Q9H9S3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
SEC61A2Q9H9S3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEC61A2Q9H9S3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEC61A2Q9H9S3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
SEC61A2Q9H9S3 AC145676.1-201ENST00000514988 2004 ntBASIC21.6■■□□□ 1.05
SEC61A2Q9H9S3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.6■■□□□ 1.05
SEC61A2Q9H9S3 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SEC61A2Q9H9S3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.59■■□□□ 1.05
SEC61A2Q9H9S3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.59■■□□□ 1.05
SEC61A2Q9H9S3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SEC61A2Q9H9S3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SEC61A2Q9H9S3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SEC61A2Q9H9S3 AL157400.5-201ENST00000507624 621 ntBASIC21.58■■□□□ 1.05
SEC61A2Q9H9S3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.58■■□□□ 1.05
SEC61A2Q9H9S3 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
SEC61A2Q9H9S3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.04
SEC61A2Q9H9S3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SEC61A2Q9H9S3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SEC61A2Q9H9S3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SEC61A2Q9H9S3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
SEC61A2Q9H9S3 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.57■■□□□ 1.04
SEC61A2Q9H9S3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
SEC61A2Q9H9S3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SEC61A2Q9H9S3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SEC61A2Q9H9S3 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SEC61A2Q9H9S3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SEC61A2Q9H9S3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
SEC61A2Q9H9S3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEC61A2Q9H9S3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEC61A2Q9H9S3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
SEC61A2Q9H9S3 AC092296.2-201ENST00000589470 999 ntBASIC21.56■■□□□ 1.04
SEC61A2Q9H9S3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms