RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 DCAF8L2P0C7V8 631 aa38.44■■■■□ 3.74
TM9SF3-201ENST00000371142 SUPT5HO00267 1087 aaKnown RBP36.44■■■■□ 3.42
TM9SF3-201ENST00000371142 EHMT2Q96KQ7 1210 aa35.75■■■■□ 3.31
TM9SF3-201ENST00000371142 SHROOM4Q9ULL8 1493 aa35.71■■■■□ 3.31
TM9SF3-201ENST00000371142 NISCHQ9Y2I1 1504 aa35.34■■■■□ 3.25
TM9SF3-201ENST00000371142 PELP1Q8IZL8 1130 aaKnown RBP35.03■■■■□ 3.2
TM9SF3-201ENST00000371142 APLP2Q06481 763 aa34.83■■■■□ 3.17
TM9SF3-201ENST00000371142 TTBK1Q5TCY1 1321 aaPredicted RBP34.55■■■■□ 3.12
TM9SF3-201ENST00000371142 FAM9AQ8IZU1 332 aaPredicted RBP34.54■■■■□ 3.12
TM9SF3-201ENST00000371142 PCGF6Q9BYE7 350 aa34.17■■■■□ 3.06
TM9SF3-201ENST00000371142 RANGAP1P46060 587 aaPredicted RBP34.1■■■■□ 3.05
TM9SF3-201ENST00000371142 ERICH6Q7L0X2 663 aa33.8■■■■□ 3
TM9SF3-201ENST00000371142 ATP1B4Q9UN42 357 aaPredicted RBP33.78■■■■□ 3
TM9SF3-201ENST00000371142 CENPBP07199 599 aaPredicted RBP33.68■■■□□ 2.98
TM9SF3-201ENST00000371142 CCER1Q8TC90 406 aaPredicted RBP33.68■■■□□ 2.98
TM9SF3-201ENST00000371142 TRIM41Q8WV44 630 aa33.61■■■□□ 2.97
TM9SF3-201ENST00000371142 ZEB1P37275 1124 aaPredicted RBP33.48■■■□□ 2.95
TM9SF3-201ENST00000371142 UBTFP17480 764 aaKnown RBP33.39■■■□□ 2.94
TM9SF3-201ENST00000371142 YTHDC1Q96MU7 727 aaKnown RBP33.24■■■□□ 2.91
TM9SF3-201ENST00000371142 NEFLP07196 543 aa33.12■■■□□ 2.89
TM9SF3-201ENST00000371142 PPARGC1BQ86YN6 1023 aaKnown RBP33.05■■■□□ 2.88
TM9SF3-201ENST00000371142 ITGAEP38570 1179 aa32.58■■■□□ 2.81
TM9SF3-201ENST00000371142 POLR3GLQ9BT43 218 aa32.55■■■□□ 2.8
TM9SF3-201ENST00000371142 MYT1LQ9UL68 1186 aa32.53■■■□□ 2.8
TM9SF3-201ENST00000371142 TRIM26Q12899 539 aaPredicted RBP32.47■■■□□ 2.79
TM9SF3-201ENST00000371142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.46■■■□□ 2.79
TM9SF3-201ENST00000371142 HNRNPUL2Q1KMD3 747 aaKnown RBP32.46■■■□□ 2.79
TM9SF3-201ENST00000371142 CNGB1Q14028 1251 aaPredicted RBP32.31■■■□□ 2.76
TM9SF3-201ENST00000371142 DAXXQ9UER7 740 aaPredicted RBP32.31■■■□□ 2.76
TM9SF3-201ENST00000371142 MYT1Q01538 1121 aa32.25■■■□□ 2.75
TM9SF3-201ENST00000371142 HRCP23327 699 aa32.2■■■□□ 2.74
TM9SF3-201ENST00000371142 LOC105371045A0A1W2PR82 267 aa32.15■■■□□ 2.74
TM9SF3-201ENST00000371142 CHIC1Q5VXU3 224 aa32.1■■■□□ 2.73
TM9SF3-201ENST00000371142 SLC4A1APQ9BWU0 796 aaKnown RBP31.96■■■□□ 2.71
TM9SF3-201ENST00000371142 CLSPNQ9HAW4 1339 aa31.63■■■□□ 2.65
TM9SF3-201ENST00000371142 FAM50AQ14320 339 aaKnown RBP31.61■■■□□ 2.65
TM9SF3-201ENST00000371142 ZNF316A6NFI3 1004 aaPredicted RBP31.58■■■□□ 2.65
TM9SF3-201ENST00000371142 DIEXFQ68CQ4 756 aaKnown RBP31.55■■■□□ 2.64
TM9SF3-201ENST00000371142 TRIM52Q96A61 297 aa31.49■■■□□ 2.63
TM9SF3-201ENST00000371142 RTL5Q5HYW3 569 aaPredicted RBP31.47■■■□□ 2.63
TM9SF3-201ENST00000371142 NEUROD1Q13562 356 aa31.42■■■□□ 2.62
TM9SF3-201ENST00000371142 BCANQ96GW7 911 aa31.27■■■□□ 2.6
TM9SF3-201ENST00000371142 ZNF326Q5BKZ1 582 aaKnown RBP31.24■■■□□ 2.59
TM9SF3-201ENST00000371142 PABPN1Q86U42 306 aaKnown RBP eCLIP31.19■■■□□ 2.58
TM9SF3-201ENST00000371142 ANP32CO43423 234 aa31.05■■■□□ 2.56
TM9SF3-201ENST00000371142 FBLN2P98095 1184 aa30.98■■■□□ 2.55
TM9SF3-201ENST00000371142 BCL11AQ9H165 835 aa30.97■■■□□ 2.55
TM9SF3-201ENST00000371142 GTF3C3Q9Y5Q9 886 aa30.96■■■□□ 2.55
TM9SF3-201ENST00000371142 ZBTB47Q9UFB7 747 aaPredicted RBP30.96■■■□□ 2.55
TM9SF3-201ENST00000371142 SLC24A1O60721 1099 aa30.93■■■□□ 2.54
TM9SF3-201ENST00000371142 ABCC9O60706 1549 aa30.92■■■□□ 2.54
TM9SF3-201ENST00000371142 CDK11AQ9UQ88 783 aaPredicted RBP30.89■■■□□ 2.54
TM9SF3-201ENST00000371142 CANXP27824 592 aaKnown RBP30.84■■■□□ 2.53
TM9SF3-201ENST00000371142 ARID3CA6NKF2 412 aa30.81■■■□□ 2.52
TM9SF3-201ENST00000371142 P3H3Q8IVL6 736 aa30.75■■■□□ 2.51
TM9SF3-201ENST00000371142 NEFMP07197 916 aa30.62■■■□□ 2.49
TM9SF3-201ENST00000371142 ZNF777Q9ULD5 760 aaPredicted RBP30.57■■■□□ 2.48
TM9SF3-201ENST00000371142 NPM2Q86SE8 214 aaKnown RBP30.45■■■□□ 2.46
TM9SF3-201ENST00000371142 ANP32AP39687 249 aaKnown RBP30.4■■■□□ 2.46
TM9SF3-201ENST00000371142 CSRNP3Q8WYN3 585 aa30.35■■■□□ 2.45
TM9SF3-201ENST00000371142 ACIN1Q9UKV3 1341 aaKnown RBP30.33■■■□□ 2.45
TM9SF3-201ENST00000371142 CHGAP10645 457 aaKnown RBP30.24■■■□□ 2.43
TM9SF3-201ENST00000371142 PLPPR3Q6T4P5 718 aa30.19■■■□□ 2.42
TM9SF3-201ENST00000371142 ESF1Q9H501 851 aaKnown RBP30.18■■■□□ 2.42
TM9SF3-201ENST00000371142 FKBP8Q14318 412 aa30.18■■■□□ 2.42
TM9SF3-201ENST00000371142 TONSLQ96HA7 1378 aa30.14■■■□□ 2.42
TM9SF3-201ENST00000371142 STAG3Q9UJ98 1225 aa30.14■■■□□ 2.42
TM9SF3-201ENST00000371142 FAM9BQ8IZU0 186 aa30.1■■■□□ 2.41
TM9SF3-201ENST00000371142 SALL2Q9Y467 1007 aaPredicted RBP30.1■■■□□ 2.41
TM9SF3-201ENST00000371142 HSP90AA1P07900 732 aaKnown RBP30.09■■■□□ 2.41
TM9SF3-201ENST00000371142 HNRNPUQ00839 825 aaKnown RBP eCLIP30.08■■■□□ 2.41
TM9SF3-201ENST00000371142 DDX10Q13206 875 aaKnown RBP30.03■■■□□ 2.4
TM9SF3-201ENST00000371142 ANP32BQ92688 251 aaKnown RBP29.99■■■□□ 2.39
TM9SF3-201ENST00000371142 UPF2Q9HAU5 1272 aaKnown RBP29.94■■■□□ 2.38
TM9SF3-201ENST00000371142 CHIC2Q9UKJ5 165 aa29.94■■■□□ 2.38
TM9SF3-201ENST00000371142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.93■■■□□ 2.381e-6■□□□□ 9.2
TM9SF3-201ENST00000371142 EIF5BO60841 1220 aaKnown RBP29.9■■■□□ 2.38
TM9SF3-201ENST00000371142 TMC1Q8TDI8 760 aa29.83■■■□□ 2.37
TM9SF3-201ENST00000371142 NPM1P06748 294 aaKnown RBP eCLIP29.82■■■□□ 2.36
TM9SF3-201ENST00000371142 CCDC136Q96JN2 1154 aa29.78■■■□□ 2.36
TM9SF3-201ENST00000371142 KDM2AQ9Y2K7 1162 aa29.77■■■□□ 2.36
TM9SF3-201ENST00000371142 SCRIBQ14160 1630 aa29.76■■■□□ 2.35
TM9SF3-201ENST00000371142 WDR43Q15061 677 aaKnown RBP eCLIP29.74■■■□□ 2.35
TM9SF3-201ENST00000371142 NBR1Q14596 966 aa29.72■■■□□ 2.35
TM9SF3-201ENST00000371142 ARXQ96QS3 562 aa29.72■■■□□ 2.35
TM9SF3-201ENST00000371142 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.71■■■□□ 2.35
TM9SF3-201ENST00000371142 MRS2Q9HD23 443 aa29.67■■■□□ 2.34
TM9SF3-201ENST00000371142 SCAF1Q9H7N4 1312 aaKnown RBP29.64■■■□□ 2.34
TM9SF3-201ENST00000371142 IRX6P78412 446 aaPredicted RBP29.63■■■□□ 2.33
TM9SF3-201ENST00000371142 HIRIP3Q9BW71 556 aaPredicted RBP29.63■■■□□ 2.33
TM9SF3-201ENST00000371142 SENP3Q9H4L4 574 aaPredicted RBP29.61■■■□□ 2.33
TM9SF3-201ENST00000371142 TSPY4P0CV99 314 aa29.58■■■□□ 2.33
TM9SF3-201ENST00000371142 TSPY10P0CW01 314 aa29.58■■■□□ 2.33
TM9SF3-201ENST00000371142 DCAF1Q9Y4B6 1507 aa29.52■■■□□ 2.32
TM9SF3-201ENST00000371142 A0A0G2JS52 829 aa29.52■■■□□ 2.32
TM9SF3-201ENST00000371142 MTUS2Q5JR59 1369 aa29.51■■■□□ 2.32
TM9SF3-201ENST00000371142 PLEKHG5O94827 1062 aa29.51■■■□□ 2.31
TM9SF3-201ENST00000371142 ZBTB7CA1YPR0 619 aa29.49■■■□□ 2.31
TM9SF3-201ENST00000371142 MIER1Q8N108 512 aa29.45■■■□□ 2.3
TM9SF3-201ENST00000371142 MYH16Q9H6N6 1097 aa29.45■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms