Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 KLHL24-202ENST00000427201 562 ntTSL 417.28■□□□□ 0.361e-6■■■■■ 28.9
LSM11P83369 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.99■□□□□ 0.311e-6■■■■■ 28.9
LSM11P83369 STRN4-208ENST00000594581 2692 ntTSL 216.96■□□□□ 0.311e-6■■■■■ 28.9
LSM11P83369 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.291e-6■■■■■ 28.9
LSM11P83369 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.82■□□□□ 0.281e-6■■■■■ 28.9
LSM11P83369 KLHL24-209ENST00000473045 542 ntTSL 416.56■□□□□ 0.241e-6■■■■■ 28.9
LSM11P83369 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.211e-6■■■■■ 28.9
LSM11P83369 RPL18-212ENST00000551749 2091 ntTSL 216.29■□□□□ 0.21e-6■■■■■ 28.9
LSM11P83369 SNX27-202ENST00000368841 7070 ntTSL 1 (best)16.14■□□□□ 0.171e-6■■■■■ 28.9
LSM11P83369 RPL18-213ENST00000552347 1645 ntTSL 516.06■□□□□ 0.161e-6■■■■■ 28.9
LSM11P83369 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.151e-6■■■■■ 28.9
LSM11P83369 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.121e-6■■■■■ 28.9
LSM11P83369 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.68■□□□□ 0.11e-6■■■■■ 28.9
LSM11P83369 KLHL24-208ENST00000468101 574 ntTSL 415.35■□□□□ 0.051e-6■■■■■ 28.9
LSM11P83369 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.08■□□□□ 05e-18■■■■■ 28.9
LSM11P83369 RPL18-201ENST00000084795 612 ntTSL 1 (best)14.96□□□□□ -0.011e-6■■■■■ 28.9
LSM11P83369 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.96□□□□□ -0.011e-6■■■■■ 28.9
LSM11P83369 RPL18-207ENST00000549533 666 ntTSL 214.96□□□□□ -0.011e-6■■■■■ 28.9
LSM11P83369 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.011e-6■■■■■ 28.9
LSM11P83369 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.96□□□□□ -0.011e-6■■■■■ 28.9
LSM11P83369 PRKCB-210ENST00000498739 569 ntTSL 414.82□□□□□ -0.047e-8■■■■■ 28.9
LSM11P83369 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.055e-18■■■■■ 28.9
LSM11P83369 ATG16L1-207ENST00000417017 684 ntTSL 514.39□□□□□ -0.111e-6■■■■■ 28.9
LSM11P83369 RPL18-206ENST00000549370 628 ntTSL 514.18□□□□□ -0.141e-6■■■■■ 28.9
LSM11P83369 ATG16L1-208ENST00000419681 644 ntTSL 513.99□□□□□ -0.171e-6■■■■■ 28.9
LSM11P83369 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.185e-18■■■■■ 28.9
LSM11P83369 ATG16L1-210ENST00000444735 691 ntTSL 513.95□□□□□ -0.181e-6■■■■■ 28.9
LSM11P83369 B2M-207ENST00000559907 499 ntTSL 313.79□□□□□ -0.21e-6■■■■■ 28.9
LSM11P83369 RPL18-202ENST00000546623 541 ntTSL 513.73□□□□□ -0.211e-6■■■■■ 28.9
LSM11P83369 KLHL24-210ENST00000475827 545 ntTSL 413.71□□□□□ -0.211e-6■■■■■ 28.9
LSM11P83369 SECISBP2L-202ENST00000380927 2551 ntTSL 1 (best)13.45□□□□□ -0.262e-12■■■■■ 28.9
LSM11P83369 B2M-210ENST00000560681 572 ntTSL 413.26□□□□□ -0.291e-6■■■■■ 28.9
LSM11P83369 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.21□□□□□ -0.291e-6■■■■■ 28.9
LSM11P83369 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.16□□□□□ -0.31e-6■■■■■ 28.9
LSM11P83369 ATG16L1-216ENST00000485623 568 ntTSL 212.95□□□□□ -0.341e-6■■■■■ 28.9
LSM11P83369 HOXB-AS1-202ENST00000502764 578 ntTSL 312.77□□□□□ -0.371e-6■■■■■ 28.9
LSM11P83369 MARK3-223ENST00000561071 746 ntTSL 312.61□□□□□ -0.395e-18■■■■■ 28.9
LSM11P83369 RPL18-204ENST00000547897 440 ntTSL 512.44□□□□□ -0.421e-6■■■■■ 28.9
LSM11P83369 B2M-202ENST00000544417 933 ntTSL 5 BASIC12.43□□□□□ -0.421e-6■■■■■ 28.9
LSM11P83369 SECISBP2L-208ENST00000559424 1084 ntTSL 1 (best)12.43□□□□□ -0.422e-12■■■■■ 28.9
LSM11P83369 ATG16L1-201ENST00000347464 2915 ntTSL 1 (best) BASIC12.39□□□□□ -0.438e-7■■■■■ 28.9
LSM11P83369 ACER3-201ENST00000278544 3500 ntTSL 1 (best)12.38□□□□□ -0.431e-6■■■■■ 28.9
LSM11P83369 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC12.32□□□□□ -0.441e-6■■■■■ 28.9
LSM11P83369 VRK1-206ENST00000557222 1029 ntTSL 512.19□□□□□ -0.461e-6■■■■■ 28.9
LSM11P83369 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC11.85□□□□□ -0.511e-6■■■■■ 28.9
LSM11P83369 MARK3-201ENST00000216288 2911 ntTSL 1 (best) BASIC11.76□□□□□ -0.535e-18■■■■■ 28.9
LSM11P83369 RPL18-215ENST00000552705 1081 ntTSL 211.7□□□□□ -0.541e-6■■■■■ 28.9
LSM11P83369 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC11.65□□□□□ -0.541e-6■■■■■ 28.9
LSM11P83369 BPHL-211ENST00000488487 1137 ntTSL 511.55□□□□□ -0.561e-6■■■■■ 28.9
LSM11P83369 ACER3-208ENST00000530334 931 ntTSL 211.48□□□□□ -0.571e-6■■■■■ 28.9
LSM11P83369 B2M-201ENST00000349264 732 ntTSL 311.48□□□□□ -0.571e-6■■■■■ 28.9
LSM11P83369 HOXB-AS1-204ENST00000508688 414 ntTSL 311.43□□□□□ -0.581e-6■■■■■ 28.9
LSM11P83369 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC11.41□□□□□ -0.581e-6■■■■■ 28.9
LSM11P83369 RPL18-203ENST00000547892 3844 nt11.41□□□□□ -0.581e-6■■■■■ 28.9
LSM11P83369 CSNK2A1-210ENST00000619801 655 ntTSL 311.38□□□□□ -0.591e-6■■■■■ 28.9
LSM11P83369 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC11.32□□□□□ -0.68e-7■■■■■ 28.9
LSM11P83369 BPHL-212ENST00000490918 3723 ntTSL 211.21□□□□□ -0.611e-6■■■■■ 28.9
LSM11P83369 MARK3-220ENST00000560417 579 ntTSL 311.13□□□□□ -0.635e-18■■■■■ 28.9
LSM11P83369 B2M-208ENST00000559916 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.631e-6■■■■■ 28.9
LSM11P83369 AL390719.1-203ENST00000456409 750 ntTSL 211.07□□□□□ -0.641e-6■■■■■ 28.9
LSM11P83369 AL390719.1-206ENST00000451054 565 ntTSL 211.04□□□□□ -0.641e-6■■■■■ 28.9
LSM11P83369 MARK3-225ENST00000561225 523 ntTSL 510.92□□□□□ -0.665e-18■■■■■ 28.9
LSM11P83369 LRRC8B-202ENST00000358200 1957 ntTSL 5 BASIC10.86□□□□□ -0.671e-6■■■■■ 28.9
LSM11P83369 ATG16L1-203ENST00000392017 3405 ntAPPRIS P4 TSL 1 (best) BASIC10.85□□□□□ -0.678e-7■■■■■ 28.9
LSM11P83369 RPL18-216ENST00000552851 691 ntTSL 510.82□□□□□ -0.681e-6■■■■■ 28.9
LSM11P83369 CPPED1-202ENST00000381774 6273 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.71e-6■■■■■ 28.9
LSM11P83369 MARK3-221ENST00000560603 572 ntTSL 410.63□□□□□ -0.715e-18■■■■■ 28.9
LSM11P83369 ACER3-210ENST00000531352 2093 ntTSL 1 (best)10.43□□□□□ -0.741e-6■■■■■ 28.9
LSM11P83369 B2M-212ENST00000561424 604 ntTSL 310.27□□□□□ -0.771e-6■■■■■ 28.9
LSM11P83369 ATG16L1-205ENST00000392020 3213 ntAPPRIS ALT1 TSL 1 (best) BASIC10.13□□□□□ -0.798e-7■■■■■ 28.9
LSM11P83369 AL390719.1-205ENST00000433695 540 ntTSL 210.06□□□□□ -0.81e-6■■■■■ 28.9
LSM11P83369 AC007405.1-201ENST00000442456 2149 ntTSL 2 BASIC10.04□□□□□ -0.81e-6■■■■■ 28.9
LSM11P83369 MARK3-212ENST00000558223 908 ntTSL 1 (best)10.02□□□□□ -0.815e-18■■■■■ 28.9
LSM11P83369 ATG16L1-215ENST00000479942 3559 ntTSL 1 (best)10□□□□□ -0.818e-7■■■■■ 28.9
LSM11P83369 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC9.91□□□□□ -0.821e-6■■■■■ 28.9
LSM11P83369 KLHL24-205ENST00000454652 7380 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.851e-6■■■■■ 28.9
LSM11P83369 ACER3-206ENST00000527508 531 ntTSL 29.72□□□□□ -0.851e-6■■■■■ 28.9
LSM11P83369 ATG16L1-206ENST00000392021 3301 ntTSL 1 (best)9.57□□□□□ -0.888e-7■■■■■ 28.9
LSM11P83369 ATG16L1-204ENST00000392018 3313 ntTSL 5 BASIC9.44□□□□□ -0.98e-7■■■■■ 28.9
LSM11P83369 SRCAP-205ENST00000483083 5937 ntTSL 29.35□□□□□ -0.913e-7■■■■■ 28.9
LSM11P83369 ACER3-213ENST00000533873 929 ntTSL 2 BASIC9.2□□□□□ -0.941e-6■■■■■ 28.9
LSM11P83369 SRSF7-210ENST00000452806 747 ntTSL 29.15□□□□□ -0.941e-6■■■■■ 28.9
LSM11P83369 B2M-204ENST00000558401 1715 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.961e-6■■■■■ 28.9
LSM11P83369 AC007405.1-204ENST00000623867 132 ntTSL 58.94□□□□□ -0.981e-6■■■■■ 28.9
LSM11P83369 AC108865.1-201ENST00000507644 496 ntTSL 3 BASIC8.88□□□□□ -0.991e-6■■■■■ 28.9
LSM11P83369 SRSF7-207ENST00000432873 603 ntTSL 38.88□□□□□ -0.991e-6■■■■■ 28.9
LSM11P83369 SNX27-201ENST00000368838 1308 ntTSL 1 (best) BASIC8.87□□□□□ -0.991e-6■■■■■ 28.9
LSM11P83369 ATG16L1-214ENST00000474148 4208 ntTSL 28.67□□□□□ -1.028e-7■■■■■ 28.9
LSM11P83369 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC8.47□□□□□ -1.052e-12■■■■■ 28.9
LSM11P83369 AL390719.1-202ENST00000394517 397 ntTSL 58.41□□□□□ -1.061e-6■■■■■ 28.9
LSM11P83369 MARK3-207ENST00000553942 2298 ntTSL 1 (best) BASIC8.41□□□□□ -1.065e-18■■■■■ 28.9
LSM11P83369 B2M-206ENST00000559720 1220 ntTSL 58.24□□□□□ -1.091e-6■■■■■ 28.9
LSM11P83369 BPHL-202ENST00000380375 1050 ntTSL 1 (best) BASIC8.23□□□□□ -1.091e-6■■■■■ 28.9
LSM11P83369 LRBA-211ENST00000513021 568 ntTSL 48.15□□□□□ -1.11e-6■■■■■ 28.9
LSM11P83369 BPHL-204ENST00000423798 576 ntTSL 38.11□□□□□ -1.111e-6■■■■■ 28.9
LSM11P83369 ACER3-212ENST00000532485 7378 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.111e-6■■■■■ 28.9
LSM11P83369 MARK3-203ENST00000335102 2331 ntTSL 5 BASIC8.01□□□□□ -1.135e-18■■■■■ 28.9
LSM11P83369 BPHL-209ENST00000464040 691 ntTSL 57.94□□□□□ -1.141e-6■■■■■ 28.9
LSM11P83369 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC7.94□□□□□ -1.142e-12■■■■■ 28.9
LSM11P83369 SRSF7-212ENST00000487773 637 ntTSL 57.82□□□□□ -1.161e-6■■■■■ 28.9
Retrieved 100 of 11,495 protein–RNA pairs in 373.6 ms