RNA–Protein interactions for RNA: ENST00000278544.9

ACER3-201, Transcript of alkaline ceramidase 3, humanhuman

TSL 1 (best)

Gene ACER3, Length 3,500 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACER3-201ENST00000278544 NISCHQ9Y2I1 1504 aa29.83■■■□□ 2.37
ACER3-201ENST00000278544 CCDC180Q9P1Z9 1646 aa25.69■■□□□ 1.7
ACER3-201ENST00000278544 DCAF8L2P0C7V8 631 aa25.67■■□□□ 1.7
ACER3-201ENST00000278544 ABCC9O60706 1549 aa25.22■■□□□ 1.63
ACER3-201ENST00000278544 SHROOM4Q9ULL8 1493 aa25.08■■□□□ 1.61
ACER3-201ENST00000278544 ZCCHC6Q5VYS8 1495 aaKnown RBP24.95■■□□□ 1.58
ACER3-201ENST00000278544 DCAF1Q9Y4B6 1507 aa24.27■■□□□ 1.48
ACER3-201ENST00000278544 SCRIBQ14160 1630 aa24.22■■□□□ 1.47
ACER3-201ENST00000278544 NACADO15069 1562 aa24.12■■□□□ 1.45
ACER3-201ENST00000278544 SUPT5HO00267 1087 aaKnown RBP24.09■■□□□ 1.45
ACER3-201ENST00000278544 RB1CC1Q8TDY2 1594 aa24.05■■□□□ 1.44
ACER3-201ENST00000278544 PABPN1Q86U42 306 aaKnown RBP eCLIP24.01■■□□□ 1.43
ACER3-201ENST00000278544 MYO15BQ96JP2 1530 aa23.94■■□□□ 1.42
ACER3-201ENST00000278544 UNC13AQ9UPW8 1703 aa23.56■■□□□ 1.36
ACER3-201ENST00000278544 CECR2Q9BXF3 1484 aa23.49■■□□□ 1.35
ACER3-201ENST00000278544 BICRAQ9NZM4 1560 aa23.38■■□□□ 1.33
ACER3-201ENST00000278544 RSF1Q96T23 1441 aaPredicted RBP23.24■■□□□ 1.31
ACER3-201ENST00000278544 MROH2BQ7Z745 1585 aa23.22■■□□□ 1.31
ACER3-201ENST00000278544 WIZO95785 1651 aa23.03■■□□□ 1.28
ACER3-201ENST00000278544 BAZ1AQ9NRL2 1556 aaPredicted RBP22.98■■□□□ 1.27
ACER3-201ENST00000278544 SMARCA4P51532 1647 aa22.93■■□□□ 1.26
ACER3-201ENST00000278544 EIF4G1Q04637 1599 aaKnown RBP22.75■■□□□ 1.23
ACER3-201ENST00000278544 ATAD2BQ9ULI0 1458 aa22.68■■□□□ 1.22
ACER3-201ENST00000278544 CHIC1Q5VXU3 224 aa22.63■■□□□ 1.21
ACER3-201ENST00000278544 BAZ1BQ9UIG0 1483 aaKnown RBP22.61■■□□□ 1.21
ACER3-201ENST00000278544 DNAJC5BQ9UF47 199 aa22.58■■□□□ 1.21
ACER3-201ENST00000278544 TOP2AP11388 1531 aaKnown RBP22.54■■□□□ 1.2
ACER3-201ENST00000278544 CCDC88BA6NC98 1476 aa22.54■■□□□ 1.2
ACER3-201ENST00000278544 CC2D2AQ9P2K1 1620 aa22.51■■□□□ 1.19
ACER3-201ENST00000278544 SMARCA2P51531 1590 aa22.5■■□□□ 1.19
ACER3-201ENST00000278544 EHMT2Q96KQ7 1210 aa22.4■■□□□ 1.18
ACER3-201ENST00000278544 TRIM41Q8WV44 630 aa22.39■■□□□ 1.18
ACER3-201ENST00000278544 PEG3Q9GZU2 1588 aa22.39■■□□□ 1.17
ACER3-201ENST00000278544 FAM9AQ8IZU1 332 aaPredicted RBP22.38■■□□□ 1.17
ACER3-201ENST00000278544 NCAPD3P42695 1498 aa22.37■■□□□ 1.17
ACER3-201ENST00000278544 ABCC8Q09428 1581 aa22.2■■□□□ 1.14
ACER3-201ENST00000278544 HMGXB3Q12766 1538 aa22.2■■□□□ 1.14
ACER3-201ENST00000278544 LOC105371045A0A1W2PR82 267 aa22.1■■□□□ 1.13
ACER3-201ENST00000278544 NESP48681 1621 aa22.07■■□□□ 1.12
ACER3-201ENST00000278544 CADPSQ9ULU8 1353 aa21.97■■□□□ 1.11
ACER3-201ENST00000278544 WRNQ14191 1432 aaPredicted RBP eCLIP21.92■■□□□ 1.1
ACER3-201ENST00000278544 CFTRP13569 1480 aa21.9■■□□□ 1.1
ACER3-201ENST00000278544 SOGA1O94964 1423 aa21.79■■□□□ 1.08
ACER3-201ENST00000278544 SYNJ1O43426 1573 aa21.78■■□□□ 1.08
ACER3-201ENST00000278544 FANCD2Q9BXW9 1451 aa21.76■■□□□ 1.07
ACER3-201ENST00000278544 RUSC2Q8N2Y8 1516 aa21.75■■□□□ 1.07
ACER3-201ENST00000278544 RANGAP1P46060 587 aaPredicted RBP21.69■■□□□ 1.06
ACER3-201ENST00000278544 CUX1P39880 1505 aa21.66■■□□□ 1.06
ACER3-201ENST00000278544 PDS5BQ9NTI5 1447 aa21.61■■□□□ 1.05
ACER3-201ENST00000278544 CEP164Q9UPV0 1460 aa21.6■■□□□ 1.05
ACER3-201ENST00000278544 UBTFP17480 764 aaKnown RBP21.58■■□□□ 1.05
ACER3-201ENST00000278544 CSRNP3Q8WYN3 585 aa21.58■■□□□ 1.05
ACER3-201ENST00000278544 LAMC3Q9Y6N6 1575 aa21.57■■□□□ 1.04
ACER3-201ENST00000278544 ERCC6Q03468 1493 aa21.57■■□□□ 1.04
ACER3-201ENST00000278544 RAD54L2Q9Y4B4 1467 aa21.52■■□□□ 1.04
ACER3-201ENST00000278544 KIF21AQ7Z4S6 1674 aa21.52■■□□□ 1.04
ACER3-201ENST00000278544 TOP2BQ02880 1626 aa21.51■■□□□ 1.03
ACER3-201ENST00000278544 FGD5Q6ZNL6 1462 aa21.5■■□□□ 1.03
ACER3-201ENST00000278544 URB2Q14146 1524 aaKnown RBP21.48■■□□□ 1.03
ACER3-201ENST00000278544 TOPBP1Q92547 1522 aa21.46■■□□□ 1.03
ACER3-201ENST00000278544 PRDM2Q13029 1718 aa21.45■■□□□ 1.02
ACER3-201ENST00000278544 CUX2O14529 1486 aa21.44■■□□□ 1.02
ACER3-201ENST00000278544 TDRD9Q8NDG6 1382 aaKnown RBP21.43■■□□□ 1.02
ACER3-201ENST00000278544 BIVM-ERCC5R4GMW8 1640 aa21.39■■□□□ 1.01
ACER3-201ENST00000278544 POLA1P09884 1462 aaPredicted RBP21.39■■□□□ 1.01
ACER3-201ENST00000278544 PPARGC1BQ86YN6 1023 aaKnown RBP21.37■■□□□ 1.01
ACER3-201ENST00000278544 DNMBPQ6XZF7 1577 aa21.34■■□□□ 1.01
ACER3-201ENST00000278544 KIF27Q86VH2 1401 aa21.33■■□□□ 1.01
ACER3-201ENST00000278544 TTBK1Q5TCY1 1321 aaPredicted RBP21.33■■□□□ 1
ACER3-201ENST00000278544 MRC2Q9UBG0 1479 aa21.29■■□□□ 1
ACER3-201ENST00000278544 RAPGEF2Q9Y4G8 1499 aa21.27■■□□□ 1
ACER3-201ENST00000278544 EEA1Q15075 1411 aa21.24■□□□□ 0.99
ACER3-201ENST00000278544 AQRO60306 1485 aaKnown RBP eCLIP21.24■□□□□ 0.992e-12■■■■■ 32.2
ACER3-201ENST00000278544 IGF1RP08069 1367 aa21.22■□□□□ 0.99
ACER3-201ENST00000278544 FBLN2P98095 1184 aa21.21■□□□□ 0.99
ACER3-201ENST00000278544 ZNF608Q9ULD9 1512 aaPredicted RBP21.17■□□□□ 0.98
ACER3-201ENST00000278544 GOLGA3Q08378 1498 aa21.16■□□□□ 0.98
ACER3-201ENST00000278544 CARMIL1Q5VZK9 1371 aa21.15■□□□□ 0.98
ACER3-201ENST00000278544 P3H3Q8IVL6 736 aa21.15■□□□□ 0.98
ACER3-201ENST00000278544 ABCA10Q8WWZ4 1543 aa21.11■□□□□ 0.97
ACER3-201ENST00000278544 GAPVD1Q14C86 1478 aa21.1■□□□□ 0.97
ACER3-201ENST00000278544 CEP162Q5TB80 1403 aa21.1■□□□□ 0.97
ACER3-201ENST00000278544 WDR62O43379 1518 aa21.06■□□□□ 0.96
ACER3-201ENST00000278544 TNIKQ9UKE5 1360 aa21.06■□□□□ 0.96
ACER3-201ENST00000278544 THOC2Q8NI27 1593 aaKnown RBP21.05■□□□□ 0.96
ACER3-201ENST00000278544 PRXQ9BXM0 1461 aa21.05■□□□□ 0.96
ACER3-201ENST00000278544 TARBP1Q13395 1621 aaKnown RBP21.01■□□□□ 0.95
ACER3-201ENST00000278544 ATP1B4Q9UN42 357 aaPredicted RBP21■□□□□ 0.95
ACER3-201ENST00000278544 CLIP1P30622 1438 aa20.97■□□□□ 0.95
ACER3-201ENST00000278544 IFT140Q96RY7 1462 aa20.97■□□□□ 0.95
ACER3-201ENST00000278544 KIF21BO75037 1637 aa20.97■□□□□ 0.95
ACER3-201ENST00000278544 PCGF6Q9BYE7 350 aa20.97■□□□□ 0.95
ACER3-201ENST00000278544 CHMP7Q8WUX9 453 aaPredicted RBP20.95■□□□□ 0.94
ACER3-201ENST00000278544 WDR97A6NE52 1622 aa20.89■□□□□ 0.93
ACER3-201ENST00000278544 ABCA5Q8WWZ7 1642 aa20.88■□□□□ 0.93
ACER3-201ENST00000278544 SNAPC4Q5SXM2 1469 aa20.88■□□□□ 0.93
ACER3-201ENST00000278544 GRIN2BQ13224 1484 aa20.86■□□□□ 0.93
ACER3-201ENST00000278544 EIF4G3O43432 1585 aaKnown RBP20.85■□□□□ 0.93
ACER3-201ENST00000278544 ARID3CA6NKF2 412 aa20.85■□□□□ 0.93
ACER3-201ENST00000278544 ERICH3Q5RHP9 1530 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms