RNA–Protein interactions for RNA: ENST00000560417.5

MARK3-220, Transcript of microtubule affinity regulating kinase 3, humanhuman

TSL 3

Gene MARK3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MARK3-220ENST00000560417 AEBP2Q6ZN18 517 aaPredicted RBP25.4■■□□□ 1.66
MARK3-220ENST00000560417 CHIC1Q5VXU3 224 aa25.26■■□□□ 1.63
MARK3-220ENST00000560417 PHF23Q9BUL5 403 aaPredicted RBP22.3■■□□□ 1.16
MARK3-220ENST00000560417 SENP3Q9H4L4 574 aaPredicted RBP21.42■■□□□ 1.02
MARK3-220ENST00000560417 PLPPR3Q6T4P5 718 aa20.69■□□□□ 0.9
MARK3-220ENST00000560417 FOXD1Q16676 465 aa19.85■□□□□ 0.77
MARK3-220ENST00000560417 PPP6R1Q9UPN7 881 aa19.5■□□□□ 0.71
MARK3-220ENST00000560417 ADRA2BP18089 450 aa19.46■□□□□ 0.71
MARK3-220ENST00000560417 PIAS4Q8N2W9 510 aaPredicted RBP18.78■□□□□ 0.6
MARK3-220ENST00000560417 KCNA4P22459 653 aa18.43■□□□□ 0.54
MARK3-220ENST00000560417 PPP4R3CPQ6ZMV5 832 aa18.3■□□□□ 0.52
MARK3-220ENST00000560417 MSH5O43196 834 aa18.08■□□□□ 0.48
MARK3-220ENST00000560417 NCBP3Q53F19 620 aaKnown RBP17.91■□□□□ 0.46
MARK3-220ENST00000560417 SCAF1Q9H7N4 1312 aaKnown RBP17.76■□□□□ 0.43
MARK3-220ENST00000560417 NPM3O75607 178 aaKnown RBP17.71■□□□□ 0.43
MARK3-220ENST00000560417 CNKSR2Q8WXI2 1034 aa17.68■□□□□ 0.42
MARK3-220ENST00000560417 EHMT2Q96KQ7 1210 aa17.6■□□□□ 0.41
MARK3-220ENST00000560417 SLC4A1APQ9BWU0 796 aaKnown RBP17.59■□□□□ 0.41
MARK3-220ENST00000560417 MAPK8IP2Q13387 824 aaPredicted RBP17.52■□□□□ 0.4
MARK3-220ENST00000560417 CSRNP3Q8WYN3 585 aa17.29■□□□□ 0.36
MARK3-220ENST00000560417 RNF216Q9NWF9 866 aaPredicted RBP17.23■□□□□ 0.35
MARK3-220ENST00000560417 DNAJC5BQ9UF47 199 aa17.23■□□□□ 0.35
MARK3-220ENST00000560417 DMRT2Q9Y5R5 561 aa17.2■□□□□ 0.34
MARK3-220ENST00000560417 HOXD11P31277 338 aaPredicted RBP17.07■□□□□ 0.32
MARK3-220ENST00000560417 ZBTB22O15209 634 aa17■□□□□ 0.31
MARK3-220ENST00000560417 FOXD4L1Q9NU39 408 aa16.81■□□□□ 0.28
MARK3-220ENST00000560417 SLC4A2P04920 1241 aa16.64■□□□□ 0.25
MARK3-220ENST00000560417 MYCNP04198 464 aaPredicted RBP16.33■□□□□ 0.2
MARK3-220ENST00000560417 DCAF8L1A6NGE4 600 aa16.29■□□□□ 0.2
MARK3-220ENST00000560417 ATXN8OSP0DMR3 200 aa16.2■□□□□ 0.18
MARK3-220ENST00000560417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.15■□□□□ 0.181e-6■■■■□ 24.2
MARK3-220ENST00000560417 U3KPZ7 1027 aaPredicted RBP16.02■□□□□ 0.16
MARK3-220ENST00000560417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.93■□□□□ 0.14
MARK3-220ENST00000560417 HNRNPUL2Q1KMD3 747 aaKnown RBP15.93■□□□□ 0.14
MARK3-220ENST00000560417 SAMD1Q6SPF0 538 aaPredicted RBP15.91■□□□□ 0.14
MARK3-220ENST00000560417 ATF5Q9Y2D1 282 aaPredicted RBP15.9■□□□□ 0.14
MARK3-220ENST00000560417 POTEDQ86YR6 584 aa15.64■□□□□ 0.09
MARK3-220ENST00000560417 APLP2Q06481 763 aa15.62■□□□□ 0.09
MARK3-220ENST00000560417 RNF39Q9H2S5 420 aa15.58■□□□□ 0.08
MARK3-220ENST00000560417 ZNF219Q9P2Y4 722 aaPredicted RBP15.55■□□□□ 0.08
MARK3-220ENST00000560417 FKBP8Q14318 412 aa15.53■□□□□ 0.08
MARK3-220ENST00000560417 SPINK5Q9NQ38 1064 aaPredicted RBP15.42■□□□□ 0.06
MARK3-220ENST00000560417 C1QBPQ07021 282 aaKnown RBP15.4■□□□□ 0.06
MARK3-220ENST00000560417 TRHP20396 242 aaPredicted RBP15.31■□□□□ 0.04
MARK3-220ENST00000560417 CAPN15O75808 1086 aa15.26■□□□□ 0.03
MARK3-220ENST00000560417 MKRN4PQ13434 485 aaPredicted RBP15.24■□□□□ 0.03
MARK3-220ENST00000560417 POLA2Q14181 598 aa15.21■□□□□ 0.03
MARK3-220ENST00000560417 FBLN2P98095 1184 aa15.1■□□□□ 0.01
MARK3-220ENST00000560417 SPDYE4A6NLX3 237 aa15.06■□□□□ 0
MARK3-220ENST00000560417 ABCB7O75027 752 aa15.03■□□□□ -0
MARK3-220ENST00000560417 AMER1Q5JTC6 1135 aaPredicted RBP15.01□□□□□ -0.01
MARK3-220ENST00000560417 PROM2Q8N271 834 aa15□□□□□ -0.01
MARK3-220ENST00000560417 RTN4Q9NQC3 1192 aaKnown RBP15□□□□□ -0.01
MARK3-220ENST00000560417 DSG3P32926 999 aa14.99□□□□□ -0.01
MARK3-220ENST00000560417 ZBTB12Q9Y330 459 aaPredicted RBP14.98□□□□□ -0.01
MARK3-220ENST00000560417 FBXO3Q9UK99 471 aa14.84□□□□□ -0.03
MARK3-220ENST00000560417 CACNB1Q02641 598 aaPredicted RBP14.73□□□□□ -0.05
MARK3-220ENST00000560417 OSCARQ8IYS5 282 aa14.67□□□□□ -0.06
MARK3-220ENST00000560417 SPDYE2BA6NHP3 402 aa14.65□□□□□ -0.06
MARK3-220ENST00000560417 SPDYE6P0CI01 402 aa14.65□□□□□ -0.06
MARK3-220ENST00000560417 VASPP50552 380 aaPredicted RBP14.65□□□□□ -0.06
MARK3-220ENST00000560417 SPDYE2Q495Y8 402 aa14.65□□□□□ -0.06
MARK3-220ENST00000560417 ZNF692Q9BU19 519 aaPredicted RBP14.63□□□□□ -0.07
MARK3-220ENST00000560417 SSUH2Q9Y2M2 353 aa14.63□□□□□ -0.07
MARK3-220ENST00000560417 IFNLR1Q8IU57 520 aaPredicted RBP14.52□□□□□ -0.09
MARK3-220ENST00000560417 PABPN1Q86U42 306 aaKnown RBP eCLIP14.47□□□□□ -0.09
MARK3-220ENST00000560417 STAG3Q9UJ98 1225 aa14.42□□□□□ -0.1
MARK3-220ENST00000560417 SLC24A1O60721 1099 aa14.3□□□□□ -0.12
MARK3-220ENST00000560417 PKD2Q13563 968 aa14.23□□□□□ -0.13
MARK3-220ENST00000560417 PLCD3Q8N3E9 789 aa14.21□□□□□ -0.13
MARK3-220ENST00000560417 SPOCK2Q92563 424 aa14.21□□□□□ -0.13
MARK3-220ENST00000560417 RBM42Q9BTD8 480 aaKnown RBP14.21□□□□□ -0.13
MARK3-220ENST00000560417 KLHL34Q8N239 644 aa14.2□□□□□ -0.14
MARK3-220ENST00000560417 MIER1Q8N108 512 aa14.19□□□□□ -0.14
MARK3-220ENST00000560417 AKT1S1Q96B36 256 aa14.17□□□□□ -0.14
MARK3-220ENST00000560417 SPDYE1Q8NFV5 336 aaPredicted RBP14.08□□□□□ -0.16
MARK3-220ENST00000560417 PLEKHG5O94827 1062 aa14.05□□□□□ -0.16
MARK3-220ENST00000560417 ZBTB47Q9UFB7 747 aaPredicted RBP14.05□□□□□ -0.16
MARK3-220ENST00000560417 REM2Q8IYK8 340 aaPredicted RBP14.03□□□□□ -0.16
MARK3-220ENST00000560417 ECM2O94769 699 aaPredicted RBP13.98□□□□□ -0.17
MARK3-220ENST00000560417 CLEC11AQ9Y240 323 aa13.95□□□□□ -0.18
MARK3-220ENST00000560417 DCAF8L2P0C7V8 631 aa13.92□□□□□ -0.18
MARK3-220ENST00000560417 PRR29P0C7W0 189 aa13.92□□□□□ -0.18
MARK3-220ENST00000560417 CREBZFQ9NS37 354 aa13.91□□□□□ -0.18
MARK3-220ENST00000560417 PLCB2Q00722 1185 aa13.89□□□□□ -0.19
MARK3-220ENST00000560417 MNX1P50219 401 aaPredicted RBP13.88□□□□□ -0.19
MARK3-220ENST00000560417 RGL2O15211 777 aa13.87□□□□□ -0.19
MARK3-220ENST00000560417 NUBP1P53384 320 aa13.87□□□□□ -0.19
MARK3-220ENST00000560417 PITPNM1O00562 1244 aa13.86□□□□□ -0.19
MARK3-220ENST00000560417 CIZ1Q9ULV3 898 aaPredicted RBP13.86□□□□□ -0.19
MARK3-220ENST00000560417 TRIM41Q8WV44 630 aa13.82□□□□□ -0.2
MARK3-220ENST00000560417 NPM1P06748 294 aaKnown RBP eCLIP13.79□□□□□ -0.2
MARK3-220ENST00000560417 GSE1Q14687 1217 aa13.79□□□□□ -0.2
MARK3-220ENST00000560417 BBXQ8WY36 941 aaPredicted RBP13.74□□□□□ -0.21
MARK3-220ENST00000560417 DCAF8Q5TAQ9 597 aa13.69□□□□□ -0.22
MARK3-220ENST00000560417 RNF25Q96BH1 459 aaPredicted RBP13.69□□□□□ -0.22
MARK3-220ENST00000560417 RASEFQ8IZ41 740 aa13.67□□□□□ -0.22
MARK3-220ENST00000560417 FAM212AQ96EL1 285 aa13.67□□□□□ -0.22
MARK3-220ENST00000560417 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.64□□□□□ -0.23
MARK3-220ENST00000560417 CHRM1P11229 460 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms