RNA–Protein interactions for RNA: ENST00000368838.1

SNX27-201, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best) BASIC

Gene SNX27, Length 1,308 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-201ENST00000368838 NISCHQ9Y2I1 1504 aa21.13■□□□□ 0.97
SNX27-201ENST00000368838 CHIC1Q5VXU3 224 aa20.27■□□□□ 0.84
SNX27-201ENST00000368838 AEBP2Q6ZN18 517 aaPredicted RBP20.13■□□□□ 0.81
SNX27-201ENST00000368838 ABCC9O60706 1549 aa19.03■□□□□ 0.64
SNX27-201ENST00000368838 CCDC180Q9P1Z9 1646 aa19■□□□□ 0.63
SNX27-201ENST00000368838 RB1CC1Q8TDY2 1594 aa18.06■□□□□ 0.48
SNX27-201ENST00000368838 PHF23Q9BUL5 403 aaPredicted RBP18.06■□□□□ 0.48
SNX27-201ENST00000368838 DCAF8L2P0C7V8 631 aa17.92■□□□□ 0.46
SNX27-201ENST00000368838 NACADO15069 1562 aa17.89■□□□□ 0.45
SNX27-201ENST00000368838 UNC13AQ9UPW8 1703 aa17.86■□□□□ 0.45
SNX27-201ENST00000368838 DNAJC5BQ9UF47 199 aa17.83■□□□□ 0.44
SNX27-201ENST00000368838 PABPN1Q86U42 306 aaKnown RBP eCLIP17.72■□□□□ 0.43
SNX27-201ENST00000368838 BICRAQ9NZM4 1560 aa17.57■□□□□ 0.4
SNX27-201ENST00000368838 MYO15BQ96JP2 1530 aa17.55■□□□□ 0.4
SNX27-201ENST00000368838 ZCCHC6Q5VYS8 1495 aaKnown RBP17.5■□□□□ 0.39
SNX27-201ENST00000368838 SCRIBQ14160 1630 aa17.4■□□□□ 0.38
SNX27-201ENST00000368838 DCAF1Q9Y4B6 1507 aa17.36■□□□□ 0.37
SNX27-201ENST00000368838 CC2D2AQ9P2K1 1620 aa17.21■□□□□ 0.35
SNX27-201ENST00000368838 SHROOM4Q9ULL8 1493 aa17.16■□□□□ 0.34
SNX27-201ENST00000368838 EIF4G1Q04637 1599 aaKnown RBP17.13■□□□□ 0.33
SNX27-201ENST00000368838 CECR2Q9BXF3 1484 aa17.09■□□□□ 0.33
SNX27-201ENST00000368838 PLPPR3Q6T4P5 718 aa16.73■□□□□ 0.27
SNX27-201ENST00000368838 SENP3Q9H4L4 574 aaPredicted RBP16.7■□□□□ 0.26
SNX27-201ENST00000368838 SMARCA4P51532 1647 aa16.53■□□□□ 0.24
SNX27-201ENST00000368838 NCAPD3P42695 1498 aa16.49■□□□□ 0.23
SNX27-201ENST00000368838 ATAD2BQ9ULI0 1458 aa16.49■□□□□ 0.23
SNX27-201ENST00000368838 SMARCA2P51531 1590 aa16.43■□□□□ 0.22
SNX27-201ENST00000368838 HMGXB3Q12766 1538 aa16.4■□□□□ 0.22
SNX27-201ENST00000368838 ERCC6Q03468 1493 aa16.39■□□□□ 0.22
SNX27-201ENST00000368838 BAZ1AQ9NRL2 1556 aaPredicted RBP16.39■□□□□ 0.21
SNX27-201ENST00000368838 NESP48681 1621 aa16.37■□□□□ 0.21
SNX27-201ENST00000368838 BAZ1BQ9UIG0 1483 aaKnown RBP16.34■□□□□ 0.21
SNX27-201ENST00000368838 MROH2BQ7Z745 1585 aa16.33■□□□□ 0.2
SNX27-201ENST00000368838 DNAJC5Q9H3Z4 198 aa16.29■□□□□ 0.2
SNX27-201ENST00000368838 PEG3Q9GZU2 1588 aa16.29■□□□□ 0.2
SNX27-201ENST00000368838 CUX2O14529 1486 aa16.29■□□□□ 0.2
SNX27-201ENST00000368838 KIF21AQ7Z4S6 1674 aa16.24■□□□□ 0.19
SNX27-201ENST00000368838 WIZO95785 1651 aa16.22■□□□□ 0.19
SNX27-201ENST00000368838 THOC2Q8NI27 1593 aaKnown RBP16.19■□□□□ 0.18
SNX27-201ENST00000368838 LAMC3Q9Y6N6 1575 aa16.17■□□□□ 0.18
SNX27-201ENST00000368838 PDS5BQ9NTI5 1447 aa16.03■□□□□ 0.16
SNX27-201ENST00000368838 CADPSQ9ULU8 1353 aa16■□□□□ 0.15
SNX27-201ENST00000368838 MRC2Q9UBG0 1479 aa15.94■□□□□ 0.14
SNX27-201ENST00000368838 RSF1Q96T23 1441 aaPredicted RBP15.93■□□□□ 0.14
SNX27-201ENST00000368838 WDR62O43379 1518 aa15.91■□□□□ 0.14
SNX27-201ENST00000368838 TOP2AP11388 1531 aaKnown RBP15.9■□□□□ 0.14
SNX27-201ENST00000368838 CEP164Q9UPV0 1460 aa15.89■□□□□ 0.13
SNX27-201ENST00000368838 ADRA2BP18089 450 aa15.89■□□□□ 0.13
SNX27-201ENST00000368838 FANCD2Q9BXW9 1451 aa15.87■□□□□ 0.13
SNX27-201ENST00000368838 PRDM2Q13029 1718 aa15.87■□□□□ 0.13
SNX27-201ENST00000368838 CFTRP13569 1480 aa15.82■□□□□ 0.12
SNX27-201ENST00000368838 URB2Q14146 1524 aaKnown RBP15.77■□□□□ 0.11
SNX27-201ENST00000368838 CCDC88BA6NC98 1476 aa15.72■□□□□ 0.11
SNX27-201ENST00000368838 TRIM41Q8WV44 630 aa15.7■□□□□ 0.1
SNX27-201ENST00000368838 PPP6R1Q9UPN7 881 aa15.69■□□□□ 0.1
SNX27-201ENST00000368838 ZNF608Q9ULD9 1512 aaPredicted RBP15.59■□□□□ 0.09
SNX27-201ENST00000368838 TOPBP1Q92547 1522 aa15.58■□□□□ 0.09
SNX27-201ENST00000368838 KCNA4P22459 653 aa15.57■□□□□ 0.08
SNX27-201ENST00000368838 FOXD1Q16676 465 aa15.57■□□□□ 0.08
SNX27-201ENST00000368838 OSCARQ8IYS5 282 aa15.55■□□□□ 0.08
SNX27-201ENST00000368838 EIF4G3O43432 1585 aaKnown RBP15.53■□□□□ 0.08
SNX27-201ENST00000368838 IFT140Q96RY7 1462 aa15.53■□□□□ 0.08
SNX27-201ENST00000368838 DNMBPQ6XZF7 1577 aa15.53■□□□□ 0.08
SNX27-201ENST00000368838 CHD1O14646 1710 aa15.51■□□□□ 0.07
SNX27-201ENST00000368838 RIMBP3CA6NJZ7 1639 aa15.49■□□□□ 0.07
SNX27-201ENST00000368838 RIMBP3BA6NNM3 1639 aa15.49■□□□□ 0.07
SNX27-201ENST00000368838 RIMBP3Q9UFD9 1639 aa15.49■□□□□ 0.07
SNX27-201ENST00000368838 TARBP1Q13395 1621 aaKnown RBP15.48■□□□□ 0.07
SNX27-201ENST00000368838 ABCC8Q09428 1581 aa15.46■□□□□ 0.07
SNX27-201ENST00000368838 EHMT2Q96KQ7 1210 aa15.45■□□□□ 0.06
SNX27-201ENST00000368838 AQRO60306 1485 aaKnown RBP eCLIP15.44■□□□□ 0.06
SNX27-201ENST00000368838 POLA1P09884 1462 aaPredicted RBP15.41■□□□□ 0.06
SNX27-201ENST00000368838 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
SNX27-201ENST00000368838 ARHGEF11O15085 1522 aa15.37■□□□□ 0.05
SNX27-201ENST00000368838 FBLN2P98095 1184 aa15.35■□□□□ 0.05
SNX27-201ENST00000368838 FGD5Q6ZNL6 1462 aa15.35■□□□□ 0.05
SNX27-201ENST00000368838 SUPT5HO00267 1087 aaKnown RBP15.34■□□□□ 0.05
SNX27-201ENST00000368838 CUX1P39880 1505 aa15.33■□□□□ 0.05
SNX27-201ENST00000368838 TDRD9Q8NDG6 1382 aaKnown RBP15.33■□□□□ 0.04
SNX27-201ENST00000368838 SOGA1O94964 1423 aa15.33■□□□□ 0.04
SNX27-201ENST00000368838 WDR97A6NE52 1622 aa15.3■□□□□ 0.04
SNX27-201ENST00000368838 PBRM1Q86U86 1689 aa15.29■□□□□ 0.04
SNX27-201ENST00000368838 SNAPC4Q5SXM2 1469 aa15.27■□□□□ 0.04
SNX27-201ENST00000368838 CYB5RLQ6IPT4 315 aa15.26■□□□□ 0.03
SNX27-201ENST00000368838 ARAP1Q96P48 1450 aa15.22■□□□□ 0.03
SNX27-201ENST00000368838 POTEDQ86YR6 584 aa15.21■□□□□ 0.03
SNX27-201ENST00000368838 CLASP1Q7Z460 1538 aa15.19■□□□□ 0.02
SNX27-201ENST00000368838 GRIN2BQ13224 1484 aa15.18■□□□□ 0.02
SNX27-201ENST00000368838 CHMP7Q8WUX9 453 aaPredicted RBP15.17■□□□□ 0.02
SNX27-201ENST00000368838 SYNJ1O43426 1573 aa15.17■□□□□ 0.02
SNX27-201ENST00000368838 MAGI1Q96QZ7 1491 aaPredicted RBP15.17■□□□□ 0.02
SNX27-201ENST00000368838 ABCA5Q8WWZ7 1642 aa15.17■□□□□ 0.02
SNX27-201ENST00000368838 GAPVD1Q14C86 1478 aa15.15■□□□□ 0.02
SNX27-201ENST00000368838 SYNJ2O15056 1496 aa15.13■□□□□ 0.01
SNX27-201ENST00000368838 BIVM-ERCC5R4GMW8 1640 aa15.12■□□□□ 0.01
SNX27-201ENST00000368838 ABCA10Q8WWZ4 1543 aa15.11■□□□□ 0.01
SNX27-201ENST00000368838 TRHP20396 242 aaPredicted RBP15.11■□□□□ 0.01
SNX27-201ENST00000368838 TOP2BQ02880 1626 aa15.09■□□□□ 0.01
SNX27-201ENST00000368838 ADAMTS12P58397 1594 aa15.05■□□□□ -0
SNX27-201ENST00000368838 WRNQ14191 1432 aaPredicted RBP eCLIP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms