RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 AEBP2Q6ZN18 517 aaPredicted RBP28.3■■■□□ 2.12
VRK1-206ENST00000557222 CHIC1Q5VXU3 224 aa27.23■■□□□ 1.95
VRK1-206ENST00000557222 SENP3Q9H4L4 574 aaPredicted RBP24.06■■□□□ 1.44
VRK1-206ENST00000557222 PHF23Q9BUL5 403 aaPredicted RBP23.92■■□□□ 1.42
VRK1-206ENST00000557222 FOXD1Q16676 465 aa22.4■■□□□ 1.18
VRK1-206ENST00000557222 PLPPR3Q6T4P5 718 aa21.91■■□□□ 1.1
VRK1-206ENST00000557222 NISCHQ9Y2I1 1504 aa21.78■■□□□ 1.08
VRK1-206ENST00000557222 PPP6R1Q9UPN7 881 aa21.24■□□□□ 0.99
VRK1-206ENST00000557222 ADRA2BP18089 450 aa21.19■□□□□ 0.98
VRK1-206ENST00000557222 PIAS4Q8N2W9 510 aaPredicted RBP21.01■□□□□ 0.95
VRK1-206ENST00000557222 MSH5O43196 834 aa20.8■□□□□ 0.92
VRK1-206ENST00000557222 POTEDQ86YR6 584 aa19.69■□□□□ 0.74
VRK1-206ENST00000557222 ABCC9O60706 1549 aa19.58■□□□□ 0.73
VRK1-206ENST00000557222 CCDC180Q9P1Z9 1646 aa19.58■□□□□ 0.72
VRK1-206ENST00000557222 SCAF1Q9H7N4 1312 aaKnown RBP19.36■□□□□ 0.69
VRK1-206ENST00000557222 MAPK8IP2Q13387 824 aaPredicted RBP19.36■□□□□ 0.69
VRK1-206ENST00000557222 PPP4R3CPQ6ZMV5 832 aa19.27■□□□□ 0.68
VRK1-206ENST00000557222 DMRT2Q9Y5R5 561 aa19.15■□□□□ 0.66
VRK1-206ENST00000557222 CNKSR2Q8WXI2 1034 aa18.81■□□□□ 0.6
VRK1-206ENST00000557222 RB1CC1Q8TDY2 1594 aa18.68■□□□□ 0.58
VRK1-206ENST00000557222 NCBP3Q53F19 620 aaKnown RBP18.62■□□□□ 0.57
VRK1-206ENST00000557222 HOXD11P31277 338 aaPredicted RBP18.59■□□□□ 0.57
VRK1-206ENST00000557222 NACADO15069 1562 aa18.56■□□□□ 0.56
VRK1-206ENST00000557222 RNF216Q9NWF9 866 aaPredicted RBP18.55■□□□□ 0.56
VRK1-206ENST00000557222 DNAJC5BQ9UF47 199 aa18.48■□□□□ 0.55
VRK1-206ENST00000557222 NPM3O75607 178 aaKnown RBP18.37■□□□□ 0.53
VRK1-206ENST00000557222 KCNA4P22459 653 aa18.36■□□□□ 0.53
VRK1-206ENST00000557222 DCAF8L2P0C7V8 631 aa18.35■□□□□ 0.53
VRK1-206ENST00000557222 MYO15BQ96JP2 1530 aa18.34■□□□□ 0.53
VRK1-206ENST00000557222 DCAF8L1A6NGE4 600 aa18.33■□□□□ 0.52
VRK1-206ENST00000557222 PABPN1Q86U42 306 aaKnown RBP eCLIP18.23■□□□□ 0.51
VRK1-206ENST00000557222 UNC13AQ9UPW8 1703 aa18.16■□□□□ 0.5
VRK1-206ENST00000557222 BICRAQ9NZM4 1560 aa18.1■□□□□ 0.49
VRK1-206ENST00000557222 DCAF1Q9Y4B6 1507 aa18.05■□□□□ 0.48
VRK1-206ENST00000557222 ZCCHC6Q5VYS8 1495 aaKnown RBP18.02■□□□□ 0.48
VRK1-206ENST00000557222 SHROOM4Q9ULL8 1493 aa17.98■□□□□ 0.47
VRK1-206ENST00000557222 RNF39Q9H2S5 420 aa17.79■□□□□ 0.44
VRK1-206ENST00000557222 SCRIBQ14160 1630 aa17.74■□□□□ 0.43
VRK1-206ENST00000557222 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.71■□□□□ 0.43
VRK1-206ENST00000557222 CC2D2AQ9P2K1 1620 aa17.71■□□□□ 0.43
VRK1-206ENST00000557222 CECR2Q9BXF3 1484 aa17.7■□□□□ 0.42
VRK1-206ENST00000557222 EIF4G1Q04637 1599 aaKnown RBP17.67■□□□□ 0.42
VRK1-206ENST00000557222 CACNB1Q02641 598 aaPredicted RBP17.62■□□□□ 0.41
VRK1-206ENST00000557222 C1QBPQ07021 282 aaKnown RBP17.55■□□□□ 0.4
VRK1-206ENST00000557222 SLC4A2P04920 1241 aa17.46■□□□□ 0.39
VRK1-206ENST00000557222 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
VRK1-206ENST00000557222 U3KPZ7 1027 aaPredicted RBP17.39■□□□□ 0.37
VRK1-206ENST00000557222 NCAPD3P42695 1498 aa17.16■□□□□ 0.34
VRK1-206ENST00000557222 DNAJC5Q9H3Z4 198 aa17.11■□□□□ 0.33
VRK1-206ENST00000557222 ATAD2BQ9ULI0 1458 aa17.05■□□□□ 0.32
VRK1-206ENST00000557222 SPINK5Q9NQ38 1064 aaPredicted RBP17.03■□□□□ 0.32
VRK1-206ENST00000557222 CUX2O14529 1486 aa17.02■□□□□ 0.32
VRK1-206ENST00000557222 SMARCA2P51531 1590 aa17.02■□□□□ 0.31
VRK1-206ENST00000557222 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17■□□□□ 0.31
VRK1-206ENST00000557222 HNRNPUL2Q1KMD3 747 aaKnown RBP17■□□□□ 0.31
VRK1-206ENST00000557222 FOXD4L1Q9NU39 408 aa17■□□□□ 0.31
VRK1-206ENST00000557222 HMGXB3Q12766 1538 aa16.99■□□□□ 0.31
VRK1-206ENST00000557222 SMARCA4P51532 1647 aa16.97■□□□□ 0.31
VRK1-206ENST00000557222 CAPN15O75808 1086 aa16.97■□□□□ 0.31
VRK1-206ENST00000557222 MYCNP04198 464 aaPredicted RBP16.97■□□□□ 0.31
VRK1-206ENST00000557222 ERCC6Q03468 1493 aa16.95■□□□□ 0.3
VRK1-206ENST00000557222 SAMD1Q6SPF0 538 aaPredicted RBP16.93■□□□□ 0.3
VRK1-206ENST00000557222 BAZ1AQ9NRL2 1556 aaPredicted RBP16.91■□□□□ 0.3
VRK1-206ENST00000557222 APLP2Q06481 763 aa16.91■□□□□ 0.3
VRK1-206ENST00000557222 ZBTB22O15209 634 aa16.89■□□□□ 0.29
VRK1-206ENST00000557222 PEG3Q9GZU2 1588 aa16.87■□□□□ 0.29
VRK1-206ENST00000557222 BAZ1BQ9UIG0 1483 aaKnown RBP16.86■□□□□ 0.29
VRK1-206ENST00000557222 NESP48681 1621 aa16.79■□□□□ 0.28
VRK1-206ENST00000557222 TRHP20396 242 aaPredicted RBP16.79■□□□□ 0.28
VRK1-206ENST00000557222 DSG3P32926 999 aa16.79■□□□□ 0.28
VRK1-206ENST00000557222 ZNF219Q9P2Y4 722 aaPredicted RBP16.76■□□□□ 0.27
VRK1-206ENST00000557222 LAMC3Q9Y6N6 1575 aa16.75■□□□□ 0.27
VRK1-206ENST00000557222 MROH2BQ7Z745 1585 aa16.73■□□□□ 0.27
VRK1-206ENST00000557222 PDS5BQ9NTI5 1447 aa16.69■□□□□ 0.26
VRK1-206ENST00000557222 THOC2Q8NI27 1593 aaKnown RBP16.66■□□□□ 0.26
VRK1-206ENST00000557222 CADPSQ9ULU8 1353 aa16.62■□□□□ 0.25
VRK1-206ENST00000557222 ABCB7O75027 752 aa16.61■□□□□ 0.25
VRK1-206ENST00000557222 ATF5Q9Y2D1 282 aaPredicted RBP16.57■□□□□ 0.24
VRK1-206ENST00000557222 KIF21AQ7Z4S6 1674 aa16.56■□□□□ 0.24
VRK1-206ENST00000557222 MRC2Q9UBG0 1479 aa16.5■□□□□ 0.23
VRK1-206ENST00000557222 WIZO95785 1651 aa16.49■□□□□ 0.23
VRK1-206ENST00000557222 WDR62O43379 1518 aa16.45■□□□□ 0.22
VRK1-206ENST00000557222 CSRNP3Q8WYN3 585 aa16.45■□□□□ 0.22
VRK1-206ENST00000557222 ATXN8OSP0DMR3 200 aa16.44■□□□□ 0.22
VRK1-206ENST00000557222 POLA2Q14181 598 aa16.43■□□□□ 0.22
VRK1-206ENST00000557222 EHMT2Q96KQ7 1210 aa16.42■□□□□ 0.22
VRK1-206ENST00000557222 CEP164Q9UPV0 1460 aa16.41■□□□□ 0.22
VRK1-206ENST00000557222 RSF1Q96T23 1441 aaPredicted RBP16.4■□□□□ 0.22
VRK1-206ENST00000557222 CFTRP13569 1480 aa16.4■□□□□ 0.22
VRK1-206ENST00000557222 FANCD2Q9BXW9 1451 aa16.38■□□□□ 0.21
VRK1-206ENST00000557222 TOP2AP11388 1531 aaKnown RBP16.34■□□□□ 0.21
VRK1-206ENST00000557222 OSCARQ8IYS5 282 aa16.24■□□□□ 0.19
VRK1-206ENST00000557222 URB2Q14146 1524 aaKnown RBP16.24■□□□□ 0.19
VRK1-206ENST00000557222 TRIM41Q8WV44 630 aa16.21■□□□□ 0.19
VRK1-206ENST00000557222 PRDM2Q13029 1718 aa16.16■□□□□ 0.18
VRK1-206ENST00000557222 CCDC88BA6NC98 1476 aa16.16■□□□□ 0.18
VRK1-206ENST00000557222 IFT140Q96RY7 1462 aa16.12■□□□□ 0.17
VRK1-206ENST00000557222 ABCC8Q09428 1581 aa16.11■□□□□ 0.17
VRK1-206ENST00000557222 ZBTB12Q9Y330 459 aaPredicted RBP16.1■□□□□ 0.17
VRK1-206ENST00000557222 TOPBP1Q92547 1522 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms