RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 DCAF8L2P0C7V8 631 aa31.89■■■□□ 2.7
SNX27-202ENST00000368841 EHMT2Q96KQ7 1210 aa30.12■■■□□ 2.41
SNX27-202ENST00000368841 SUPT5HO00267 1087 aaKnown RBP29.99■■■□□ 2.39
SNX27-202ENST00000368841 SHROOM4Q9ULL8 1493 aa29.5■■■□□ 2.31
SNX27-202ENST00000368841 TTBK1Q5TCY1 1321 aaPredicted RBP29.03■■■□□ 2.24
SNX27-202ENST00000368841 PELP1Q8IZL8 1130 aaKnown RBP28.71■■■□□ 2.19
SNX27-202ENST00000368841 FAM9AQ8IZU1 332 aaPredicted RBP28.61■■■□□ 2.17
SNX27-202ENST00000368841 APLP2Q06481 763 aa28.57■■■□□ 2.16
SNX27-202ENST00000368841 RANGAP1P46060 587 aaPredicted RBP28.56■■■□□ 2.16
SNX27-202ENST00000368841 PCGF6Q9BYE7 350 aa28.21■■■□□ 2.11
SNX27-202ENST00000368841 ATP1B4Q9UN42 357 aaPredicted RBP28.16■■■□□ 2.1
SNX27-202ENST00000368841 ERICH6Q7L0X2 663 aa28.12■■■□□ 2.09
SNX27-202ENST00000368841 NISCHQ9Y2I1 1504 aa28.04■■■□□ 2.08
SNX27-202ENST00000368841 YTHDC1Q96MU7 727 aaKnown RBP27.76■■■□□ 2.04
SNX27-202ENST00000368841 CCER1Q8TC90 406 aaPredicted RBP27.71■■■□□ 2.03
SNX27-202ENST00000368841 PPARGC1BQ86YN6 1023 aaKnown RBP27.58■■■□□ 2.01
SNX27-202ENST00000368841 CENPBP07199 599 aaPredicted RBP27.52■■■□□ 2
SNX27-202ENST00000368841 UBTFP17480 764 aaKnown RBP27.41■■□□□ 1.98
SNX27-202ENST00000368841 TRIM41Q8WV44 630 aa27.4■■□□□ 1.98
SNX27-202ENST00000368841 MYT1Q01538 1121 aa27.34■■□□□ 1.97
SNX27-202ENST00000368841 NEFLP07196 543 aa27.24■■□□□ 1.95
SNX27-202ENST00000368841 CNGB1Q14028 1251 aaPredicted RBP27.23■■□□□ 1.95
SNX27-202ENST00000368841 POLR3GLQ9BT43 218 aa27.21■■□□□ 1.95
SNX27-202ENST00000368841 CHIC1Q5VXU3 224 aa27.16■■□□□ 1.94
SNX27-202ENST00000368841 MYT1LQ9UL68 1186 aa27.15■■□□□ 1.94
SNX27-202ENST00000368841 ITGAEP38570 1179 aa27.06■■□□□ 1.92
SNX27-202ENST00000368841 ZEB1P37275 1124 aaPredicted RBP27.03■■□□□ 1.92
SNX27-202ENST00000368841 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.9■■□□□ 1.9
SNX27-202ENST00000368841 HNRNPUL2Q1KMD3 747 aaKnown RBP26.9■■□□□ 1.9
SNX27-202ENST00000368841 SLC4A1APQ9BWU0 796 aaKnown RBP26.76■■□□□ 1.87
SNX27-202ENST00000368841 DAXXQ9UER7 740 aaPredicted RBP26.76■■□□□ 1.87
SNX27-202ENST00000368841 LOC105371045A0A1W2PR82 267 aa26.39■■□□□ 1.81
SNX27-202ENST00000368841 TRIM26Q12899 539 aaPredicted RBP26.33■■□□□ 1.81
SNX27-202ENST00000368841 HRCP23327 699 aa26.27■■□□□ 1.8
SNX27-202ENST00000368841 CLSPNQ9HAW4 1339 aa26.25■■□□□ 1.79
SNX27-202ENST00000368841 BCL11AQ9H165 835 aa26.21■■□□□ 1.79
SNX27-202ENST00000368841 ZNF316A6NFI3 1004 aaPredicted RBP26.2■■□□□ 1.78
SNX27-202ENST00000368841 BCANQ96GW7 911 aa26.08■■□□□ 1.76
SNX27-202ENST00000368841 FAM50AQ14320 339 aaKnown RBP26.06■■□□□ 1.76
SNX27-202ENST00000368841 NEUROD1Q13562 356 aa26.01■■□□□ 1.75
SNX27-202ENST00000368841 SLC24A1O60721 1099 aa26■■□□□ 1.75
SNX27-202ENST00000368841 TRIM52Q96A61 297 aa25.98■■□□□ 1.75
SNX27-202ENST00000368841 RTL5Q5HYW3 569 aaPredicted RBP25.95■■□□□ 1.74
SNX27-202ENST00000368841 ZNF326Q5BKZ1 582 aaKnown RBP25.94■■□□□ 1.74
SNX27-202ENST00000368841 DIEXFQ68CQ4 756 aaKnown RBP25.82■■□□□ 1.72
SNX27-202ENST00000368841 ARID3CA6NKF2 412 aa25.69■■□□□ 1.7
SNX27-202ENST00000368841 FBLN2P98095 1184 aa25.66■■□□□ 1.7
SNX27-202ENST00000368841 PABPN1Q86U42 306 aaKnown RBP eCLIP25.6■■□□□ 1.69
SNX27-202ENST00000368841 PLPPR3Q6T4P5 718 aa25.57■■□□□ 1.68
SNX27-202ENST00000368841 ZBTB47Q9UFB7 747 aaPredicted RBP25.56■■□□□ 1.68
SNX27-202ENST00000368841 CANXP27824 592 aaKnown RBP25.55■■□□□ 1.68
SNX27-202ENST00000368841 GTF3C3Q9Y5Q9 886 aa25.46■■□□□ 1.67
SNX27-202ENST00000368841 P3H3Q8IVL6 736 aa25.41■■□□□ 1.66
SNX27-202ENST00000368841 ANP32CO43423 234 aa25.41■■□□□ 1.66
SNX27-202ENST00000368841 NPM2Q86SE8 214 aaKnown RBP25.38■■□□□ 1.65
SNX27-202ENST00000368841 CDK11AQ9UQ88 783 aaPredicted RBP25.36■■□□□ 1.65
SNX27-202ENST00000368841 ZNF777Q9ULD5 760 aaPredicted RBP25.26■■□□□ 1.63
SNX27-202ENST00000368841 ABCC9O60706 1549 aa25.16■■□□□ 1.62
SNX27-202ENST00000368841 NEFMP07197 916 aa25.14■■□□□ 1.62
SNX27-202ENST00000368841 SALL2Q9Y467 1007 aaPredicted RBP25.09■■□□□ 1.61
SNX27-202ENST00000368841 CHGAP10645 457 aaKnown RBP25.08■■□□□ 1.61
SNX27-202ENST00000368841 SENP3Q9H4L4 574 aaPredicted RBP25.08■■□□□ 1.61
SNX27-202ENST00000368841 ARXQ96QS3 562 aa25■■□□□ 1.59
SNX27-202ENST00000368841 PLEKHG5O94827 1062 aa24.99■■□□□ 1.59
SNX27-202ENST00000368841 ANP32AP39687 249 aaKnown RBP24.96■■□□□ 1.59
SNX27-202ENST00000368841 EIF5BO60841 1220 aaKnown RBP24.94■■□□□ 1.58
SNX27-202ENST00000368841 STAG3Q9UJ98 1225 aa24.93■■□□□ 1.58
SNX27-202ENST00000368841 SCAF1Q9H7N4 1312 aaKnown RBP24.9■■□□□ 1.58
SNX27-202ENST00000368841 HSP90AA1P07900 732 aaKnown RBP24.89■■□□□ 1.58
SNX27-202ENST00000368841 A0A0G2JS52 829 aa24.87■■□□□ 1.57
SNX27-202ENST00000368841 ESF1Q9H501 851 aaKnown RBP24.87■■□□□ 1.57
SNX27-202ENST00000368841 FKBP8Q14318 412 aa24.85■■□□□ 1.57
SNX27-202ENST00000368841 FAM9BQ8IZU0 186 aa24.85■■□□□ 1.57
SNX27-202ENST00000368841 ZBTB7CA1YPR0 619 aa24.78■■□□□ 1.56
SNX27-202ENST00000368841 NBR1Q14596 966 aa24.77■■□□□ 1.56
SNX27-202ENST00000368841 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.77■■□□□ 1.56
SNX27-202ENST00000368841 HNRNPUQ00839 825 aaKnown RBP eCLIP24.69■■□□□ 1.54
SNX27-202ENST00000368841 ANP32BQ92688 251 aaKnown RBP24.68■■□□□ 1.54
SNX27-202ENST00000368841 ACIN1Q9UKV3 1341 aaKnown RBP24.68■■□□□ 1.54
SNX27-202ENST00000368841 CHIC2Q9UKJ5 165 aa24.67■■□□□ 1.54
SNX27-202ENST00000368841 IRX6P78412 446 aaPredicted RBP24.66■■□□□ 1.54
SNX27-202ENST00000368841 SENP3-EIF4A1A0A087X0R7 540 aa24.65■■□□□ 1.54
SNX27-202ENST00000368841 DDX10Q13206 875 aaKnown RBP24.65■■□□□ 1.54
SNX27-202ENST00000368841 KDM2AQ9Y2K7 1162 aa24.61■■□□□ 1.53
SNX27-202ENST00000368841 HIRIP3Q9BW71 556 aaPredicted RBP24.59■■□□□ 1.53
SNX27-202ENST00000368841 TONSLQ96HA7 1378 aa24.55■■□□□ 1.52
SNX27-202ENST00000368841 UPF2Q9HAU5 1272 aaKnown RBP24.54■■□□□ 1.52
SNX27-202ENST00000368841 TPRNQ4KMQ1 711 aa24.51■■□□□ 1.51
SNX27-202ENST00000368841 C14orf37Q86TY3 774 aa24.5■■□□□ 1.51
SNX27-202ENST00000368841 TULP1O00294 542 aaPredicted RBP24.46■■□□□ 1.51
SNX27-202ENST00000368841 TMC1Q8TDI8 760 aa24.42■■□□□ 1.5
SNX27-202ENST00000368841 CCDC136Q96JN2 1154 aa24.42■■□□□ 1.5
SNX27-202ENST00000368841 WDR43Q15061 677 aaKnown RBP eCLIP24.42■■□□□ 1.5
SNX27-202ENST00000368841 CSRNP3Q8WYN3 585 aa24.41■■□□□ 1.5
SNX27-202ENST00000368841 NPM1P06748 294 aaKnown RBP eCLIP24.37■■□□□ 1.49
SNX27-202ENST00000368841 TAOK2Q9UL54 1235 aa24.35■■□□□ 1.49
SNX27-202ENST00000368841 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.28■■□□□ 1.48
SNX27-202ENST00000368841 MRS2Q9HD23 443 aa24.27■■□□□ 1.48
SNX27-202ENST00000368841 SCRIBQ14160 1630 aa24.24■■□□□ 1.47
SNX27-202ENST00000368841 CDK11BP21127 795 aaKnown RBP24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms