Protein–RNA interactions for Protein: Q7KZF4

SND1, Staphylococcal nuclease domain-containing protein 1, humanhuman

Known RBP eCLIP

Length 910 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1Q7KZF4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.113e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-220ENST00000505307 743 ntTSL 520.58■□□□□ 0.893e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-215ENST00000503418 662 ntTSL 420.03■□□□□ 0.83e-6■□□□□ 8.1
SND1Q7KZF4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.84■□□□□ 0.453e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-213ENST00000502690 599 ntTSL 417.53■□□□□ 0.43e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.253e-6■□□□□ 8.1
SND1Q7KZF4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.53■□□□□ 0.243e-6■□□□□ 8.1
SND1Q7KZF4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.143e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.13e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-228ENST00000508974 568 ntTSL 415.27■□□□□ 0.043e-6■□□□□ 8.1
SND1Q7KZF4 GABARAP-202ENST00000570856 583 ntTSL 214.04□□□□□ -0.163e-6■□□□□ 8.1
SND1Q7KZF4 ITGA5-203ENST00000547197 757 ntTSL 314.02□□□□□ -0.173e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC13.98□□□□□ -0.173e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-209ENST00000394804 4166 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.333e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-231ENST00000513098 702 ntTSL 312.92□□□□□ -0.343e-6■□□□□ 8.1
SND1Q7KZF4 AC120057.3-201ENST00000570760 776 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.423e-6■□□□□ 8.1
SND1Q7KZF4 GABARAP-206ENST00000577035 762 ntTSL 2 BASIC12.37□□□□□ -0.433e-6■□□□□ 8.1
SND1Q7KZF4 GABARAP-203ENST00000571129 568 ntTSL 2 BASIC12.36□□□□□ -0.433e-6■□□□□ 8.1
SND1Q7KZF4 ITGA5-209ENST00000552387 1333 ntTSL 211.86□□□□□ -0.513e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-211ENST00000502404 574 ntTSL 4 BASIC11.51□□□□□ -0.573e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-219ENST00000505207 527 ntTSL 5 BASIC11.51□□□□□ -0.573e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-232ENST00000514755 593 ntTSL 411.35□□□□□ -0.593e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-212ENST00000502563 680 ntTSL 311.13□□□□□ -0.633e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-208ENST00000394803 2227 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.633e-6■□□□□ 8.1
SND1Q7KZF4 IQGAP1-211ENST00000560373 350 ntTSL 210.97□□□□□ -0.653e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-203ENST00000343106 2389 ntAPPRIS P4 TSL 2 BASIC10.95□□□□□ -0.663e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-202ENST00000338145 896 ntAPPRIS ALT1 TSL 5 BASIC10.82□□□□□ -0.683e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC10.74□□□□□ -0.693e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-206ENST00000357194 660 ntTSL 2 BASIC10.6□□□□□ -0.713e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-227ENST00000508818 584 ntTSL 210.43□□□□□ -0.743e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC10.38□□□□□ -0.753e-6■□□□□ 8.1
SND1Q7KZF4 ITGA5-210ENST00000552431 588 ntTSL 310.18□□□□□ -0.783e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-223ENST00000508249 604 ntTSL 49.48□□□□□ -0.893e-6■□□□□ 8.1
SND1Q7KZF4 ITGA5-205ENST00000549601 505 ntTSL 29.41□□□□□ -0.93e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-205ENST00000350435 711 ntTSL 2 BASIC9.39□□□□□ -0.913e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-225ENST00000508476 601 ntTSL 38.65□□□□□ -1.023e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-222ENST00000508238 547 ntTSL 48.17□□□□□ -1.13e-6■□□□□ 8.1
SND1Q7KZF4 IQGAP1-213ENST00000560733 565 ntTSL 27.28□□□□□ -1.243e-8■□□□□ 8.1
SND1Q7KZF4 UBE2D3-226ENST00000508635 587 ntTSL 45.51□□□□□ -1.533e-6■□□□□ 8.1
SND1Q7KZF4 SLC16A3-205ENST00000578574 958 ntTSL 224.55■■□□□ 1.522e-12■□□□□ 8.1
SND1Q7KZF4 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.751e-6■□□□□ 8.1
SND1Q7KZF4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.44■□□□□ 0.381e-6■□□□□ 8.1
SND1Q7KZF4 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC14.14□□□□□ -0.151e-6■□□□□ 8.1
SND1Q7KZF4 PEG10-204ENST00000493935 763 ntTSL 412.75□□□□□ -0.374e-7■□□□□ 8.1
SND1Q7KZF4 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC10.44□□□□□ -0.744e-7■□□□□ 8.1
SND1Q7KZF4 PEG10-206ENST00000612941 6392 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.844e-7■□□□□ 8.1
SND1Q7KZF4 PEG10-209ENST00000617526 6392 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.844e-7■□□□□ 8.1
SND1Q7KZF4 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC9.37□□□□□ -0.914e-7■□□□□ 8.1
SND1Q7KZF4 PEG10-201ENST00000465184 788 ntTSL 36.57□□□□□ -1.364e-7■□□□□ 8.1
SND1Q7KZF4 FUS-209ENST00000566605 1787 ntTSL 1 (best)27.48■■□□□ 1.995e-7■□□□□ 8.1
SND1Q7KZF4 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.685e-7■□□□□ 8.1
SND1Q7KZF4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.325e-7■□□□□ 8.1
SND1Q7KZF4 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.262e-6■□□□□ 8.1
SND1Q7KZF4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.252e-9■□□□□ 8.1
SND1Q7KZF4 MTA2-206ENST00000531261 563 ntTSL 422.69■■□□□ 1.222e-6■□□□□ 8.1
SND1Q7KZF4 YIF1A-207ENST00000484814 541 ntTSL 321.77■■□□□ 1.082e-6■□□□□ 8.1
SND1Q7KZF4 SQSTM1-215ENST00000514093 842 ntTSL 521.08■□□□□ 0.973e-8■□□□□ 8.1
SND1Q7KZF4 ATP5D-204ENST00000589478 640 ntTSL 220.26■□□□□ 0.833e-8■□□□□ 8.1
SND1Q7KZF4 PSMB5-201ENST00000334454 796 ntTSL 519.88■□□□□ 0.775e-7■□□□□ 8.1
SND1Q7KZF4 SEC63-203ENST00000446496 583 ntTSL 419.42■□□□□ 0.72e-6■□□□□ 8.1
SND1Q7KZF4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.622e-6■□□□□ 8.1
SND1Q7KZF4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.93■□□□□ 0.622e-6■□□□□ 8.1
SND1Q7KZF4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.93■□□□□ 0.622e-6■□□□□ 8.1
SND1Q7KZF4 CTSH-206ENST00000528436 268 ntTSL 318.78■□□□□ 0.62e-6■□□□□ 8.1
SND1Q7KZF4 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.52■□□□□ 0.552e-6■□□□□ 8.1
SND1Q7KZF4 SQSTM1-212ENST00000508284 578 ntTSL 418.51■□□□□ 0.553e-8■□□□□ 8.1
SND1Q7KZF4 IMPDH2-206ENST00000466147 691 ntTSL 218.27■□□□□ 0.522e-6■□□□□ 8.1
SND1Q7KZF4 RPS17-210ENST00000561440 1922 ntTSL 218.27■□□□□ 0.514e-32■□□□□ 8.1
SND1Q7KZF4 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.432e-9■□□□□ 8.1
SND1Q7KZF4 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.365e-7■□□□□ 8.1
SND1Q7KZF4 UBC-208ENST00000540700 627 ntTSL 217.25■□□□□ 0.352e-6■□□□□ 8.1
SND1Q7KZF4 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.352e-6■□□□□ 8.1
SND1Q7KZF4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.344e-32■□□□□ 8.1
SND1Q7KZF4 DGUOK-203ENST00000418996 703 ntTSL 1 (best)17.1■□□□□ 0.332e-6■□□□□ 8.1
SND1Q7KZF4 FUS-207ENST00000487974 643 ntTSL 216.75■□□□□ 0.275e-7■□□□□ 8.1
SND1Q7KZF4 DAZAP2-211ENST00000551534 571 ntTSL 416.67■□□□□ 0.262e-9■□□□□ 8.1
SND1Q7KZF4 G3BP2-206ENST00000503660 1071 ntTSL 516.33■□□□□ 0.22e-6■□□□□ 8.1
SND1Q7KZF4 IMPDH2-208ENST00000481274 840 ntTSL 216.11■□□□□ 0.172e-6■□□□□ 8.1
SND1Q7KZF4 ATP5D-209ENST00000614837 343 ntTSL 215.83■□□□□ 0.123e-8■□□□□ 8.1
SND1Q7KZF4 ATP5F1-206ENST00000493119 716 ntTSL 315.62■□□□□ 0.094e-13■□□□□ 8.1
SND1Q7KZF4 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.073e-8■□□□□ 8.1
SND1Q7KZF4 FUS-206ENST00000487509 4920 ntTSL 215.27■□□□□ 0.035e-7■□□□□ 8.1
SND1Q7KZF4 G3BP2-205ENST00000502654 546 ntTSL 415.22■□□□□ 0.032e-6■□□□□ 8.1
SND1Q7KZF4 SQSTM1-205ENST00000464493 532 ntTSL 415.07■□□□□ 03e-8■□□□□ 8.1
SND1Q7KZF4 XPO1-206ENST00000428210 6776 ntTSL 214.66□□□□□ -0.062e-9■□□□□ 8.1
SND1Q7KZF4 UBC-203ENST00000535859 582 ntTSL 214.49□□□□□ -0.092e-6■□□□□ 8.1
SND1Q7KZF4 DAZAP2-207ENST00000549497 567 ntTSL 414.32□□□□□ -0.122e-9■□□□□ 8.1
SND1Q7KZF4 SQSTM1-208ENST00000485412 656 ntTSL 214.27□□□□□ -0.133e-8■□□□□ 8.1
SND1Q7KZF4 RPL5-201ENST00000315741 681 ntTSL 514.21□□□□□ -0.132e-15■□□□□ 8.1
SND1Q7KZF4 DGUOK-205ENST00000462685 715 ntTSL 314.1□□□□□ -0.152e-6■□□□□ 8.1
SND1Q7KZF4 RPS17-205ENST00000560229 776 ntTSL 1 (best)14□□□□□ -0.174e-32■□□□□ 8.1
SND1Q7KZF4 CENPK-206ENST00000506282 658 ntTSL 513.48□□□□□ -0.253e-8■□□□□ 8.1
SND1Q7KZF4 CENPK-216ENST00000515497 653 ntTSL 313.48□□□□□ -0.253e-8■□□□□ 8.1
SND1Q7KZF4 PGD-209ENST00000496718 506 ntTSL 213.28□□□□□ -0.285e-7■□□□□ 8.1
SND1Q7KZF4 IMPDH2-202ENST00000429182 1469 ntTSL 512.93□□□□□ -0.342e-6■□□□□ 8.1
SND1Q7KZF4 CENPK-215ENST00000514814 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.363e-8■□□□□ 8.1
SND1Q7KZF4 RPL5-202ENST00000370321 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.382e-15■□□□□ 8.1
SND1Q7KZF4 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC12.38□□□□□ -0.433e-8■□□□□ 8.1
SND1Q7KZF4 UBC-214ENST00000546271 559 ntTSL 412.35□□□□□ -0.432e-6■□□□□ 8.1
SND1Q7KZF4 DAZAP2-214ENST00000552459 3664 ntTSL 212.33□□□□□ -0.442e-9■□□□□ 8.1
Retrieved 100 of 13,567 protein–RNA pairs in 44.4 ms