RNA–Protein interactions for RNA: ENST00000508635.5

UBE2D3-226, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 587 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-226ENST00000508635 AEBP2Q6ZN18 517 aaPredicted RBP19.45■□□□□ 0.7
UBE2D3-226ENST00000508635 CHIC1Q5VXU3 224 aa18.36■□□□□ 0.53
UBE2D3-226ENST00000508635 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
UBE2D3-226ENST00000508635 PHF23Q9BUL5 403 aaPredicted RBP16.48■□□□□ 0.23
UBE2D3-226ENST00000508635 POTEDQ86YR6 584 aa16.35■□□□□ 0.21
UBE2D3-226ENST00000508635 FOXD1Q16676 465 aa15.7■□□□□ 0.1
UBE2D3-226ENST00000508635 MSH5O43196 834 aa15.12■□□□□ 0.01
UBE2D3-226ENST00000508635 PIAS4Q8N2W9 510 aaPredicted RBP14.54□□□□□ -0.08
UBE2D3-226ENST00000508635 PPP6R1Q9UPN7 881 aa14.07□□□□□ -0.16
UBE2D3-226ENST00000508635 PLPPR3Q6T4P5 718 aa14.04□□□□□ -0.16
UBE2D3-226ENST00000508635 ADRA2BP18089 450 aa14□□□□□ -0.17
UBE2D3-226ENST00000508635 CACNB1Q02641 598 aaPredicted RBP13.34□□□□□ -0.27
UBE2D3-226ENST00000508635 DMRT2Q9Y5R5 561 aa13.24□□□□□ -0.29
UBE2D3-226ENST00000508635 MAPK8IP2Q13387 824 aaPredicted RBP13.04□□□□□ -0.32
UBE2D3-226ENST00000508635 SCAF1Q9H7N4 1312 aaKnown RBP13.04□□□□□ -0.32
UBE2D3-226ENST00000508635 RNF39Q9H2S5 420 aa12.76□□□□□ -0.37
UBE2D3-226ENST00000508635 DCAF8L1A6NGE4 600 aa12.69□□□□□ -0.38
UBE2D3-226ENST00000508635 C1QBPQ07021 282 aaKnown RBP12.61□□□□□ -0.39
UBE2D3-226ENST00000508635 POTEHQ6S545 545 aa12.57□□□□□ -0.4
UBE2D3-226ENST00000508635 HOXD11P31277 338 aaPredicted RBP12.49□□□□□ -0.41
UBE2D3-226ENST00000508635 DNAJC5BQ9UF47 199 aa12.33□□□□□ -0.44
UBE2D3-226ENST00000508635 RNF216Q9NWF9 866 aaPredicted RBP12.22□□□□□ -0.45
UBE2D3-226ENST00000508635 PPP4R3CPQ6ZMV5 832 aa12.15□□□□□ -0.46
UBE2D3-226ENST00000508635 CNKSR2Q8WXI2 1034 aa12.15□□□□□ -0.46
UBE2D3-226ENST00000508635 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.89□□□□□ -0.51
UBE2D3-226ENST00000508635 DSG3P32926 999 aa11.68□□□□□ -0.54
UBE2D3-226ENST00000508635 CAPN15O75808 1086 aa11.59□□□□□ -0.55
UBE2D3-226ENST00000508635 NCBP3Q53F19 620 aaKnown RBP11.59□□□□□ -0.55
UBE2D3-226ENST00000508635 SPINK5Q9NQ38 1064 aaPredicted RBP11.5□□□□□ -0.57
UBE2D3-226ENST00000508635 U3KPZ7 1027 aaPredicted RBP11.49□□□□□ -0.57
UBE2D3-226ENST00000508635 NPM3O75607 178 aaKnown RBP11.38□□□□□ -0.59
UBE2D3-226ENST00000508635 APLP2Q06481 763 aa11.34□□□□□ -0.59
UBE2D3-226ENST00000508635 RBM42Q9BTD8 480 aaKnown RBP11.31□□□□□ -0.6
UBE2D3-226ENST00000508635 ZNF219Q9P2Y4 722 aaPredicted RBP11.28□□□□□ -0.6
UBE2D3-226ENST00000508635 KCNA4P22459 653 aa11.27□□□□□ -0.61
UBE2D3-226ENST00000508635 CHRDL2Q6WN34 429 aa11.24□□□□□ -0.61
UBE2D3-226ENST00000508635 TRHP20396 242 aaPredicted RBP11.21□□□□□ -0.61
UBE2D3-226ENST00000508635 SP7Q8TDD2 431 aaPredicted RBP11.21□□□□□ -0.61
UBE2D3-226ENST00000508635 ABCB7O75027 752 aa11.18□□□□□ -0.62
UBE2D3-226ENST00000508635 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.12□□□□□ -0.63
UBE2D3-226ENST00000508635 HNRNPUL2Q1KMD3 747 aaKnown RBP11.12□□□□□ -0.63
UBE2D3-226ENST00000508635 SAMD1Q6SPF0 538 aaPredicted RBP10.97□□□□□ -0.65
UBE2D3-226ENST00000508635 SLC4A2P04920 1241 aa10.96□□□□□ -0.65
UBE2D3-226ENST00000508635 PLSCR2Q9NRY7 297 aa10.86□□□□□ -0.67
UBE2D3-226ENST00000508635 AKT1S1Q96B36 256 aa10.84□□□□□ -0.67
UBE2D3-226ENST00000508635 HAX1O00165 279 aa10.81□□□□□ -0.68
UBE2D3-226ENST00000508635 PIP4P2Q8N4L2 257 aa10.78□□□□□ -0.68
UBE2D3-226ENST00000508635 POLA2Q14181 598 aa10.76□□□□□ -0.69
UBE2D3-226ENST00000508635 SLC4A1APQ9BWU0 796 aaKnown RBP10.73□□□□□ -0.69
UBE2D3-226ENST00000508635 REM2Q8IYK8 340 aaPredicted RBP10.67□□□□□ -0.7
UBE2D3-226ENST00000508635 ZBTB12Q9Y330 459 aaPredicted RBP10.65□□□□□ -0.7
UBE2D3-226ENST00000508635 FXR2P51116 673 aaKnown RBP eCLIP10.64□□□□□ -0.71
UBE2D3-226ENST00000508635 PITPNM1O00562 1244 aa10.54□□□□□ -0.72
UBE2D3-226ENST00000508635 MYCNP04198 464 aaPredicted RBP10.53□□□□□ -0.72
UBE2D3-226ENST00000508635 EHMT2Q96KQ7 1210 aa10.53□□□□□ -0.72
UBE2D3-226ENST00000508635 LHX8Q68G74 356 aa10.5□□□□□ -0.73
UBE2D3-226ENST00000508635 EVX2Q03828 476 aa10.49□□□□□ -0.73
UBE2D3-226ENST00000508635 OSCARQ8IYS5 282 aa10.41□□□□□ -0.74
UBE2D3-226ENST00000508635 ATF5Q9Y2D1 282 aaPredicted RBP10.39□□□□□ -0.75
UBE2D3-226ENST00000508635 ZBTB22O15209 634 aa10.37□□□□□ -0.75
UBE2D3-226ENST00000508635 CSRNP3Q8WYN3 585 aa10.33□□□□□ -0.76
UBE2D3-226ENST00000508635 C19orf67A6NJJ6 358 aa10.32□□□□□ -0.76
UBE2D3-226ENST00000508635 GABBR2O75899 941 aa10.32□□□□□ -0.76
UBE2D3-226ENST00000508635 FOXD4L1Q9NU39 408 aa10.32□□□□□ -0.76
UBE2D3-226ENST00000508635 PRKAR2AP13861 404 aaKnown RBP10.29□□□□□ -0.76
UBE2D3-226ENST00000508635 SPDYE2BA6NHP3 402 aa10.2□□□□□ -0.78
UBE2D3-226ENST00000508635 SPDYE6P0CI01 402 aa10.2□□□□□ -0.78
UBE2D3-226ENST00000508635 SPDYE2Q495Y8 402 aa10.2□□□□□ -0.78
UBE2D3-226ENST00000508635 SPDYE1Q8NFV5 336 aaPredicted RBP10.2□□□□□ -0.78
UBE2D3-226ENST00000508635 CLCN6P51797 869 aa10.14□□□□□ -0.79
UBE2D3-226ENST00000508635 CLEC11AQ9Y240 323 aa10.13□□□□□ -0.79
UBE2D3-226ENST00000508635 FBLN2P98095 1184 aa10.03□□□□□ -0.8
UBE2D3-226ENST00000508635 POTEIP0CG38 1075 aa10.02□□□□□ -0.81
UBE2D3-226ENST00000508635 DCBLD2Q96PD2 775 aa9.96□□□□□ -0.82
UBE2D3-226ENST00000508635 ATXN8OSP0DMR3 200 aa9.95□□□□□ -0.82
UBE2D3-226ENST00000508635 PCDH10Q9P2E7 1040 aa9.95□□□□□ -0.82
UBE2D3-226ENST00000508635 CHADLQ6NUI6 762 aa9.93□□□□□ -0.82
UBE2D3-226ENST00000508635 SSUH2Q9Y2M2 353 aa9.93□□□□□ -0.82
UBE2D3-226ENST00000508635 CD44P16070 742 aaKnown RBP9.92□□□□□ -0.82
UBE2D3-226ENST00000508635 POTEMA6NI47 508 aa9.91□□□□□ -0.82
UBE2D3-226ENST00000508635 PRR29P0C7W0 189 aa9.91□□□□□ -0.82
UBE2D3-226ENST00000508635 ZNF692Q9BU19 519 aaPredicted RBP9.91□□□□□ -0.82
UBE2D3-226ENST00000508635 MKRN4PQ13434 485 aaPredicted RBP9.9□□□□□ -0.82
UBE2D3-226ENST00000508635 POTEGQ6S5H5 508 aa9.85□□□□□ -0.83
UBE2D3-226ENST00000508635 OTUD5Q96G74 571 aa9.83□□□□□ -0.84
UBE2D3-226ENST00000508635 FARP1Q9Y4F1 1045 aaPredicted RBP9.81□□□□□ -0.84
UBE2D3-226ENST00000508635 ZNF579Q8NAF0 562 aaKnown RBP9.77□□□□□ -0.85
UBE2D3-226ENST00000508635 PABPN1Q86U42 306 aaKnown RBP eCLIP9.71□□□□□ -0.86
UBE2D3-226ENST00000508635 ZRANB1Q9UGI0 708 aa9.67□□□□□ -0.86
UBE2D3-226ENST00000508635 POTEB2H3BUK9 544 aa9.66□□□□□ -0.86
UBE2D3-226ENST00000508635 MAMSTRQ6ZN01 415 aa9.62□□□□□ -0.87
UBE2D3-226ENST00000508635 GALR2O43603 387 aaPredicted RBP9.61□□□□□ -0.87
UBE2D3-226ENST00000508635 PAK3O75914 559 aaPredicted RBP9.55□□□□□ -0.88
UBE2D3-226ENST00000508635 C7P10643 843 aa9.51□□□□□ -0.89
UBE2D3-226ENST00000508635 SLC39A7Q92504 469 aa9.5□□□□□ -0.89
UBE2D3-226ENST00000508635 FAM163AQ96GL9 167 aaPredicted RBP9.48□□□□□ -0.89
UBE2D3-226ENST00000508635 SCUBE2Q9NQ36 999 aa9.48□□□□□ -0.89
UBE2D3-226ENST00000508635 METRNQ9UJH8 293 aa9.48□□□□□ -0.89
UBE2D3-226ENST00000508635 LCE2DQ5TA82 110 aaPredicted RBP9.46□□□□□ -0.9
UBE2D3-226ENST00000508635 PELP1Q8IZL8 1130 aaKnown RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms