RNA–Protein interactions for RNA: ENST00000504211.5

UBE2D3-217, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2 BASIC

Gene UBE2D3, Length 578 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-217ENST00000504211 AEBP2Q6ZN18 517 aaPredicted RBP30.6■■■□□ 2.49
UBE2D3-217ENST00000504211 CHIC1Q5VXU3 224 aa30.1■■■□□ 2.41
UBE2D3-217ENST00000504211 PHF23Q9BUL5 403 aaPredicted RBP26.48■■□□□ 1.83
UBE2D3-217ENST00000504211 SENP3Q9H4L4 574 aaPredicted RBP25.95■■□□□ 1.74
UBE2D3-217ENST00000504211 PLPPR3Q6T4P5 718 aa24.52■■□□□ 1.52
UBE2D3-217ENST00000504211 FOXD1Q16676 465 aa24.03■■□□□ 1.44
UBE2D3-217ENST00000504211 PPP6R1Q9UPN7 881 aa23.27■■□□□ 1.32
UBE2D3-217ENST00000504211 ADRA2BP18089 450 aa23.23■■□□□ 1.31
UBE2D3-217ENST00000504211 PIAS4Q8N2W9 510 aaPredicted RBP22.69■■□□□ 1.22
UBE2D3-217ENST00000504211 MSH5O43196 834 aa22.11■■□□□ 1.13
UBE2D3-217ENST00000504211 PPP4R3CPQ6ZMV5 832 aa21.6■■□□□ 1.05
UBE2D3-217ENST00000504211 KCNA4P22459 653 aa21.32■■□□□ 1
UBE2D3-217ENST00000504211 SCAF1Q9H7N4 1312 aaKnown RBP21.29■■□□□ 1
UBE2D3-217ENST00000504211 NCBP3Q53F19 620 aaKnown RBP21.1■□□□□ 0.97
UBE2D3-217ENST00000504211 MAPK8IP2Q13387 824 aaPredicted RBP21.01■□□□□ 0.95
UBE2D3-217ENST00000504211 CNKSR2Q8WXI2 1034 aa20.98■□□□□ 0.95
UBE2D3-217ENST00000504211 NPM3O75607 178 aaKnown RBP20.81■□□□□ 0.92
UBE2D3-217ENST00000504211 DMRT2Q9Y5R5 561 aa20.76■□□□□ 0.91
UBE2D3-217ENST00000504211 RNF216Q9NWF9 866 aaPredicted RBP20.54■□□□□ 0.88
UBE2D3-217ENST00000504211 HOXD11P31277 338 aaPredicted RBP20.42■□□□□ 0.86
UBE2D3-217ENST00000504211 SLC4A1APQ9BWU0 796 aaKnown RBP20.34■□□□□ 0.85
UBE2D3-217ENST00000504211 DNAJC5BQ9UF47 199 aa20.31■□□□□ 0.84
UBE2D3-217ENST00000504211 EHMT2Q96KQ7 1210 aa19.93■□□□□ 0.78
UBE2D3-217ENST00000504211 POTEDQ86YR6 584 aa19.76■□□□□ 0.75
UBE2D3-217ENST00000504211 DCAF8L1A6NGE4 600 aa19.72■□□□□ 0.75
UBE2D3-217ENST00000504211 CSRNP3Q8WYN3 585 aa19.68■□□□□ 0.74
UBE2D3-217ENST00000504211 ZBTB22O15209 634 aa19.66■□□□□ 0.74
UBE2D3-217ENST00000504211 SLC4A2P04920 1241 aa19.61■□□□□ 0.73
UBE2D3-217ENST00000504211 FOXD4L1Q9NU39 408 aa19.6■□□□□ 0.73
UBE2D3-217ENST00000504211 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.37■□□□□ 0.69
UBE2D3-217ENST00000504211 MYCNP04198 464 aaPredicted RBP19.23■□□□□ 0.67
UBE2D3-217ENST00000504211 U3KPZ7 1027 aaPredicted RBP19.14■□□□□ 0.65
UBE2D3-217ENST00000504211 RNF39Q9H2S5 420 aa18.98■□□□□ 0.63
UBE2D3-217ENST00000504211 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.97■□□□□ 0.63
UBE2D3-217ENST00000504211 HNRNPUL2Q1KMD3 747 aaKnown RBP18.97■□□□□ 0.63
UBE2D3-217ENST00000504211 ATXN8OSP0DMR3 200 aa18.94■□□□□ 0.62
UBE2D3-217ENST00000504211 SAMD1Q6SPF0 538 aaPredicted RBP18.91■□□□□ 0.62
UBE2D3-217ENST00000504211 C1QBPQ07021 282 aaKnown RBP18.76■□□□□ 0.59
UBE2D3-217ENST00000504211 APLP2Q06481 763 aa18.72■□□□□ 0.59
UBE2D3-217ENST00000504211 ATF5Q9Y2D1 282 aaPredicted RBP18.67■□□□□ 0.58
UBE2D3-217ENST00000504211 SPINK5Q9NQ38 1064 aaPredicted RBP18.51■□□□□ 0.55
UBE2D3-217ENST00000504211 ZNF219Q9P2Y4 722 aaPredicted RBP18.43■□□□□ 0.54
UBE2D3-217ENST00000504211 CAPN15O75808 1086 aa18.39■□□□□ 0.53
UBE2D3-217ENST00000504211 TRHP20396 242 aaPredicted RBP18.34■□□□□ 0.53
UBE2D3-217ENST00000504211 CACNB1Q02641 598 aaPredicted RBP18.26■□□□□ 0.51
UBE2D3-217ENST00000504211 POLA2Q14181 598 aa18.12■□□□□ 0.49
UBE2D3-217ENST00000504211 DSG3P32926 999 aa18.11■□□□□ 0.49
UBE2D3-217ENST00000504211 ABCB7O75027 752 aa18.06■□□□□ 0.48
UBE2D3-217ENST00000504211 MKRN4PQ13434 485 aaPredicted RBP17.9■□□□□ 0.46
UBE2D3-217ENST00000504211 ZBTB12Q9Y330 459 aaPredicted RBP17.9■□□□□ 0.46
UBE2D3-217ENST00000504211 FBLN2P98095 1184 aa17.86■□□□□ 0.45
UBE2D3-217ENST00000504211 FKBP8Q14318 412 aa17.75■□□□□ 0.43
UBE2D3-217ENST00000504211 SPDYE4A6NLX3 237 aa17.56■□□□□ 0.4
UBE2D3-217ENST00000504211 OSCARQ8IYS5 282 aa17.52■□□□□ 0.4
UBE2D3-217ENST00000504211 SPDYE2BA6NHP3 402 aa17.44■□□□□ 0.38
UBE2D3-217ENST00000504211 SPDYE6P0CI01 402 aa17.44■□□□□ 0.38
UBE2D3-217ENST00000504211 SPDYE2Q495Y8 402 aa17.44■□□□□ 0.38
UBE2D3-217ENST00000504211 PROM2Q8N271 834 aa17.4■□□□□ 0.38
UBE2D3-217ENST00000504211 SSUH2Q9Y2M2 353 aa17.35■□□□□ 0.37
UBE2D3-217ENST00000504211 ZNF692Q9BU19 519 aaPredicted RBP17.34■□□□□ 0.37
UBE2D3-217ENST00000504211 RBM42Q9BTD8 480 aaKnown RBP17.25■□□□□ 0.35
UBE2D3-217ENST00000504211 PABPN1Q86U42 306 aaKnown RBP eCLIP17.12■□□□□ 0.33
UBE2D3-217ENST00000504211 FBXO3Q9UK99 471 aa17.1■□□□□ 0.33
UBE2D3-217ENST00000504211 AKT1S1Q96B36 256 aa17.09■□□□□ 0.33
UBE2D3-217ENST00000504211 STAG3Q9UJ98 1225 aa16.91■□□□□ 0.3
UBE2D3-217ENST00000504211 REM2Q8IYK8 340 aaPredicted RBP16.9■□□□□ 0.3
UBE2D3-217ENST00000504211 VASPP50552 380 aaPredicted RBP16.87■□□□□ 0.29
UBE2D3-217ENST00000504211 SPDYE1Q8NFV5 336 aaPredicted RBP16.84■□□□□ 0.29
UBE2D3-217ENST00000504211 PITPNM1O00562 1244 aa16.71■□□□□ 0.27
UBE2D3-217ENST00000504211 CLEC11AQ9Y240 323 aa16.68■□□□□ 0.26
UBE2D3-217ENST00000504211 IFNLR1Q8IU57 520 aaPredicted RBP16.64■□□□□ 0.25
UBE2D3-217ENST00000504211 PRR29P0C7W0 189 aa16.6■□□□□ 0.25
UBE2D3-217ENST00000504211 PLCD3Q8N3E9 789 aa16.6■□□□□ 0.25
UBE2D3-217ENST00000504211 MIER1Q8N108 512 aa16.58■□□□□ 0.24
UBE2D3-217ENST00000504211 AMER1Q5JTC6 1135 aaPredicted RBP16.56■□□□□ 0.24
UBE2D3-217ENST00000504211 PLEKHG5O94827 1062 aa16.5■□□□□ 0.23
UBE2D3-217ENST00000504211 RTN4Q9NQC3 1192 aaKnown RBP16.49■□□□□ 0.23
UBE2D3-217ENST00000504211 CREBZFQ9NS37 354 aa16.48■□□□□ 0.23
UBE2D3-217ENST00000504211 ZBTB47Q9UFB7 747 aaPredicted RBP16.46■□□□□ 0.23
UBE2D3-217ENST00000504211 KLHL34Q8N239 644 aa16.45■□□□□ 0.22
UBE2D3-217ENST00000504211 CHRDL2Q6WN34 429 aa16.43■□□□□ 0.22
UBE2D3-217ENST00000504211 SPOCK2Q92563 424 aa16.41■□□□□ 0.22
UBE2D3-217ENST00000504211 FXR2P51116 673 aaKnown RBP eCLIP16.38■□□□□ 0.21
UBE2D3-217ENST00000504211 MNX1P50219 401 aaPredicted RBP16.36■□□□□ 0.21
UBE2D3-217ENST00000504211 CHADLQ6NUI6 762 aa16.28■□□□□ 0.2
UBE2D3-217ENST00000504211 PIP4P2Q8N4L2 257 aa16.27■□□□□ 0.2
UBE2D3-217ENST00000504211 PRKAR2AP13861 404 aaKnown RBP16.26■□□□□ 0.19
UBE2D3-217ENST00000504211 NUBP1P53384 320 aa16.22■□□□□ 0.19
UBE2D3-217ENST00000504211 NPM1P06748 294 aaKnown RBP eCLIP16.2■□□□□ 0.18
UBE2D3-217ENST00000504211 FARP1Q9Y4F1 1045 aaPredicted RBP16.19■□□□□ 0.18
UBE2D3-217ENST00000504211 PKD2Q13563 968 aa16.18■□□□□ 0.18
UBE2D3-217ENST00000504211 RASEFQ8IZ41 740 aa16.09■□□□□ 0.17
UBE2D3-217ENST00000504211 GSE1Q14687 1217 aa16.08■□□□□ 0.16
UBE2D3-217ENST00000504211 FAM212AQ96EL1 285 aa16.06■□□□□ 0.16
UBE2D3-217ENST00000504211 CIZ1Q9ULV3 898 aaPredicted RBP16.06■□□□□ 0.16
UBE2D3-217ENST00000504211 TRIM41Q8WV44 630 aa16.01■□□□□ 0.15
UBE2D3-217ENST00000504211 ECM2O94769 699 aaPredicted RBP15.99■□□□□ 0.15
UBE2D3-217ENST00000504211 DCAF8Q5TAQ9 597 aa15.99■□□□□ 0.15
UBE2D3-217ENST00000504211 CHRM1P11229 460 aaPredicted RBP15.88■□□□□ 0.13
UBE2D3-217ENST00000504211 TSPYL2Q9H2G4 693 aaPredicted RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms