RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 NISCHQ9Y2I1 1504 aa34.96■■■■□ 3.19
SQSTM1-205ENST00000464493 CCDC180Q9P1Z9 1646 aa30.99■■■□□ 2.55
SQSTM1-205ENST00000464493 ABCC9O60706 1549 aa30.25■■■□□ 2.43
SQSTM1-205ENST00000464493 DCAF8L2P0C7V8 631 aa29.24■■■□□ 2.27
SQSTM1-205ENST00000464493 NACADO15069 1562 aa29.14■■■□□ 2.26
SQSTM1-205ENST00000464493 RB1CC1Q8TDY2 1594 aa29.13■■■□□ 2.25
SQSTM1-205ENST00000464493 ZCCHC6Q5VYS8 1495 aaKnown RBP29.12■■■□□ 2.25
SQSTM1-205ENST00000464493 MYO15BQ96JP2 1530 aa28.99■■■□□ 2.23
SQSTM1-205ENST00000464493 DCAF1Q9Y4B6 1507 aa28.91■■■□□ 2.22
SQSTM1-205ENST00000464493 UNC13AQ9UPW8 1703 aa28.47■■■□□ 2.15
SQSTM1-205ENST00000464493 PABPN1Q86U42 306 aaKnown RBP eCLIP28.32■■■□□ 2.12
SQSTM1-205ENST00000464493 SCRIBQ14160 1630 aa28.31■■■□□ 2.12
SQSTM1-205ENST00000464493 BICRAQ9NZM4 1560 aa28.24■■■□□ 2.11
SQSTM1-205ENST00000464493 SHROOM4Q9ULL8 1493 aa27.94■■■□□ 2.06
SQSTM1-205ENST00000464493 DNAJC5BQ9UF47 199 aa27.68■■■□□ 2.02
SQSTM1-205ENST00000464493 EIF4G1Q04637 1599 aaKnown RBP27.49■■□□□ 1.99
SQSTM1-205ENST00000464493 CC2D2AQ9P2K1 1620 aa27.36■■□□□ 1.97
SQSTM1-205ENST00000464493 CECR2Q9BXF3 1484 aa27.22■■□□□ 1.95
SQSTM1-205ENST00000464493 SMARCA4P51532 1647 aa27.08■■□□□ 1.93
SQSTM1-205ENST00000464493 BAZ1AQ9NRL2 1556 aaPredicted RBP27.08■■□□□ 1.93
SQSTM1-205ENST00000464493 MROH2BQ7Z745 1585 aa26.93■■□□□ 1.9
SQSTM1-205ENST00000464493 ATAD2BQ9ULI0 1458 aa26.93■■□□□ 1.9
SQSTM1-205ENST00000464493 SMARCA2P51531 1590 aa26.89■■□□□ 1.9
SQSTM1-205ENST00000464493 NCAPD3P42695 1498 aa26.89■■□□□ 1.9
SQSTM1-205ENST00000464493 PEG3Q9GZU2 1588 aa26.81■■□□□ 1.88
SQSTM1-205ENST00000464493 HMGXB3Q12766 1538 aa26.75■■□□□ 1.87
SQSTM1-205ENST00000464493 BAZ1BQ9UIG0 1483 aaKnown RBP26.71■■□□□ 1.87
SQSTM1-205ENST00000464493 RSF1Q96T23 1441 aaPredicted RBP26.68■■□□□ 1.86
SQSTM1-205ENST00000464493 WIZO95785 1651 aa26.66■■□□□ 1.86
SQSTM1-205ENST00000464493 TOP2AP11388 1531 aaKnown RBP26.36■■□□□ 1.81
SQSTM1-205ENST00000464493 NESP48681 1621 aa26.21■■□□□ 1.79
SQSTM1-205ENST00000464493 SUPT5HO00267 1087 aaKnown RBP26.16■■□□□ 1.78
SQSTM1-205ENST00000464493 LAMC3Q9Y6N6 1575 aa26.15■■□□□ 1.78
SQSTM1-205ENST00000464493 CADPSQ9ULU8 1353 aa26.13■■□□□ 1.77
SQSTM1-205ENST00000464493 CCDC88BA6NC98 1476 aa26.09■■□□□ 1.77
SQSTM1-205ENST00000464493 ERCC6Q03468 1493 aa26.07■■□□□ 1.76
SQSTM1-205ENST00000464493 PDS5BQ9NTI5 1447 aa26■■□□□ 1.75
SQSTM1-205ENST00000464493 CFTRP13569 1480 aa25.98■■□□□ 1.75
SQSTM1-205ENST00000464493 KIF21AQ7Z4S6 1674 aa25.89■■□□□ 1.73
SQSTM1-205ENST00000464493 FANCD2Q9BXW9 1451 aa25.81■■□□□ 1.72
SQSTM1-205ENST00000464493 PRDM2Q13029 1718 aa25.77■■□□□ 1.72
SQSTM1-205ENST00000464493 CEP164Q9UPV0 1460 aa25.76■■□□□ 1.71
SQSTM1-205ENST00000464493 THOC2Q8NI27 1593 aaKnown RBP25.75■■□□□ 1.71
SQSTM1-205ENST00000464493 CUX2O14529 1486 aa25.73■■□□□ 1.71
SQSTM1-205ENST00000464493 MRC2Q9UBG0 1479 aa25.7■■□□□ 1.7
SQSTM1-205ENST00000464493 WDR62O43379 1518 aa25.6■■□□□ 1.69
SQSTM1-205ENST00000464493 URB2Q14146 1524 aaKnown RBP25.53■■□□□ 1.68
SQSTM1-205ENST00000464493 ABCC8Q09428 1581 aa25.44■■□□□ 1.66
SQSTM1-205ENST00000464493 TOPBP1Q92547 1522 aa25.41■■□□□ 1.66
SQSTM1-205ENST00000464493 DNMBPQ6XZF7 1577 aa25.38■■□□□ 1.65
SQSTM1-205ENST00000464493 CUX1P39880 1505 aa25.26■■□□□ 1.63
SQSTM1-205ENST00000464493 IFT140Q96RY7 1462 aa25.22■■□□□ 1.63
SQSTM1-205ENST00000464493 POLA1P09884 1462 aaPredicted RBP25.2■■□□□ 1.62
SQSTM1-205ENST00000464493 WRNQ14191 1432 aaPredicted RBP eCLIP25.16■■□□□ 1.624e-10■■□□□ 11.8
SQSTM1-205ENST00000464493 FGD5Q6ZNL6 1462 aa25.15■■□□□ 1.62
SQSTM1-205ENST00000464493 SOGA1O94964 1423 aa25.13■■□□□ 1.61
SQSTM1-205ENST00000464493 TARBP1Q13395 1621 aaKnown RBP25.12■■□□□ 1.61
SQSTM1-205ENST00000464493 RAD54L2Q9Y4B4 1467 aa25.1■■□□□ 1.61
SQSTM1-205ENST00000464493 ZNF608Q9ULD9 1512 aaPredicted RBP25.1■■□□□ 1.61
SQSTM1-205ENST00000464493 TOP2BQ02880 1626 aa25.08■■□□□ 1.6
SQSTM1-205ENST00000464493 SYNJ1O43426 1573 aa25.07■■□□□ 1.6
SQSTM1-205ENST00000464493 BIVM-ERCC5R4GMW8 1640 aa25.06■■□□□ 1.6
SQSTM1-205ENST00000464493 AQRO60306 1485 aaKnown RBP eCLIP24.99■■□□□ 1.598e-8■■■■□ 22.7
SQSTM1-205ENST00000464493 EIF4G3O43432 1585 aaKnown RBP24.98■■□□□ 1.59
SQSTM1-205ENST00000464493 TDRD9Q8NDG6 1382 aaKnown RBP24.97■■□□□ 1.59
SQSTM1-205ENST00000464493 ABCA10Q8WWZ4 1543 aa24.92■■□□□ 1.58
SQSTM1-205ENST00000464493 WDR97A6NE52 1622 aa24.91■■□□□ 1.58
SQSTM1-205ENST00000464493 DNAJC5Q9H3Z4 198 aa24.85■■□□□ 1.57
SQSTM1-205ENST00000464493 GAPVD1Q14C86 1478 aa24.83■■□□□ 1.57
SQSTM1-205ENST00000464493 GRIN2BQ13224 1484 aa24.8■■□□□ 1.56
SQSTM1-205ENST00000464493 ABCA5Q8WWZ7 1642 aa24.79■■□□□ 1.56
SQSTM1-205ENST00000464493 OSCARQ8IYS5 282 aa24.75■■□□□ 1.55
SQSTM1-205ENST00000464493 SNAPC4Q5SXM2 1469 aa24.74■■□□□ 1.55
SQSTM1-205ENST00000464493 PBRM1Q86U86 1689 aa24.74■■□□□ 1.55
SQSTM1-205ENST00000464493 MAGI1Q96QZ7 1491 aaPredicted RBP24.71■■□□□ 1.55
SQSTM1-205ENST00000464493 FBLN2P98095 1184 aa24.71■■□□□ 1.55
SQSTM1-205ENST00000464493 TRIM41Q8WV44 630 aa24.71■■□□□ 1.55
SQSTM1-205ENST00000464493 CHD1O14646 1710 aa24.65■■□□□ 1.54
SQSTM1-205ENST00000464493 CHMP7Q8WUX9 453 aaPredicted RBP24.65■■□□□ 1.54
SQSTM1-205ENST00000464493 KIF27Q86VH2 1401 aa24.63■■□□□ 1.53
SQSTM1-205ENST00000464493 ERICH3Q5RHP9 1530 aa24.63■■□□□ 1.53
SQSTM1-205ENST00000464493 SYNJ2O15056 1496 aa24.62■■□□□ 1.53
SQSTM1-205ENST00000464493 FHAD1B1AJZ9 1412 aa24.54■■□□□ 1.52
SQSTM1-205ENST00000464493 ADAMTS12P58397 1594 aa24.54■■□□□ 1.52
SQSTM1-205ENST00000464493 IGF1RP08069 1367 aa24.54■■□□□ 1.52
SQSTM1-205ENST00000464493 GRIN2AQ12879 1464 aa24.47■■□□□ 1.51
SQSTM1-205ENST00000464493 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
SQSTM1-205ENST00000464493 RUSC2Q8N2Y8 1516 aa24.45■■□□□ 1.5
SQSTM1-205ENST00000464493 CUL7Q14999 1698 aa24.42■■□□□ 1.5
SQSTM1-205ENST00000464493 CARMIL1Q5VZK9 1371 aa24.4■■□□□ 1.5
SQSTM1-205ENST00000464493 CLASP1Q7Z460 1538 aa24.38■■□□□ 1.49
SQSTM1-205ENST00000464493 NUP160Q12769 1436 aa24.36■■□□□ 1.49
SQSTM1-205ENST00000464493 CEP170Q5SW79 1584 aa24.33■■□□□ 1.49
SQSTM1-205ENST00000464493 ARHGEF11O15085 1522 aa24.29■■□□□ 1.48
SQSTM1-205ENST00000464493 RIMBP3CA6NJZ7 1639 aa24.28■■□□□ 1.48
SQSTM1-205ENST00000464493 RIMBP3BA6NNM3 1639 aa24.28■■□□□ 1.48
SQSTM1-205ENST00000464493 RIMBP3Q9UFD9 1639 aa24.28■■□□□ 1.48
SQSTM1-205ENST00000464493 RAPGEF2Q9Y4G8 1499 aa24.24■■□□□ 1.47
SQSTM1-205ENST00000464493 CSRNP3Q8WYN3 585 aa24.23■■□□□ 1.47
SQSTM1-205ENST00000464493 EEA1Q15075 1411 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms