RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 NISCHQ9Y2I1 1504 aa35.03■■■■□ 3.2
SQSTM1-208ENST00000485412 ABCC9O60706 1549 aa31.78■■■□□ 2.68
SQSTM1-208ENST00000485412 CCDC180Q9P1Z9 1646 aa31.49■■■□□ 2.63
SQSTM1-208ENST00000485412 RB1CC1Q8TDY2 1594 aa30.13■■■□□ 2.41
SQSTM1-208ENST00000485412 DNAJC5BQ9UF47 199 aa30.02■■■□□ 2.4
SQSTM1-208ENST00000485412 NACADO15069 1562 aa29.82■■■□□ 2.36
SQSTM1-208ENST00000485412 DCAF8L2P0C7V8 631 aa29.63■■■□□ 2.33
SQSTM1-208ENST00000485412 PABPN1Q86U42 306 aaKnown RBP eCLIP29.52■■■□□ 2.32
SQSTM1-208ENST00000485412 UNC13AQ9UPW8 1703 aa29.48■■■□□ 2.31
SQSTM1-208ENST00000485412 MYO15BQ96JP2 1530 aa29.26■■■□□ 2.27
SQSTM1-208ENST00000485412 BICRAQ9NZM4 1560 aa29.22■■■□□ 2.27
SQSTM1-208ENST00000485412 ZCCHC6Q5VYS8 1495 aaKnown RBP29.04■■■□□ 2.24
SQSTM1-208ENST00000485412 DCAF1Q9Y4B6 1507 aa28.87■■■□□ 2.21
SQSTM1-208ENST00000485412 SHROOM4Q9ULL8 1493 aa28.8■■■□□ 2.2
SQSTM1-208ENST00000485412 SCRIBQ14160 1630 aa28.75■■■□□ 2.19
SQSTM1-208ENST00000485412 CC2D2AQ9P2K1 1620 aa28.7■■■□□ 2.19
SQSTM1-208ENST00000485412 CECR2Q9BXF3 1484 aa28.66■■■□□ 2.18
SQSTM1-208ENST00000485412 EIF4G1Q04637 1599 aaKnown RBP28.55■■■□□ 2.16
SQSTM1-208ENST00000485412 DNAJC5Q9H3Z4 198 aa27.83■■■□□ 2.05
SQSTM1-208ENST00000485412 CUX2O14529 1486 aa27.52■■■□□ 2
SQSTM1-208ENST00000485412 NCAPD3P42695 1498 aa27.5■■□□□ 1.99
SQSTM1-208ENST00000485412 ERCC6Q03468 1493 aa27.5■■□□□ 1.99
SQSTM1-208ENST00000485412 ATAD2BQ9ULI0 1458 aa27.38■■□□□ 1.97
SQSTM1-208ENST00000485412 SMARCA4P51532 1647 aa27.38■■□□□ 1.97
SQSTM1-208ENST00000485412 SMARCA2P51531 1590 aa27.33■■□□□ 1.97
SQSTM1-208ENST00000485412 HMGXB3Q12766 1538 aa27.31■■□□□ 1.96
SQSTM1-208ENST00000485412 NESP48681 1621 aa27.19■■□□□ 1.94
SQSTM1-208ENST00000485412 BAZ1AQ9NRL2 1556 aaPredicted RBP27.16■■□□□ 1.94
SQSTM1-208ENST00000485412 BAZ1BQ9UIG0 1483 aaKnown RBP27.14■■□□□ 1.94
SQSTM1-208ENST00000485412 PEG3Q9GZU2 1588 aa27.07■■□□□ 1.92
SQSTM1-208ENST00000485412 MROH2BQ7Z745 1585 aa27.05■■□□□ 1.92
SQSTM1-208ENST00000485412 THOC2Q8NI27 1593 aaKnown RBP27.01■■□□□ 1.91
SQSTM1-208ENST00000485412 LAMC3Q9Y6N6 1575 aa26.98■■□□□ 1.91
SQSTM1-208ENST00000485412 KIF21AQ7Z4S6 1674 aa26.89■■□□□ 1.9
SQSTM1-208ENST00000485412 PDS5BQ9NTI5 1447 aa26.82■■□□□ 1.88
SQSTM1-208ENST00000485412 WIZO95785 1651 aa26.76■■□□□ 1.87
SQSTM1-208ENST00000485412 CADPSQ9ULU8 1353 aa26.66■■□□□ 1.86
SQSTM1-208ENST00000485412 MRC2Q9UBG0 1479 aa26.62■■□□□ 1.85
SQSTM1-208ENST00000485412 WDR62O43379 1518 aa26.55■■□□□ 1.84
SQSTM1-208ENST00000485412 TRIM41Q8WV44 630 aa26.55■■□□□ 1.84
SQSTM1-208ENST00000485412 CEP164Q9UPV0 1460 aa26.46■■□□□ 1.83
SQSTM1-208ENST00000485412 RSF1Q96T23 1441 aaPredicted RBP26.41■■□□□ 1.82
SQSTM1-208ENST00000485412 FANCD2Q9BXW9 1451 aa26.38■■□□□ 1.81
SQSTM1-208ENST00000485412 TOP2AP11388 1531 aaKnown RBP26.34■■□□□ 1.81
SQSTM1-208ENST00000485412 CFTRP13569 1480 aa26.29■■□□□ 1.8
SQSTM1-208ENST00000485412 OSCARQ8IYS5 282 aa26.2■■□□□ 1.78
SQSTM1-208ENST00000485412 URB2Q14146 1524 aaKnown RBP26.17■■□□□ 1.78
SQSTM1-208ENST00000485412 PRDM2Q13029 1718 aa26.14■■□□□ 1.78
SQSTM1-208ENST00000485412 CCDC88BA6NC98 1476 aa26.04■■□□□ 1.76
SQSTM1-208ENST00000485412 RIMBP3CA6NJZ7 1639 aa25.93■■□□□ 1.74
SQSTM1-208ENST00000485412 RIMBP3BA6NNM3 1639 aa25.93■■□□□ 1.74
SQSTM1-208ENST00000485412 RIMBP3Q9UFD9 1639 aa25.93■■□□□ 1.74
SQSTM1-208ENST00000485412 IFT140Q96RY7 1462 aa25.92■■□□□ 1.74
SQSTM1-208ENST00000485412 ZNF608Q9ULD9 1512 aaPredicted RBP25.9■■□□□ 1.74
SQSTM1-208ENST00000485412 TOPBP1Q92547 1522 aa25.84■■□□□ 1.73
SQSTM1-208ENST00000485412 ARHGEF11O15085 1522 aa25.79■■□□□ 1.72
SQSTM1-208ENST00000485412 EIF4G3O43432 1585 aaKnown RBP25.78■■□□□ 1.72
SQSTM1-208ENST00000485412 ABCC8Q09428 1581 aa25.78■■□□□ 1.72
SQSTM1-208ENST00000485412 DNMBPQ6XZF7 1577 aa25.74■■□□□ 1.71
SQSTM1-208ENST00000485412 CHD1O14646 1710 aa25.69■■□□□ 1.7
SQSTM1-208ENST00000485412 TARBP1Q13395 1621 aaKnown RBP25.66■■□□□ 1.7
SQSTM1-208ENST00000485412 AQRO60306 1485 aaKnown RBP eCLIP25.63■■□□□ 1.692e-7■□□□□ 11.3
SQSTM1-208ENST00000485412 CYB5RLQ6IPT4 315 aa25.62■■□□□ 1.69
SQSTM1-208ENST00000485412 POLA1P09884 1462 aaPredicted RBP25.58■■□□□ 1.69
SQSTM1-208ENST00000485412 FBLN2P98095 1184 aa25.57■■□□□ 1.68
SQSTM1-208ENST00000485412 ARAP1Q96P48 1450 aa25.51■■□□□ 1.67
SQSTM1-208ENST00000485412 RAD54L2Q9Y4B4 1467 aa25.51■■□□□ 1.67
SQSTM1-208ENST00000485412 TRHP20396 242 aaPredicted RBP25.48■■□□□ 1.67
SQSTM1-208ENST00000485412 SOGA1O94964 1423 aa25.44■■□□□ 1.66
SQSTM1-208ENST00000485412 TDRD9Q8NDG6 1382 aaKnown RBP25.42■■□□□ 1.66
SQSTM1-208ENST00000485412 CUX1P39880 1505 aa25.42■■□□□ 1.66
SQSTM1-208ENST00000485412 FGD5Q6ZNL6 1462 aa25.41■■□□□ 1.66
SQSTM1-208ENST00000485412 SNAPC4Q5SXM2 1469 aa25.39■■□□□ 1.65
SQSTM1-208ENST00000485412 WDR97A6NE52 1622 aa25.38■■□□□ 1.65
SQSTM1-208ENST00000485412 CLASP1Q7Z460 1538 aa25.32■■□□□ 1.64
SQSTM1-208ENST00000485412 SYNJ1O43426 1573 aa25.32■■□□□ 1.64
SQSTM1-208ENST00000485412 CHMP7Q8WUX9 453 aaPredicted RBP25.31■■□□□ 1.64
SQSTM1-208ENST00000485412 MAGI1Q96QZ7 1491 aaPredicted RBP25.29■■□□□ 1.64
SQSTM1-208ENST00000485412 GRIN2BQ13224 1484 aa25.26■■□□□ 1.63
SQSTM1-208ENST00000485412 PBRM1Q86U86 1689 aa25.22■■□□□ 1.63
SQSTM1-208ENST00000485412 SYNJ2O15056 1496 aa25.21■■□□□ 1.63
SQSTM1-208ENST00000485412 SUPT5HO00267 1087 aaKnown RBP25.18■■□□□ 1.62
SQSTM1-208ENST00000485412 GAPVD1Q14C86 1478 aa25.13■■□□□ 1.61
SQSTM1-208ENST00000485412 ABCA5Q8WWZ7 1642 aa25.12■■□□□ 1.61
SQSTM1-208ENST00000485412 ABCA10Q8WWZ4 1543 aa25.07■■□□□ 1.6
SQSTM1-208ENST00000485412 AEBP2Q6ZN18 517 aaPredicted RBP25■■□□□ 1.59
SQSTM1-208ENST00000485412 BIVM-ERCC5R4GMW8 1640 aa24.99■■□□□ 1.59
SQSTM1-208ENST00000485412 TOP2BQ02880 1626 aa24.96■■□□□ 1.59
SQSTM1-208ENST00000485412 ADAMTS12P58397 1594 aa24.93■■□□□ 1.58
SQSTM1-208ENST00000485412 GRIN2AQ12879 1464 aa24.93■■□□□ 1.58
SQSTM1-208ENST00000485412 WRNQ14191 1432 aaPredicted RBP eCLIP24.92■■□□□ 1.58
SQSTM1-208ENST00000485412 ERCC6L2Q5T890 1561 aa24.92■■□□□ 1.58
SQSTM1-208ENST00000485412 CEP170Q5SW79 1584 aa24.88■■□□□ 1.57
SQSTM1-208ENST00000485412 NUP160Q12769 1436 aa24.84■■□□□ 1.57
SQSTM1-208ENST00000485412 SHROOM2Q13796 1616 aa24.79■■□□□ 1.56
SQSTM1-208ENST00000485412 FHAD1B1AJZ9 1412 aa24.79■■□□□ 1.56
SQSTM1-208ENST00000485412 ERICH3Q5RHP9 1530 aa24.75■■□□□ 1.55
SQSTM1-208ENST00000485412 KIF13AQ9H1H9 1805 aa24.68■■□□□ 1.54
SQSTM1-208ENST00000485412 PRG4Q92954 1404 aaPredicted RBP24.65■■□□□ 1.54
SQSTM1-208ENST00000485412 JPH4Q96JJ6 628 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms