RNA–Protein interactions for RNA: ENST00000502404.5

UBE2D3-211, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4 BASIC

Gene UBE2D3, Length 574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-211ENST00000502404 AEBP2Q6ZN18 517 aaPredicted RBP30.6■■■□□ 2.49
UBE2D3-211ENST00000502404 CHIC1Q5VXU3 224 aa30.1■■■□□ 2.41
UBE2D3-211ENST00000502404 NISCHQ9Y2I1 1504 aa27.64■■■□□ 2.02
UBE2D3-211ENST00000502404 PHF23Q9BUL5 403 aaPredicted RBP26.48■■□□□ 1.83
UBE2D3-211ENST00000502404 SENP3Q9H4L4 574 aaPredicted RBP25.95■■□□□ 1.74
UBE2D3-211ENST00000502404 ABCC9O60706 1549 aa24.86■■□□□ 1.57
UBE2D3-211ENST00000502404 CCDC180Q9P1Z9 1646 aa24.79■■□□□ 1.56
UBE2D3-211ENST00000502404 PLPPR3Q6T4P5 718 aa24.52■■□□□ 1.52
UBE2D3-211ENST00000502404 FOXD1Q16676 465 aa24.03■■□□□ 1.44
UBE2D3-211ENST00000502404 RB1CC1Q8TDY2 1594 aa23.68■■□□□ 1.38
UBE2D3-211ENST00000502404 NACADO15069 1562 aa23.52■■□□□ 1.36
UBE2D3-211ENST00000502404 DCAF8L2P0C7V8 631 aa23.49■■□□□ 1.35
UBE2D3-211ENST00000502404 DNAJC5BQ9UF47 199 aa23.33■■□□□ 1.33
UBE2D3-211ENST00000502404 PPP6R1Q9UPN7 881 aa23.27■■□□□ 1.32
UBE2D3-211ENST00000502404 ADRA2BP18089 450 aa23.23■■□□□ 1.31
UBE2D3-211ENST00000502404 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
UBE2D3-211ENST00000502404 PABPN1Q86U42 306 aaKnown RBP eCLIP23.18■■□□□ 1.3
UBE2D3-211ENST00000502404 UNC13AQ9UPW8 1703 aa22.96■■□□□ 1.27
UBE2D3-211ENST00000502404 BICRAQ9NZM4 1560 aa22.88■■□□□ 1.25
UBE2D3-211ENST00000502404 ZCCHC6Q5VYS8 1495 aaKnown RBP22.87■■□□□ 1.25
UBE2D3-211ENST00000502404 DCAF1Q9Y4B6 1507 aa22.86■■□□□ 1.25
UBE2D3-211ENST00000502404 SHROOM4Q9ULL8 1493 aa22.71■■□□□ 1.23
UBE2D3-211ENST00000502404 PIAS4Q8N2W9 510 aaPredicted RBP22.69■■□□□ 1.22
UBE2D3-211ENST00000502404 SCRIBQ14160 1630 aa22.56■■□□□ 1.2
UBE2D3-211ENST00000502404 CECR2Q9BXF3 1484 aa22.42■■□□□ 1.18
UBE2D3-211ENST00000502404 CC2D2AQ9P2K1 1620 aa22.42■■□□□ 1.18
UBE2D3-211ENST00000502404 EIF4G1Q04637 1599 aaKnown RBP22.38■■□□□ 1.17
UBE2D3-211ENST00000502404 MSH5O43196 834 aa22.11■■□□□ 1.13
UBE2D3-211ENST00000502404 NCAPD3P42695 1498 aa21.71■■□□□ 1.07
UBE2D3-211ENST00000502404 ATAD2BQ9ULI0 1458 aa21.61■■□□□ 1.05
UBE2D3-211ENST00000502404 PPP4R3CPQ6ZMV5 832 aa21.6■■□□□ 1.05
UBE2D3-211ENST00000502404 SMARCA2P51531 1590 aa21.58■■□□□ 1.05
UBE2D3-211ENST00000502404 DNAJC5Q9H3Z4 198 aa21.57■■□□□ 1.04
UBE2D3-211ENST00000502404 ERCC6Q03468 1493 aa21.54■■□□□ 1.04
UBE2D3-211ENST00000502404 SMARCA4P51532 1647 aa21.53■■□□□ 1.04
UBE2D3-211ENST00000502404 HMGXB3Q12766 1538 aa21.5■■□□□ 1.03
UBE2D3-211ENST00000502404 CUX2O14529 1486 aa21.5■■□□□ 1.03
UBE2D3-211ENST00000502404 BAZ1AQ9NRL2 1556 aaPredicted RBP21.48■■□□□ 1.03
UBE2D3-211ENST00000502404 BAZ1BQ9UIG0 1483 aaKnown RBP21.43■■□□□ 1.02
UBE2D3-211ENST00000502404 PEG3Q9GZU2 1588 aa21.34■■□□□ 1.01
UBE2D3-211ENST00000502404 KCNA4P22459 653 aa21.32■■□□□ 1
UBE2D3-211ENST00000502404 NESP48681 1621 aa21.29■■□□□ 1
UBE2D3-211ENST00000502404 SCAF1Q9H7N4 1312 aaKnown RBP21.29■■□□□ 1
UBE2D3-211ENST00000502404 MROH2BQ7Z745 1585 aa21.26■□□□□ 0.99
UBE2D3-211ENST00000502404 LAMC3Q9Y6N6 1575 aa21.21■□□□□ 0.99
UBE2D3-211ENST00000502404 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
UBE2D3-211ENST00000502404 NCBP3Q53F19 620 aaKnown RBP21.1■□□□□ 0.97
UBE2D3-211ENST00000502404 CADPSQ9ULU8 1353 aa21.08■□□□□ 0.96
UBE2D3-211ENST00000502404 THOC2Q8NI27 1593 aaKnown RBP21.06■□□□□ 0.96
UBE2D3-211ENST00000502404 MAPK8IP2Q13387 824 aaPredicted RBP21.01■□□□□ 0.95
UBE2D3-211ENST00000502404 CNKSR2Q8WXI2 1034 aa20.98■□□□□ 0.95
UBE2D3-211ENST00000502404 WIZO95785 1651 aa20.97■□□□□ 0.95
UBE2D3-211ENST00000502404 KIF21AQ7Z4S6 1674 aa20.97■□□□□ 0.95
UBE2D3-211ENST00000502404 MRC2Q9UBG0 1479 aa20.92■□□□□ 0.94
UBE2D3-211ENST00000502404 RSF1Q96T23 1441 aaPredicted RBP20.86■□□□□ 0.93
UBE2D3-211ENST00000502404 CEP164Q9UPV0 1460 aa20.84■□□□□ 0.93
UBE2D3-211ENST00000502404 WDR62O43379 1518 aa20.82■□□□□ 0.92
UBE2D3-211ENST00000502404 NPM3O75607 178 aaKnown RBP20.81■□□□□ 0.92
UBE2D3-211ENST00000502404 FANCD2Q9BXW9 1451 aa20.8■□□□□ 0.92
UBE2D3-211ENST00000502404 CFTRP13569 1480 aa20.79■□□□□ 0.92
UBE2D3-211ENST00000502404 DMRT2Q9Y5R5 561 aa20.76■□□□□ 0.91
UBE2D3-211ENST00000502404 TOP2AP11388 1531 aaKnown RBP20.76■□□□□ 0.91
UBE2D3-211ENST00000502404 OSCARQ8IYS5 282 aa20.6■□□□□ 0.89
UBE2D3-211ENST00000502404 TRIM41Q8WV44 630 aa20.6■□□□□ 0.89
UBE2D3-211ENST00000502404 URB2Q14146 1524 aaKnown RBP20.58■□□□□ 0.88
UBE2D3-211ENST00000502404 RNF216Q9NWF9 866 aaPredicted RBP20.54■□□□□ 0.88
UBE2D3-211ENST00000502404 CCDC88BA6NC98 1476 aa20.54■□□□□ 0.88
UBE2D3-211ENST00000502404 PRDM2Q13029 1718 aa20.47■□□□□ 0.87
UBE2D3-211ENST00000502404 IFT140Q96RY7 1462 aa20.44■□□□□ 0.86
UBE2D3-211ENST00000502404 ABCC8Q09428 1581 aa20.44■□□□□ 0.86
UBE2D3-211ENST00000502404 HOXD11P31277 338 aaPredicted RBP20.42■□□□□ 0.86
UBE2D3-211ENST00000502404 TOPBP1Q92547 1522 aa20.37■□□□□ 0.85
UBE2D3-211ENST00000502404 SLC4A1APQ9BWU0 796 aaKnown RBP20.34■□□□□ 0.85
UBE2D3-211ENST00000502404 ZNF608Q9ULD9 1512 aaPredicted RBP20.32■□□□□ 0.84
UBE2D3-211ENST00000502404 DNMBPQ6XZF7 1577 aa20.29■□□□□ 0.84
UBE2D3-211ENST00000502404 EIF4G3O43432 1585 aaKnown RBP20.19■□□□□ 0.82
UBE2D3-211ENST00000502404 AQRO60306 1485 aaKnown RBP eCLIP20.18■□□□□ 0.822e-7■■■□□ 15.8
UBE2D3-211ENST00000502404 FBLN2P98095 1184 aa20.16■□□□□ 0.82
UBE2D3-211ENST00000502404 POLA1P09884 1462 aaPredicted RBP20.16■□□□□ 0.82
UBE2D3-211ENST00000502404 SOGA1O94964 1423 aa20.15■□□□□ 0.82
UBE2D3-211ENST00000502404 RIMBP3CA6NJZ7 1639 aa20.15■□□□□ 0.82
UBE2D3-211ENST00000502404 RIMBP3BA6NNM3 1639 aa20.15■□□□□ 0.82
UBE2D3-211ENST00000502404 TARBP1Q13395 1621 aaKnown RBP20.15■□□□□ 0.82
UBE2D3-211ENST00000502404 RIMBP3Q9UFD9 1639 aa20.15■□□□□ 0.82
UBE2D3-211ENST00000502404 ARHGEF11O15085 1522 aa20.12■□□□□ 0.81
UBE2D3-211ENST00000502404 RAD54L2Q9Y4B4 1467 aa20.08■□□□□ 0.81
UBE2D3-211ENST00000502404 CYB5RLQ6IPT4 315 aa20.08■□□□□ 0.81
UBE2D3-211ENST00000502404 TDRD9Q8NDG6 1382 aaKnown RBP20.08■□□□□ 0.8
UBE2D3-211ENST00000502404 WDR97A6NE52 1622 aa20.03■□□□□ 0.8
UBE2D3-211ENST00000502404 CHMP7Q8WUX9 453 aaPredicted RBP20.03■□□□□ 0.8
UBE2D3-211ENST00000502404 FGD5Q6ZNL6 1462 aa20.03■□□□□ 0.8
UBE2D3-211ENST00000502404 CHD1O14646 1710 aa20.02■□□□□ 0.8
UBE2D3-211ENST00000502404 SUPT5HO00267 1087 aaKnown RBP19.98■□□□□ 0.79
UBE2D3-211ENST00000502404 CUX1P39880 1505 aa19.97■□□□□ 0.79
UBE2D3-211ENST00000502404 SNAPC4Q5SXM2 1469 aa19.97■□□□□ 0.79
UBE2D3-211ENST00000502404 GRIN2BQ13224 1484 aa19.96■□□□□ 0.79
UBE2D3-211ENST00000502404 MAGI1Q96QZ7 1491 aaPredicted RBP19.96■□□□□ 0.79
UBE2D3-211ENST00000502404 EHMT2Q96KQ7 1210 aa19.93■□□□□ 0.78
UBE2D3-211ENST00000502404 TRHP20396 242 aaPredicted RBP19.91■□□□□ 0.78
UBE2D3-211ENST00000502404 ARAP1Q96P48 1450 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms