Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 TTC31-204ENST00000424122 2806 ntTSL 1 (best)11.9□□□□□ -0.56e-7■■□□□ 12.6
UPF1Q92900 TTC31-202ENST00000410003 3358 ntTSL 1 (best) BASIC10.88□□□□□ -0.676e-7■■□□□ 12.6
UPF1Q92900 TTC31-212ENST00000489152 4025 ntTSL 210.53□□□□□ -0.726e-7■■□□□ 12.6
UPF1Q92900 TTC31-201ENST00000233623 3235 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.776e-7■■□□□ 12.6
UPF1Q92900 TTC31-213ENST00000491252 3860 ntTSL 29.97□□□□□ -0.816e-7■■□□□ 12.6
UPF1Q92900 NEMP1-202ENST00000379391 5370 ntTSL 1 (best) BASIC9.11□□□□□ -0.951e-6■■□□□ 12.6
UPF1Q92900 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.161e-6■■□□□ 12.6
UPF1Q92900 PCYOX1L-203ENST00000505669 2323 ntTSL 1 (best)18.14■□□□□ 0.499e-7■■□□□ 12.6
UPF1Q92900 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.479e-7■■□□□ 12.6
UPF1Q92900 PCYOX1L-206ENST00000511945 2500 ntTSL 1 (best)17.96■□□□□ 0.479e-7■■□□□ 12.6
UPF1Q92900 PCYOX1L-204ENST00000507621 4887 ntTSL 1 (best)13.63□□□□□ -0.239e-7■■□□□ 12.6
UPF1Q92900 PCYOX1L-207ENST00000514349 2793 ntTSL 2 BASIC13.09□□□□□ -0.319e-7■■□□□ 12.6
UPF1Q92900 PCYOX1L-202ENST00000503240 4172 ntTSL 211.25□□□□□ -0.619e-7■■□□□ 12.6
UPF1Q92900 HK1-217ENST00000494253 2848 ntTSL 215.08■□□□□ 08e-9■■□□□ 12.6
UPF1Q92900 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.74■□□□□ 0.431e-8■■□□□ 12.6
UPF1Q92900 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.191e-8■■□□□ 12.6
UPF1Q92900 TRIM27-203ENST00000414543 1813 ntTSL 312.15□□□□□ -0.461e-8■■□□□ 12.6
UPF1Q92900 TRIM27-205ENST00000481474 7006 ntTSL 1 (best)11.49□□□□□ -0.571e-8■■□□□ 12.6
UPF1Q92900 CDC42BPA-203ENST00000366766 10610 ntTSL 5 BASIC11.94□□□□□ -0.52e-6■■□□□ 12.6
UPF1Q92900 CDC42BPA-202ENST00000366764 10445 ntTSL 1 (best) BASIC11.58□□□□□ -0.562e-6■■□□□ 12.6
UPF1Q92900 CDC42BPA-205ENST00000366769 10855 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.682e-6■■□□□ 12.6
UPF1Q92900 CDC42BPA-209ENST00000448940 7355 ntTSL 1 (best)6.77□□□□□ -1.332e-6■■□□□ 12.6
UPF1Q92900 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.25□□□□□ -1.412e-6■■□□□ 12.6
UPF1Q92900 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.26□□□□□ -1.572e-6■■□□□ 12.6
UPF1Q92900 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.651e-8■■□□□ 12.6
UPF1Q92900 RCL1-207ENST00000445485 1878 ntTSL 218.92■□□□□ 0.621e-8■■□□□ 12.6
UPF1Q92900 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC18.27■□□□□ 0.511e-8■■□□□ 12.6
UPF1Q92900 RCL1-208ENST00000448872 1459 ntTSL 1 (best) BASIC15.46■□□□□ 0.071e-8■■□□□ 12.6
UPF1Q92900 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC30.01■■■□□ 2.392e-7■■□□□ 12.6
UPF1Q92900 NEAT1-202ENST00000501122 22743 ntBASIC4.9□□□□□ -1.632e-44■■□□□ 12.6
UPF1Q92900 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.136e-7■■□□□ 12.6
UPF1Q92900 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.839e-7■■□□□ 12.6
UPF1Q92900 PPP1R18-204ENST00000488324 1328 ntTSL 321.26■□□□□ 0.994e-9■■□□□ 12.6
UPF1Q92900 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC19.61■□□□□ 0.734e-9■■□□□ 12.6
UPF1Q92900 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.484e-9■■□□□ 12.6
UPF1Q92900 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.484e-9■■□□□ 12.6
UPF1Q92900 PPP1R18-203ENST00000467662 1156 ntTSL 317.7■□□□□ 0.424e-9■■□□□ 12.6
UPF1Q92900 PPP1R18-202ENST00000399199 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.334e-9■■□□□ 12.6
UPF1Q92900 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC33.79■■■■□ 36e-6■■□□□ 12.6
UPF1Q92900 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.726e-6■■□□□ 12.6
UPF1Q92900 HM13-219ENST00000487964 902 ntTSL 524.54■■□□□ 1.526e-6■■□□□ 12.6
UPF1Q92900 AKAP1-209ENST00000572560 442 ntTSL 324.45■■□□□ 1.56e-6■■□□□ 12.6
UPF1Q92900 HM13-207ENST00000464173 587 ntTSL 218.27■□□□□ 0.526e-6■■□□□ 12.6
UPF1Q92900 HM13-217ENST00000483310 755 ntTSL 317.76■□□□□ 0.436e-6■■□□□ 12.6
UPF1Q92900 HM13-209ENST00000464661 906 ntTSL 316.54■□□□□ 0.246e-6■■□□□ 12.6
UPF1Q92900 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.34■□□□□ 0.214e-11■■□□□ 12.6
UPF1Q92900 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.186e-6■■□□□ 12.6
UPF1Q92900 AKAP1-214ENST00000575032 570 ntTSL 316.02■□□□□ 0.166e-6■■□□□ 12.6
UPF1Q92900 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.082e-8■■□□□ 12.6
UPF1Q92900 HM13-214ENST00000472128 865 ntTSL 514.38□□□□□ -0.116e-6■■□□□ 12.6
UPF1Q92900 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC13.79□□□□□ -0.24e-11■■□□□ 12.6
UPF1Q92900 AKAP1-219ENST00000621116 4285 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.556e-6■■□□□ 12.6
UPF1Q92900 AKAP1-203ENST00000481416 4089 ntTSL 510.08□□□□□ -0.86e-6■■□□□ 12.6
UPF1Q92900 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC19.4■□□□□ 0.73e-14■■□□□ 12.6
UPF1Q92900 CTSH-215ENST00000534237 691 ntTSL 316.27■□□□□ 0.23e-14■■□□□ 12.6
UPF1Q92900 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC30.91■■■□□ 2.549e-12■■□□□ 12.6
UPF1Q92900 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.123e-6■■□□□ 12.6
UPF1Q92900 FAM98A-202ENST00000403368 2818 ntTSL 2 BASIC15.54■□□□□ 0.083e-6■■□□□ 12.6
UPF1Q92900 FAM98A-205ENST00000474985 3546 ntTSL 214.88□□□□□ -0.033e-6■■□□□ 12.6
UPF1Q92900 RNF10-224ENST00000546262 776 ntTSL 424.26■■□□□ 1.471e-6■■□□□ 12.6
UPF1Q92900 C22orf39-202ENST00000399562 3350 ntTSL 1 (best) BASIC12.04□□□□□ -0.482e-8■■□□□ 12.5
UPF1Q92900 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.657e-7■■□□□ 12.5
UPF1Q92900 DDAH2-217ENST00000469963 1682 ntTSL 526.96■■□□□ 1.917e-7■■□□□ 12.5
UPF1Q92900 DDAH2-218ENST00000480913 937 ntTSL 526.71■■□□□ 1.877e-7■■□□□ 12.5
UPF1Q92900 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.817e-7■■□□□ 12.5
UPF1Q92900 DDAH2-219ENST00000483792 898 ntTSL 518.34■□□□□ 0.537e-7■■□□□ 12.5
UPF1Q92900 DDAH2-216ENST00000437288 724 ntTSL 517.45■□□□□ 0.387e-7■■□□□ 12.5
UPF1Q92900 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.842e-7■■□□□ 12.5
UPF1Q92900 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.147e-6■■□□□ 12.5
UPF1Q92900 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.02■□□□□ 0.647e-6■■□□□ 12.5
UPF1Q92900 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.25■□□□□ 0.512e-9■■□□□ 12.5
UPF1Q92900 SH3D21-202ENST00000474766 2043 ntTSL 1 (best)26.06■■□□□ 1.762e-6■■□□□ 12.5
UPF1Q92900 SEPT5-212ENST00000470814 2353 ntTSL 522.32■■□□□ 1.164e-7■■□□□ 12.5
UPF1Q92900 SEPT5-211ENST00000455843 4113 ntTSL 1 (best)15.17■□□□□ 0.024e-7■■□□□ 12.5
UPF1Q92900 CCDC162P-215ENST00000640771 4195 ntTSL 58.69□□□□□ -1.021e-11■■□□□ 12.5
UPF1Q92900 CCDC162P-206ENST00000453496 2469 ntTSL 58.42□□□□□ -1.061e-11■■□□□ 12.5
UPF1Q92900 CCDC162P-202ENST00000368966 6751 ntBASIC7.99□□□□□ -1.131e-11■■□□□ 12.5
UPF1Q92900 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.072e-7■■□□□ 12.5
UPF1Q92900 MDM2-231ENST00000544125 649 ntTSL 210.87□□□□□ -0.672e-9■■□□□ 12.5
UPF1Q92900 MDM2-227ENST00000540709 502 ntTSL 310.14□□□□□ -0.792e-9■■□□□ 12.5
UPF1Q92900 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.082e-9■■□□□ 12.5
UPF1Q92900 STK25-222ENST00000465009 871 ntTSL 225.22■■□□□ 1.631e-7■■□□□ 12.5
UPF1Q92900 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC26.42■■□□□ 1.823e-6■■□□□ 12.5
UPF1Q92900 RTN4-215ENST00000491592 860 ntTSL 29.35□□□□□ -0.913e-6■■□□□ 12.5
UPF1Q92900 RTN4-213ENST00000485749 832 ntTSL 28.27□□□□□ -1.093e-6■■□□□ 12.5
UPF1Q92900 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.012e-6■■□□□ 12.5
UPF1Q92900 IQGAP1-215ENST00000561086 2871 ntTSL 25.07□□□□□ -1.62e-6■■□□□ 12.5
UPF1Q92900 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.432e-7■■□□□ 12.5
UPF1Q92900 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.822e-7■■□□□ 12.5
UPF1Q92900 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.512e-7■■□□□ 12.5
UPF1Q92900 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC19.23■□□□□ 0.671e-6■■□□□ 12.5
UPF1Q92900 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.041e-6■■□□□ 12.5
UPF1Q92900 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC7.95□□□□□ -1.141e-6■■□□□ 12.5
UPF1Q92900 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.452e-6■■□□□ 12.5
UPF1Q92900 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC24.87■■□□□ 1.571e-13■■□□□ 12.5
UPF1Q92900 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC24.45■■□□□ 1.511e-13■■□□□ 12.5
UPF1Q92900 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.121e-13■■□□□ 12.5
UPF1Q92900 SUMF2-209ENST00000436782 1683 ntTSL 1 (best)21.92■■□□□ 1.11e-13■■□□□ 12.5
UPF1Q92900 SUMF2-211ENST00000438133 1771 ntTSL 1 (best)18.35■□□□□ 0.531e-13■■□□□ 12.5
UPF1Q92900 SUMF2-207ENST00000423763 1792 ntTSL 216.93■□□□□ 0.31e-13■■□□□ 12.5
Retrieved 100 of 15,879 protein–RNA pairs in 85.9 ms