RNA–Protein interactions for RNA: ENST00000366766.6

CDC42BPA-203, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,610 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-203ENST00000366766 NISCHQ9Y2I1 1504 aa20.78■□□□□ 0.92
CDC42BPA-203ENST00000366766 DCAF8L2P0C7V8 631 aa20.12■□□□□ 0.81
CDC42BPA-203ENST00000366766 SUPT5HO00267 1087 aaKnown RBP19.43■□□□□ 0.7
CDC42BPA-203ENST00000366766 SHROOM4Q9ULL8 1493 aa19.09■□□□□ 0.65
CDC42BPA-203ENST00000366766 PELP1Q8IZL8 1130 aaKnown RBP19.04■□□□□ 0.64
CDC42BPA-203ENST00000366766 APLP2Q06481 763 aa18.78■□□□□ 0.6
CDC42BPA-203ENST00000366766 ZEB1P37275 1124 aaPredicted RBP18.65■□□□□ 0.58
CDC42BPA-203ENST00000366766 FAM9AQ8IZU1 332 aaPredicted RBP18.56■□□□□ 0.56
CDC42BPA-203ENST00000366766 CENPBP07199 599 aaPredicted RBP18.34■□□□□ 0.53
CDC42BPA-203ENST00000366766 PCGF6Q9BYE7 350 aa18.32■□□□□ 0.52
CDC42BPA-203ENST00000366766 TRIM41Q8WV44 630 aa18.31■□□□□ 0.52
CDC42BPA-203ENST00000366766 EHMT2Q96KQ7 1210 aa18.21■□□□□ 0.51
CDC42BPA-203ENST00000366766 CCER1Q8TC90 406 aaPredicted RBP18.12■□□□□ 0.49
CDC42BPA-203ENST00000366766 MYT1Q01538 1121 aa18.11■□□□□ 0.49
CDC42BPA-203ENST00000366766 UBTFP17480 764 aaKnown RBP17.96■□□□□ 0.47
CDC42BPA-203ENST00000366766 TRIM26Q12899 539 aaPredicted RBP17.94■□□□□ 0.46
CDC42BPA-203ENST00000366766 NEFLP07196 543 aa17.82■□□□□ 0.44
CDC42BPA-203ENST00000366766 ERICH6Q7L0X2 663 aa17.78■□□□□ 0.44
CDC42BPA-203ENST00000366766 TTBK1Q5TCY1 1321 aaPredicted RBP17.74■□□□□ 0.43
CDC42BPA-203ENST00000366766 HRCP23327 699 aa17.72■□□□□ 0.43
CDC42BPA-203ENST00000366766 CCDC180Q9P1Z9 1646 aa17.69■□□□□ 0.42
CDC42BPA-203ENST00000366766 CHIC1Q5VXU3 224 aa17.65■□□□□ 0.42
CDC42BPA-203ENST00000366766 ATP1B4Q9UN42 357 aaPredicted RBP17.6■□□□□ 0.41
CDC42BPA-203ENST00000366766 RANGAP1P46060 587 aaPredicted RBP17.58■□□□□ 0.4
CDC42BPA-203ENST00000366766 YTHDC1Q96MU7 727 aaKnown RBP17.32■□□□□ 0.36
CDC42BPA-203ENST00000366766 ZCCHC6Q5VYS8 1495 aaKnown RBP17.3■□□□□ 0.36
CDC42BPA-203ENST00000366766 LOC105371045A0A1W2PR82 267 aa17.26■□□□□ 0.35
CDC42BPA-203ENST00000366766 DAXXQ9UER7 740 aaPredicted RBP17.2■□□□□ 0.34
CDC42BPA-203ENST00000366766 PPARGC1BQ86YN6 1023 aaKnown RBP17.17■□□□□ 0.34
CDC42BPA-203ENST00000366766 ABCC9O60706 1549 aa17.16■□□□□ 0.34
CDC42BPA-203ENST00000366766 DIEXFQ68CQ4 756 aaKnown RBP17.16■□□□□ 0.34
CDC42BPA-203ENST00000366766 HNRNPUL2Q1KMD3 747 aaKnown RBP17.12■□□□□ 0.33
CDC42BPA-203ENST00000366766 DCAF1Q9Y4B6 1507 aa17.12■□□□□ 0.33
CDC42BPA-203ENST00000366766 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.07■□□□□ 0.32
CDC42BPA-203ENST00000366766 ITGAEP38570 1179 aa17.07■□□□□ 0.32
CDC42BPA-203ENST00000366766 CLSPNQ9HAW4 1339 aa17.05■□□□□ 0.32
CDC42BPA-203ENST00000366766 SCRIBQ14160 1630 aa17.02■□□□□ 0.32
CDC42BPA-203ENST00000366766 FAM50AQ14320 339 aaKnown RBP16.89■□□□□ 0.29
CDC42BPA-203ENST00000366766 MYT1LQ9UL68 1186 aa16.88■□□□□ 0.29
CDC42BPA-203ENST00000366766 RTL5Q5HYW3 569 aaPredicted RBP16.87■□□□□ 0.29
CDC42BPA-203ENST00000366766 ANP32CO43423 234 aa16.85■□□□□ 0.29
CDC42BPA-203ENST00000366766 CSRNP3Q8WYN3 585 aa16.85■□□□□ 0.29
CDC42BPA-203ENST00000366766 RB1CC1Q8TDY2 1594 aa16.85■□□□□ 0.29
CDC42BPA-203ENST00000366766 POLR3GLQ9BT43 218 aa16.84■□□□□ 0.29
CDC42BPA-203ENST00000366766 ZNF316A6NFI3 1004 aaPredicted RBP16.84■□□□□ 0.29
CDC42BPA-203ENST00000366766 NACADO15069 1562 aa16.83■□□□□ 0.28
CDC42BPA-203ENST00000366766 EEA1Q15075 1411 aa16.79■□□□□ 0.28
CDC42BPA-203ENST00000366766 PABPN1Q86U42 306 aaKnown RBP eCLIP16.74■□□□□ 0.27
CDC42BPA-203ENST00000366766 TRIM52Q96A61 297 aa16.74■□□□□ 0.27
CDC42BPA-203ENST00000366766 ACIN1Q9UKV3 1341 aaKnown RBP16.73■□□□□ 0.27
CDC42BPA-203ENST00000366766 CDK11AQ9UQ88 783 aaPredicted RBP16.71■□□□□ 0.27
CDC42BPA-203ENST00000366766 GTF3C3Q9Y5Q9 886 aa16.64■□□□□ 0.25
CDC42BPA-203ENST00000366766 NEUROD1Q13562 356 aa16.63■□□□□ 0.25
CDC42BPA-203ENST00000366766 SLC4A1APQ9BWU0 796 aaKnown RBP16.55■□□□□ 0.24
CDC42BPA-203ENST00000366766 TONSLQ96HA7 1378 aa16.55■□□□□ 0.24
CDC42BPA-203ENST00000366766 BAZ1AQ9NRL2 1556 aaPredicted RBP16.52■□□□□ 0.24
CDC42BPA-203ENST00000366766 GOLGA3Q08378 1498 aa16.52■□□□□ 0.23
CDC42BPA-203ENST00000366766 ZBTB47Q9UFB7 747 aaPredicted RBP16.51■□□□□ 0.23
CDC42BPA-203ENST00000366766 CLIP1P30622 1438 aa16.49■□□□□ 0.23
CDC42BPA-203ENST00000366766 NEFMP07197 916 aa16.48■□□□□ 0.23
CDC42BPA-203ENST00000366766 ANP32AP39687 249 aaKnown RBP16.46■□□□□ 0.23
CDC42BPA-203ENST00000366766 RSF1Q96T23 1441 aaPredicted RBP16.44■□□□□ 0.22
CDC42BPA-203ENST00000366766 ZNF326Q5BKZ1 582 aaKnown RBP16.42■□□□□ 0.22
CDC42BPA-203ENST00000366766 CNGB1Q14028 1251 aaPredicted RBP16.41■□□□□ 0.22
CDC42BPA-203ENST00000366766 CEP164Q9UPV0 1460 aa16.41■□□□□ 0.22
CDC42BPA-203ENST00000366766 CANXP27824 592 aaKnown RBP16.38■□□□□ 0.21
CDC42BPA-203ENST00000366766 BAZ1BQ9UIG0 1483 aaKnown RBP16.36■□□□□ 0.21
CDC42BPA-203ENST00000366766 CEP162Q5TB80 1403 aa16.35■□□□□ 0.21
CDC42BPA-203ENST00000366766 MYO15BQ96JP2 1530 aa16.34■□□□□ 0.21
CDC42BPA-203ENST00000366766 FBLN2P98095 1184 aa16.34■□□□□ 0.21
CDC42BPA-203ENST00000366766 WRNQ14191 1432 aaPredicted RBP eCLIP16.33■□□□□ 0.2
CDC42BPA-203ENST00000366766 MTUS2Q5JR59 1369 aa16.33■□□□□ 0.2
CDC42BPA-203ENST00000366766 TNIKQ9UKE5 1360 aa16.32■□□□□ 0.2
CDC42BPA-203ENST00000366766 KIF27Q86VH2 1401 aa16.31■□□□□ 0.2
CDC42BPA-203ENST00000366766 BCANQ96GW7 911 aa16.28■□□□□ 0.2
CDC42BPA-203ENST00000366766 P3H3Q8IVL6 736 aa16.26■□□□□ 0.19
CDC42BPA-203ENST00000366766 UPF2Q9HAU5 1272 aaKnown RBP16.25■□□□□ 0.19
CDC42BPA-203ENST00000366766 FHAD1B1AJZ9 1412 aa16.22■□□□□ 0.19
CDC42BPA-203ENST00000366766 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.22■□□□□ 0.19
CDC42BPA-203ENST00000366766 HNRNPUQ00839 825 aaKnown RBP eCLIP16.19■□□□□ 0.18
CDC42BPA-203ENST00000366766 ZNF777Q9ULD5 760 aaPredicted RBP16.19■□□□□ 0.18
CDC42BPA-203ENST00000366766 ANP32BQ92688 251 aaKnown RBP16.18■□□□□ 0.18
CDC42BPA-203ENST00000366766 SMARCA2P51531 1590 aa16.18■□□□□ 0.18
CDC42BPA-203ENST00000366766 TSPY4P0CV99 314 aa16.17■□□□□ 0.18
CDC42BPA-203ENST00000366766 TSPY10P0CW01 314 aa16.17■□□□□ 0.18
CDC42BPA-203ENST00000366766 FKBP8Q14318 412 aa16.14■□□□□ 0.17
CDC42BPA-203ENST00000366766 TMC1Q8TDI8 760 aa16.14■□□□□ 0.17
CDC42BPA-203ENST00000366766 EIF4G2P78344 907 aaKnown RBP eCLIP16.12■□□□□ 0.17
CDC42BPA-203ENST00000366766 DDX10Q13206 875 aaKnown RBP16.11■□□□□ 0.17
CDC42BPA-203ENST00000366766 ESF1Q9H501 851 aaKnown RBP16.09■□□□□ 0.17
CDC42BPA-203ENST00000366766 TIMELESSQ9UNS1 1208 aa16.09■□□□□ 0.17
CDC42BPA-203ENST00000366766 NPM1P06748 294 aaKnown RBP eCLIP16.08■□□□□ 0.17
CDC42BPA-203ENST00000366766 CCDC136Q96JN2 1154 aa16.07■□□□□ 0.16
CDC42BPA-203ENST00000366766 EIF5BO60841 1220 aaKnown RBP16.06■□□□□ 0.16
CDC42BPA-203ENST00000366766 SLC24A1O60721 1099 aa16.06■□□□□ 0.16
CDC42BPA-203ENST00000366766 CDCA8Q53HL2 280 aa16.05■□□□□ 0.16
CDC42BPA-203ENST00000366766 HSP90AA1P07900 732 aaKnown RBP16.05■□□□□ 0.16
CDC42BPA-203ENST00000366766 MRS2Q9HD23 443 aa16.05■□□□□ 0.16
CDC42BPA-203ENST00000366766 WDR43Q15061 677 aaKnown RBP eCLIP16.04■□□□□ 0.16
CDC42BPA-203ENST00000366766 TOP2AP11388 1531 aaKnown RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms