RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 MYT1Q01538 1121 aa11.07□□□□□ -0.64
CDC42BPA-201ENST00000334218 PELP1Q8IZL8 1130 aaKnown RBP10.58□□□□□ -0.72
CDC42BPA-201ENST00000334218 TTBK1Q5TCY1 1321 aaPredicted RBP10.33□□□□□ -0.76
CDC42BPA-201ENST00000334218 ERICH6Q7L0X2 663 aa10.04□□□□□ -0.8
CDC42BPA-201ENST00000334218 YTHDC1Q96MU7 727 aaKnown RBP10.04□□□□□ -0.8
CDC42BPA-201ENST00000334218 RANGAP1P46060 587 aaPredicted RBP10□□□□□ -0.81
CDC42BPA-201ENST00000334218 CCER1Q8TC90 406 aaPredicted RBP9.78□□□□□ -0.84
CDC42BPA-201ENST00000334218 SLC24A1O60721 1099 aa9.49□□□□□ -0.89
CDC42BPA-201ENST00000334218 EHMT2Q96KQ7 1210 aa9.48□□□□□ -0.89
CDC42BPA-201ENST00000334218 NISCHQ9Y2I1 1504 aa9.47□□□□□ -0.89
CDC42BPA-201ENST00000334218 DCAF8L2P0C7V8 631 aa9.43□□□□□ -0.9
CDC42BPA-201ENST00000334218 GLIPR1L2Q4G1C9 344 aa9.42□□□□□ -0.9
CDC42BPA-201ENST00000334218 CENPBP07199 599 aaPredicted RBP9.3□□□□□ -0.92
CDC42BPA-201ENST00000334218 POLR3GLQ9BT43 218 aa9.26□□□□□ -0.93
CDC42BPA-201ENST00000334218 CLSPNQ9HAW4 1339 aa9.14□□□□□ -0.95
CDC42BPA-201ENST00000334218 MYT1LQ9UL68 1186 aa9.08□□□□□ -0.96
CDC42BPA-201ENST00000334218 RTL5Q5HYW3 569 aaPredicted RBP9.07□□□□□ -0.96
CDC42BPA-201ENST00000334218 FAM9AQ8IZU1 332 aaPredicted RBP9.02□□□□□ -0.97
CDC42BPA-201ENST00000334218 ZEB1P37275 1124 aaPredicted RBP8.97□□□□□ -0.97
CDC42BPA-201ENST00000334218 NEFLP07196 543 aa8.93□□□□□ -0.98
CDC42BPA-201ENST00000334218 NCLP19338 710 aaKnown RBP8.91□□□□□ -0.98
CDC42BPA-201ENST00000334218 DAXXQ9UER7 740 aaPredicted RBP8.9□□□□□ -0.98
CDC42BPA-201ENST00000334218 HMGB1P09429 215 aaKnown RBP8.9□□□□□ -0.98
CDC42BPA-201ENST00000334218 ZNF326Q5BKZ1 582 aaKnown RBP8.89□□□□□ -0.99
CDC42BPA-201ENST00000334218 EIF5BO60841 1220 aaKnown RBP8.83□□□□□ -1
CDC42BPA-201ENST00000334218 TNNT2P45379 298 aaPredicted RBP8.8□□□□□ -1
CDC42BPA-201ENST00000334218 PTMSP20962 102 aa8.78□□□□□ -1
CDC42BPA-201ENST00000334218 ATP1B4Q9UN42 357 aaPredicted RBP8.73□□□□□ -1.01
CDC42BPA-201ENST00000334218 AMER1Q5JTC6 1135 aaPredicted RBP8.72□□□□□ -1.01
CDC42BPA-201ENST00000334218 TRIM44Q96DX7 344 aaPredicted RBP8.71□□□□□ -1.02
CDC42BPA-201ENST00000334218 HOMEZQ8IX15 550 aa8.65□□□□□ -1.03
CDC42BPA-201ENST00000334218 ZNF316A6NFI3 1004 aaPredicted RBP8.64□□□□□ -1.03
CDC42BPA-201ENST00000334218 CNGB1Q14028 1251 aaPredicted RBP8.63□□□□□ -1.03
CDC42BPA-201ENST00000334218 CDK11BP21127 795 aaKnown RBP8.63□□□□□ -1.03
CDC42BPA-201ENST00000334218 CDK11AQ9UQ88 783 aaPredicted RBP8.63□□□□□ -1.03
CDC42BPA-201ENST00000334218 ANP32BQ92688 251 aaKnown RBP8.57□□□□□ -1.04
CDC42BPA-201ENST00000334218 CALRP27797 417 aaKnown RBP8.52□□□□□ -1.05
CDC42BPA-201ENST00000334218 ARXQ96QS3 562 aa8.47□□□□□ -1.05
CDC42BPA-201ENST00000334218 LAS1LQ9Y4W2 734 aaKnown RBP8.45□□□□□ -1.06
CDC42BPA-201ENST00000334218 BCANQ96GW7 911 aa8.44□□□□□ -1.06
CDC42BPA-201ENST00000334218 ANP32AP39687 249 aaKnown RBP8.44□□□□□ -1.06
CDC42BPA-201ENST00000334218 HMGB1P1B2RPK0 211 aaPredicted RBP8.43□□□□□ -1.06
CDC42BPA-201ENST00000334218 HAP1P54257 671 aaPredicted RBP8.43□□□□□ -1.06
CDC42BPA-201ENST00000334218 C14orf37Q86TY3 774 aa8.42□□□□□ -1.06
CDC42BPA-201ENST00000334218 ANP32EQ9BTT0 268 aa8.37□□□□□ -1.07
CDC42BPA-201ENST00000334218 ARID4BQ4LE39 1312 aaPredicted RBP8.37□□□□□ -1.07
CDC42BPA-201ENST00000334218 ABCC9O60706 1549 aa8.34□□□□□ -1.07
CDC42BPA-201ENST00000334218 NCBP3Q53F19 620 aaKnown RBP8.32□□□□□ -1.08
CDC42BPA-201ENST00000334218 ERICH6BQ5W0A0 696 aa8.32□□□□□ -1.08
CDC42BPA-201ENST00000334218 PODXL2Q9NZ53 605 aa8.32□□□□□ -1.08
CDC42BPA-201ENST00000334218 A0A0U1RQG5 324 aaPredicted RBP8.3□□□□□ -1.08
CDC42BPA-201ENST00000334218 NPM2Q86SE8 214 aaKnown RBP8.29□□□□□ -1.08
CDC42BPA-201ENST00000334218 SUPT5HO00267 1087 aaKnown RBP8.28□□□□□ -1.08
CDC42BPA-201ENST00000334218 NBR1Q14596 966 aa8.27□□□□□ -1.09
CDC42BPA-201ENST00000334218 NEFMP07197 916 aa8.25□□□□□ -1.09
CDC42BPA-201ENST00000334218 PNNQ9H307 717 aaKnown RBP8.24□□□□□ -1.09
CDC42BPA-201ENST00000334218 STK11IPQ8N1F8 1099 aa8.23□□□□□ -1.09
CDC42BPA-201ENST00000334218 SHROOM4Q9ULL8 1493 aa8.23□□□□□ -1.09
CDC42BPA-201ENST00000334218 APPP05067 770 aa8.22□□□□□ -1.09
CDC42BPA-201ENST00000334218 ZBTB7CA1YPR0 619 aa8.21□□□□□ -1.09
CDC42BPA-201ENST00000334218 APLP2Q06481 763 aa8.21□□□□□ -1.1
CDC42BPA-201ENST00000334218 HSP90B1P14625 803 aaKnown RBP8.21□□□□□ -1.1
CDC42BPA-201ENST00000334218 GOLGA6L22H0YM25 854 aa8.2□□□□□ -1.1
CDC42BPA-201ENST00000334218 NEFHP12036 1026 aa8.2□□□□□ -1.1
CDC42BPA-201ENST00000334218 BCL11AQ9H165 835 aa8.19□□□□□ -1.1
CDC42BPA-201ENST00000334218 NAP1L5Q96NT1 182 aaPredicted RBP8.18□□□□□ -1.1
CDC42BPA-201ENST00000334218 PTMAP06454 111 aaKnown RBP8.17□□□□□ -1.1
CDC42BPA-201ENST00000334218 KAT6BQ8WYB5 2073 aa8.16□□□□□ -1.1
CDC42BPA-201ENST00000334218 TNNT3P45378 269 aaPredicted RBP8.15□□□□□ -1.1
CDC42BPA-201ENST00000334218 USP35Q9P2H5 1018 aa8.15□□□□□ -1.1
CDC42BPA-201ENST00000334218 TULP1O00294 542 aaPredicted RBP8.14□□□□□ -1.11
CDC42BPA-201ENST00000334218 GOLGA6L6A8MZA4 724 aa8.13□□□□□ -1.11
CDC42BPA-201ENST00000334218 FBXO3Q9UK99 471 aa8.12□□□□□ -1.11
CDC42BPA-201ENST00000334218 PPM1GO15355 546 aaPredicted RBP8.12□□□□□ -1.11
CDC42BPA-201ENST00000334218 ZBTB47Q9UFB7 747 aaPredicted RBP8.12□□□□□ -1.11
CDC42BPA-201ENST00000334218 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.11□□□□□ -1.11
CDC42BPA-201ENST00000334218 TPRNQ4KMQ1 711 aa8.1□□□□□ -1.11
CDC42BPA-201ENST00000334218 CCDC9Q9Y3X0 531 aaKnown RBP8.1□□□□□ -1.11
CDC42BPA-201ENST00000334218 SETQ01105 290 aaPredicted RBP8.09□□□□□ -1.11
CDC42BPA-201ENST00000334218 CCDC180Q9P1Z9 1646 aa8.09□□□□□ -1.11
CDC42BPA-201ENST00000334218 CHIC1Q5VXU3 224 aa8.09□□□□□ -1.11
CDC42BPA-201ENST00000334218 HRCP23327 699 aa8.07□□□□□ -1.12
CDC42BPA-201ENST00000334218 GOLGA6L1Q8N7Z2 621 aa8.07□□□□□ -1.12
CDC42BPA-201ENST00000334218 HSP90AA1P07900 732 aaKnown RBP8.07□□□□□ -1.12
CDC42BPA-201ENST00000334218 PABPN1Q86U42 306 aaKnown RBP eCLIP8.06□□□□□ -1.12
CDC42BPA-201ENST00000334218 RSPH6AQ9H0K4 717 aa8.06□□□□□ -1.12
CDC42BPA-201ENST00000334218 GOLGA6L3A6NEY3 463 aa8.04□□□□□ -1.12
CDC42BPA-201ENST00000334218 LMOD2Q6P5Q4 547 aa8.04□□□□□ -1.12
CDC42BPA-201ENST00000334218 TAF7LQ5H9L4 462 aa8.04□□□□□ -1.12
CDC42BPA-201ENST00000334218 PCGF6Q9BYE7 350 aa8.04□□□□□ -1.12
CDC42BPA-201ENST00000334218 ANP32CO43423 234 aa8.03□□□□□ -1.12
CDC42BPA-201ENST00000334218 CHAF1AQ13111 956 aaPredicted RBP8.03□□□□□ -1.12
CDC42BPA-201ENST00000334218 HSP90AA2PQ14568 343 aaPredicted RBP8.02□□□□□ -1.12
CDC42BPA-201ENST00000334218 PSMD1Q99460 953 aa8.02□□□□□ -1.13
CDC42BPA-201ENST00000334218 PKNOX2Q96KN3 472 aa8.01□□□□□ -1.13
CDC42BPA-201ENST00000334218 RTN4Q9NQC3 1192 aaKnown RBP8.01□□□□□ -1.13
CDC42BPA-201ENST00000334218 L1TD1Q5T7N2 865 aaKnown RBP8.01□□□□□ -1.13
CDC42BPA-201ENST00000334218 TAF3Q5VWG9 929 aa8.01□□□□□ -1.13
CDC42BPA-201ENST00000334218 UPF2Q9HAU5 1272 aaKnown RBP8.01□□□□□ -1.13
CDC42BPA-201ENST00000334218 RB1CC1Q8TDY2 1594 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms