RNA–Protein interactions for RNA: ENST00000402434.6

RTN4-207, Transcript of reticulon 4, humanhuman

TSL 5 BASIC

Gene RTN4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-207ENST00000402434 NISCHQ9Y2I1 1504 aa46.68■■■■■ 5.06
RTN4-207ENST00000402434 CCDC180Q9P1Z9 1646 aa41.45■■■■■ 4.23
RTN4-207ENST00000402434 ABCC9O60706 1549 aa40.55■■■■■ 4.08
RTN4-207ENST00000402434 RB1CC1Q8TDY2 1594 aa39.02■■■■□ 3.84
RTN4-207ENST00000402434 NACADO15069 1562 aa39■■■■□ 3.83
RTN4-207ENST00000402434 DCAF8L2P0C7V8 631 aa38.96■■■■□ 3.83
RTN4-207ENST00000402434 ZCCHC6Q5VYS8 1495 aaKnown RBP38.87■■■■□ 3.81
RTN4-207ENST00000402434 MYO15BQ96JP2 1530 aa38.83■■■■□ 3.81
RTN4-207ENST00000402434 DCAF1Q9Y4B6 1507 aa38.65■■■■□ 3.78
RTN4-207ENST00000402434 UNC13AQ9UPW8 1703 aa38.1■■■■□ 3.69
RTN4-207ENST00000402434 PABPN1Q86U42 306 aaKnown RBP eCLIP37.92■■■■□ 3.66
RTN4-207ENST00000402434 BICRAQ9NZM4 1560 aa37.86■■■■□ 3.65
RTN4-207ENST00000402434 SCRIBQ14160 1630 aa37.79■■■■□ 3.64
RTN4-207ENST00000402434 SHROOM4Q9ULL8 1493 aa37.49■■■■□ 3.59
RTN4-207ENST00000402434 DNAJC5BQ9UF47 199 aa37.29■■■■□ 3.56
RTN4-207ENST00000402434 EIF4G1Q04637 1599 aaKnown RBP36.85■■■■□ 3.49
RTN4-207ENST00000402434 CC2D2AQ9P2K1 1620 aa36.68■■■■□ 3.46
RTN4-207ENST00000402434 CECR2Q9BXF3 1484 aa36.45■■■■□ 3.43
RTN4-207ENST00000402434 SMARCA4P51532 1647 aa36.18■■■■□ 3.38
RTN4-207ENST00000402434 BAZ1AQ9NRL2 1556 aaPredicted RBP36.16■■■■□ 3.38
RTN4-207ENST00000402434 NCAPD3P42695 1498 aa36.03■■■■□ 3.36
RTN4-207ENST00000402434 ATAD2BQ9ULI0 1458 aa36.02■■■■□ 3.36
RTN4-207ENST00000402434 SMARCA2P51531 1590 aa35.96■■■■□ 3.35
RTN4-207ENST00000402434 MROH2BQ7Z745 1585 aa35.96■■■■□ 3.35
RTN4-207ENST00000402434 PEG3Q9GZU2 1588 aa35.88■■■■□ 3.33
RTN4-207ENST00000402434 HMGXB3Q12766 1538 aa35.81■■■■□ 3.32
RTN4-207ENST00000402434 BAZ1BQ9UIG0 1483 aaKnown RBP35.69■■■■□ 3.3
RTN4-207ENST00000402434 RSF1Q96T23 1441 aaPredicted RBP35.58■■■■□ 3.29
RTN4-207ENST00000402434 WIZO95785 1651 aa35.54■■■■□ 3.28
RTN4-207ENST00000402434 TOP2AP11388 1531 aaKnown RBP35.18■■■■□ 3.22
RTN4-207ENST00000402434 NESP48681 1621 aa35.11■■■■□ 3.21
RTN4-207ENST00000402434 LAMC3Q9Y6N6 1575 aa35.03■■■■□ 3.2
RTN4-207ENST00000402434 CADPSQ9ULU8 1353 aa34.97■■■■□ 3.19
RTN4-207ENST00000402434 ERCC6Q03468 1493 aa34.93■■■■□ 3.18
RTN4-207ENST00000402434 PDS5BQ9NTI5 1447 aa34.81■■■■□ 3.16
RTN4-207ENST00000402434 CCDC88BA6NC98 1476 aa34.8■■■■□ 3.16
RTN4-207ENST00000402434 CFTRP13569 1480 aa34.77■■■■□ 3.16
RTN4-207ENST00000402434 SUPT5HO00267 1087 aaKnown RBP34.65■■■■□ 3.14
RTN4-207ENST00000402434 KIF21AQ7Z4S6 1674 aa34.64■■■■□ 3.14
RTN4-207ENST00000402434 CUX2O14529 1486 aa34.6■■■■□ 3.13
RTN4-207ENST00000402434 THOC2Q8NI27 1593 aaKnown RBP34.55■■■■□ 3.12
RTN4-207ENST00000402434 FANCD2Q9BXW9 1451 aa34.53■■■■□ 3.12
RTN4-207ENST00000402434 CEP164Q9UPV0 1460 aa34.47■■■■□ 3.11
RTN4-207ENST00000402434 MRC2Q9UBG0 1479 aa34.43■■■■□ 3.1
RTN4-207ENST00000402434 PRDM2Q13029 1718 aa34.41■■■■□ 3.1
RTN4-207ENST00000402434 WDR62O43379 1518 aa34.32■■■■□ 3.08
RTN4-207ENST00000402434 URB2Q14146 1524 aaKnown RBP34.18■■■■□ 3.06
RTN4-207ENST00000402434 ABCC8Q09428 1581 aa34■■■■□ 3.03
RTN4-207ENST00000402434 TOPBP1Q92547 1522 aa33.98■■■■□ 3.03
RTN4-207ENST00000402434 DNMBPQ6XZF7 1577 aa33.93■■■■□ 3.02
RTN4-207ENST00000402434 IFT140Q96RY7 1462 aa33.77■■■■□ 3
RTN4-207ENST00000402434 CUX1P39880 1505 aa33.73■■■□□ 2.99
RTN4-207ENST00000402434 POLA1P09884 1462 aaPredicted RBP33.7■■■□□ 2.99
RTN4-207ENST00000402434 TARBP1Q13395 1621 aaKnown RBP33.61■■■□□ 2.97
RTN4-207ENST00000402434 ZNF608Q9ULD9 1512 aaPredicted RBP33.61■■■□□ 2.97
RTN4-207ENST00000402434 FGD5Q6ZNL6 1462 aa33.61■■■□□ 2.97
RTN4-207ENST00000402434 DNAJC5Q9H3Z4 198 aa33.59■■■□□ 2.97
RTN4-207ENST00000402434 SOGA1O94964 1423 aa33.57■■■□□ 2.97
RTN4-207ENST00000402434 RAD54L2Q9Y4B4 1467 aa33.54■■■□□ 2.96
RTN4-207ENST00000402434 WRNQ14191 1432 aaPredicted RBP eCLIP33.53■■■□□ 2.96
RTN4-207ENST00000402434 TOP2BQ02880 1626 aa33.44■■■□□ 2.94
RTN4-207ENST00000402434 EIF4G3O43432 1585 aaKnown RBP33.44■■■□□ 2.94
RTN4-207ENST00000402434 AQRO60306 1485 aaKnown RBP eCLIP33.44■■■□□ 2.947e-8■■■■■ 28.3
RTN4-207ENST00000402434 BIVM-ERCC5R4GMW8 1640 aa33.42■■■□□ 2.94
RTN4-207ENST00000402434 SYNJ1O43426 1573 aa33.41■■■□□ 2.94
RTN4-207ENST00000402434 TDRD9Q8NDG6 1382 aaKnown RBP33.38■■■□□ 2.93
RTN4-207ENST00000402434 WDR97A6NE52 1622 aa33.34■■■□□ 2.93
RTN4-207ENST00000402434 ABCA10Q8WWZ4 1543 aa33.31■■■□□ 2.92
RTN4-207ENST00000402434 OSCARQ8IYS5 282 aa33.21■■■□□ 2.91
RTN4-207ENST00000402434 GAPVD1Q14C86 1478 aa33.18■■■□□ 2.9
RTN4-207ENST00000402434 GRIN2BQ13224 1484 aa33.17■■■□□ 2.9
RTN4-207ENST00000402434 ABCA5Q8WWZ7 1642 aa33.14■■■□□ 2.9
RTN4-207ENST00000402434 SNAPC4Q5SXM2 1469 aa33.09■■■□□ 2.89
RTN4-207ENST00000402434 MAGI1Q96QZ7 1491 aaPredicted RBP33.09■■■□□ 2.89
RTN4-207ENST00000402434 PBRM1Q86U86 1689 aa33.03■■■□□ 2.88
RTN4-207ENST00000402434 FBLN2P98095 1184 aa33■■■□□ 2.87
RTN4-207ENST00000402434 CHD1O14646 1710 aa33■■■□□ 2.87
RTN4-207ENST00000402434 SYNJ2O15056 1496 aa32.96■■■□□ 2.87
RTN4-207ENST00000402434 CHMP7Q8WUX9 453 aaPredicted RBP32.95■■■□□ 2.87
RTN4-207ENST00000402434 ERICH3Q5RHP9 1530 aa32.9■■■□□ 2.86
RTN4-207ENST00000402434 KIF27Q86VH2 1401 aa32.83■■■□□ 2.85
RTN4-207ENST00000402434 ADAMTS12P58397 1594 aa32.8■■■□□ 2.84
RTN4-207ENST00000402434 FHAD1B1AJZ9 1412 aa32.8■■■□□ 2.84
RTN4-207ENST00000402434 TRIM41Q8WV44 630 aa32.74■■■□□ 2.83
RTN4-207ENST00000402434 IGF1RP08069 1367 aa32.73■■■□□ 2.83
RTN4-207ENST00000402434 GRIN2AQ12879 1464 aa32.73■■■□□ 2.83
RTN4-207ENST00000402434 CLASP1Q7Z460 1538 aa32.7■■■□□ 2.82
RTN4-207ENST00000402434 ARHGEF11O15085 1522 aa32.62■■■□□ 2.81
RTN4-207ENST00000402434 NUP160Q12769 1436 aa32.62■■■□□ 2.81
RTN4-207ENST00000402434 RIMBP3CA6NJZ7 1639 aa32.6■■■□□ 2.81
RTN4-207ENST00000402434 RIMBP3BA6NNM3 1639 aa32.6■■■□□ 2.81
RTN4-207ENST00000402434 RIMBP3Q9UFD9 1639 aa32.6■■■□□ 2.81
RTN4-207ENST00000402434 CUL7Q14999 1698 aa32.57■■■□□ 2.8
RTN4-207ENST00000402434 CEP170Q5SW79 1584 aa32.56■■■□□ 2.8
RTN4-207ENST00000402434 RUSC2Q8N2Y8 1516 aa32.53■■■□□ 2.8
RTN4-207ENST00000402434 CARMIL1Q5VZK9 1371 aa32.52■■■□□ 2.8
RTN4-207ENST00000402434 CHIC1Q5VXU3 224 aa32.39■■■□□ 2.78
RTN4-207ENST00000402434 ARAP1Q96P48 1450 aa32.37■■■□□ 2.77
RTN4-207ENST00000402434 CYB5RLQ6IPT4 315 aa32.35■■■□□ 2.77
RTN4-207ENST00000402434 SHROOM2Q13796 1616 aa32.34■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms